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HowTo-ImportOpenMSIntoKNIME
Note: this is still a draft! Updates will follow
Import OpenMS nodes into KNIME
The last stable release of OpenMS can be installed via the KNIME update site. A detailed description how to do this can be found here. If you want to install the current HEAD of OpenMS you have to compile your own KNIME plugin. The following HowTo describes how this can be achieved.
Prepare your OpenMS build environment
https://open-ms.svn.sourceforge.net/svnroot/open-ms/THIRDPARTY/SEARCHENGINES/MacOS/64bit
cmake -D CMAKE_FIND_ROOT_PATH=${CONTRIB_PATH} -D ENABLE_PREPARE_KNIME_PACKAGE=On -D SEARCH_ENGINES_DIRECTORY=${SEARCH_ENGINES_DIR} /path/to/openms
Prepare the OpenMS the OpenMS nodes
make TOPP UTILS make prepare_knime_package
Prepare KNIME
KNIME SDK Help -> Install new software -> Work with: KNIME Update Site -> KNIME Labs -> KNIME File Handling Nodes
Create the KNIME nodes source code
git clone https://github.com/genericworkflownodes/GenericKnimeNodes.git ant -Dplugin.dir=${PLUGIN_SOURCE} -Dcustom.plugin.generator.target=${PLUGIN_BUILD} -Dknime.sdk=${PATH_TO_KNIME_SDK}
