ConversionScripts

Conversion Scripts

The following scripts allow users to convert result files from MaxQuant, Thermo's Proteome Discoverer and Nonlinear Dynamics' Progenesis to the OpenMS format consensusXML. Results from external tools can then be opened in the OpenMS Viewer TOPPView and be compared.

MaxQuant

• SILAC results MQ2cXML_SILAC.tar.gz (open-ms.svn.sourceforge.net)
• label free results MQ2cXML_labelfree.tar.gz (open-ms.svn.sourceforge.net)

Proteome Discoverer

• SILAC results PD2cXML_SILAC.tar.gz (open-ms.svn.sourceforge.net)
• label free results (work in progress)

Progenesis

• SILAC results PG2cXML_SILAC.tar.gz (open-ms.svn.sourceforge.net)
• label free results PG2cXML_labelfree.tar.gz (open-ms.svn.sourceforge.net)