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From: <sri...@us...> - 2008-03-24 20:50:17
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Revision: 164
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=164&view=rev
Author: srikrish
Date: 2008-03-24 13:49:09 -0700 (Mon, 24 Mar 2008)
Log Message:
-----------
Version 1.9.3
Added Paths:
-----------
tags/opal-py-1.9.3/
tags/opal-py-1.9.3/ApbsClient.py
tags/opal-py-1.9.3/CHANGELOG
tags/opal-py-1.9.3/Pdb2pqrClient.py
tags/opal-py-1.9.3/docs/index.html
tags/opal-py-1.9.3/etc/apbs.in
tags/opal-py-1.9.3/etc/ion.xml
tags/opal-py-1.9.3/make-dist.sh
Removed Paths:
-------------
tags/opal-py-1.9.3/Pdb2pqrClient.py
tags/opal-py-1.9.3/docs/index.html
tags/opal-py-1.9.3/make-dist.sh
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From: <sri...@us...> - 2008-03-24 20:48:42
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Revision: 163
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=163&view=rev
Author: srikrish
Date: 2008-03-24 13:47:27 -0700 (Mon, 24 Mar 2008)
Log Message:
-----------
Version 1.9.3
Modified Paths:
--------------
tags/opal-core-1.9.3/configs/pdb2pqr_config.xml
tags/opal-core-1.9.3/docbook/etc/rocks.dsl
Added Paths:
-----------
tags/opal-core-1.9.3/
tags/opal-core-1.9.3/playground/src/edu/sdsc/nbcr/opal/OpalJobManager.java
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From: <sri...@us...> - 2008-03-24 17:35:12
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Revision: 162
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=162&view=rev
Author: srikrish
Date: 2008-03-24 10:34:54 -0700 (Mon, 24 Mar 2008)
Log Message:
-----------
got rid of queryStatus - this can be gotten just once by the service impl
from the DB. no need for every plugin to implement this separately.
Modified Paths:
--------------
trunk/opal/opal-core/playground/src/edu/sdsc/nbcr/opal/OpalJobManager.java
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From: <sri...@us...> - 2008-03-24 05:37:09
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Revision: 161
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=161&view=rev
Author: srikrish
Date: 2008-03-23 22:29:05 -0700 (Sun, 23 Mar 2008)
Log Message:
-----------
my first pass at the job manager interface
Added Paths:
-----------
trunk/opal/opal-core/playground/src/edu/sdsc/nbcr/opal/OpalJobManager.java
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From: <lcl...@us...> - 2008-03-20 00:54:44
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Revision: 160
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=160&view=rev
Author: lclement
Date: 2008-03-19 17:54:49 -0700 (Wed, 19 Mar 2008)
Log Message:
-----------
some uncommited things I had on my pc, plus upgrade of the python doc
Modified Paths:
--------------
trunk/opal/opal-website/pom.xml
trunk/opal/opal-website/src/site/xdoc/documentation.xml
Added Paths:
-----------
trunk/opal/opal-website/copydocs.sh
trunk/opal/opal-website/src/site/resources/tutorials/
trunk/opal/opal-website/src/site/resources/tutorials/opal-tutorial.ppt
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From: <lcl...@us...> - 2008-03-19 01:31:19
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Revision: 159
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=159&view=rev
Author: lclement
Date: 2008-03-18 18:31:25 -0700 (Tue, 18 Mar 2008)
Log Message:
-----------
Deleted some methods and added GSSCredential as an argument to
some methods to pass user credential
Getoutput files methods are useless, the file are in the WD of the job
clem
Modified Paths:
--------------
trunk/opal/opal-core/playground/src/edu/sdsc/nbcr/opal/JobLaunchInterface.java
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From: <lcl...@us...> - 2008-03-18 01:14:28
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Revision: 158
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=158&view=rev
Author: lclement
Date: 2008-03-17 18:14:34 -0700 (Mon, 17 Mar 2008)
Log Message:
-----------
Moving files around...
clem
Removed Paths:
-------------
trunk/opal/opal-core/src/edu/sdsc/nbcr/opal/JobLaunchInterface.java
trunk/opal/opal-core/src/edu/sdsc/nbcr/opal/JobStatus.java
trunk/opal/opal-core/src/edu/sdsc/nbcr/opal/OpalApplication.java
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From: <lcl...@us...> - 2008-03-18 01:13:15
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Revision: 157
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=157&view=rev
Author: lclement
Date: 2008-03-17 18:13:18 -0700 (Mon, 17 Mar 2008)
Log Message:
-----------
Moving the first draft of the plugin architecture
clem
Added Paths:
-----------
trunk/opal/opal-core/playground/
trunk/opal/opal-core/playground/src/
trunk/opal/opal-core/playground/src/edu/
trunk/opal/opal-core/playground/src/edu/sdsc/
trunk/opal/opal-core/playground/src/edu/sdsc/nbcr/
trunk/opal/opal-core/playground/src/edu/sdsc/nbcr/opal/
trunk/opal/opal-core/playground/src/edu/sdsc/nbcr/opal/JobLaunchInterface.java
trunk/opal/opal-core/playground/src/edu/sdsc/nbcr/opal/JobStatus.java
trunk/opal/opal-core/playground/src/edu/sdsc/nbcr/opal/OpalApplication.java
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From: <lcl...@us...> - 2008-03-18 00:51:15
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Revision: 156
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=156&view=rev
Author: lclement
Date: 2008-03-17 17:51:21 -0700 (Mon, 17 Mar 2008)
Log Message:
-----------
First attempt of:
Submission interface for the new Plugin architecture.
clem
Added Paths:
-----------
trunk/opal/opal-core/src/edu/sdsc/nbcr/opal/JobLaunchInterface.java
trunk/opal/opal-core/src/edu/sdsc/nbcr/opal/JobStatus.java
trunk/opal/opal-core/src/edu/sdsc/nbcr/opal/OpalApplication.java
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From: <sri...@us...> - 2008-03-17 18:11:33
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Revision: 155
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=155&view=rev
Author: srikrish
Date: 2008-03-17 11:10:23 -0700 (Mon, 17 Mar 2008)
Log Message:
-----------
got rid of a reference to an older link to nbcr.net/services
Modified Paths:
--------------
trunk/opal/opal-py/docs/index.html
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From: <sri...@us...> - 2008-03-14 22:31:36
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Revision: 154
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=154&view=rev
Author: srikrish
Date: 2008-03-14 15:31:24 -0700 (Fri, 14 Mar 2008)
Log Message:
-----------
updated documentation for new ZSI 2.1_a1 setup
Modified Paths:
--------------
trunk/opal/opal-py/docs/index.html
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From: <sri...@us...> - 2008-03-14 22:03:33
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Revision: 153
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=153&view=rev
Author: srikrish
Date: 2008-03-14 15:03:17 -0700 (Fri, 14 Mar 2008)
Log Message:
-----------
updated to work with ZSI 2.1_a1 - this removes the dependency on PyXML
Modified Paths:
--------------
trunk/opal/opal-py/Pdb2pqrClient.py
trunk/opal/opal-py/make-dist.sh
Added Paths:
-----------
trunk/opal/opal-py/ApbsClient.py
trunk/opal/opal-py/CHANGELOG
trunk/opal/opal-py/etc/apbs.in
trunk/opal/opal-py/etc/ion.xml
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From: <lcl...@us...> - 2008-03-14 00:00:10
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Revision: 152
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=152&view=rev
Author: lclement
Date: 2008-03-13 17:00:12 -0700 (Thu, 13 Mar 2008)
Log Message:
-----------
New schema for the opal DB, now it uses text so that
we should not have anymore exception becuase the filename
are too long
clem
Modified Paths:
--------------
trunk/opal/opal-core/etc/opal_db.sql
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From: <sri...@us...> - 2008-02-27 19:31:53
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Revision: 151
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=151&view=rev
Author: srikrish
Date: 2008-02-27 11:31:49 -0800 (Wed, 27 Feb 2008)
Log Message:
-----------
added recent changes for 1.9.3
Modified Paths:
--------------
trunk/opal/opal-core/CHANGELOG
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From: <lcl...@us...> - 2008-02-27 03:29:11
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Revision: 150
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=150&view=rev
Author: lclement
Date: 2008-02-26 19:29:14 -0800 (Tue, 26 Feb 2008)
Log Message:
-----------
If there are not flag in the config filem, then it throws a null
pointer exceptions.
Patched!!
clem
Modified Paths:
--------------
trunk/opal/opal-core/src/edu/sdsc/nbcr/opal/gui/actions/CreateSubmissionFormAction.java
trunk/opal/opal-core/src/edu/sdsc/nbcr/opal/gui/common/AppMetadata.java
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From: <sri...@us...> - 2008-02-21 01:23:44
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Revision: 149
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=149&view=rev
Author: srikrish
Date: 2008-02-20 17:23:48 -0800 (Wed, 20 Feb 2008)
Log Message:
-----------
not allowing regular expressions for tags - just simple strings
Modified Paths:
--------------
trunk/opal/opal-core/wsdl/opal.wsdl
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From: <sri...@us...> - 2008-02-21 01:23:01
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Revision: 148
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=148&view=rev
Author: srikrish
Date: 2008-02-20 17:23:00 -0800 (Wed, 20 Feb 2008)
Log Message:
-----------
changed a couple of logger statements to DEBUG
Modified Paths:
--------------
trunk/opal/opal-core/src/edu/sdsc/nbcr/common/TypeDeserializer.java
trunk/opal/opal-core/src/edu/sdsc/nbcr/common/TypeSerializer.java
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From: <sri...@us...> - 2008-02-21 01:22:41
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Revision: 147
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=147&view=rev
Author: srikrish
Date: 2008-02-20 17:22:44 -0800 (Wed, 20 Feb 2008)
Log Message:
-----------
added code to check if there is more than one mutually exclusive parameter
in a group
Modified Paths:
--------------
trunk/opal/opal-core/src/edu/sdsc/nbcr/opal/ArgValidator.java
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From: <sri...@us...> - 2008-02-20 19:45:34
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Revision: 146
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=146&view=rev
Author: srikrish
Date: 2008-02-20 11:45:15 -0800 (Wed, 20 Feb 2008)
Log Message:
-----------
arg validation mods
Modified Paths:
--------------
trunk/opal/opal-core/CHANGELOG
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From: <sri...@us...> - 2008-02-20 19:38:30
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Revision: 145
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=145&view=rev
Author: srikrish
Date: 2008-02-20 11:38:34 -0800 (Wed, 20 Feb 2008)
Log Message:
-----------
now checking whether an untagged param is part of a mutually exclusive
group - if so, not validating it as it is impossible to figure out which
one of the parameters in the group it is
Modified Paths:
--------------
trunk/opal/opal-core/src/edu/sdsc/nbcr/opal/ArgValidator.java
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From: <lcl...@us...> - 2008-02-19 18:12:04
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Revision: 144
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=144&view=rev
Author: lclement
Date: 2008-02-19 10:12:03 -0800 (Tue, 19 Feb 2008)
Log Message:
-----------
Added the locale setting to every SimpleDateFormatter call.
Let's hope that this is the last time we spend time on this
locale thing....
clem
Modified Paths:
--------------
trunk/opal/opal-core/src/edu/sdsc/nbcr/opal/dashboard/persistence/DBManager.java
trunk/opal/opal-core/src/edu/sdsc/nbcr/opal/dashboard/servlet/PloterServlet.java
trunk/opal/opal-core/src/edu/sdsc/nbcr/opal/dashboard/util/DateHelper.java
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From: <lcl...@us...> - 2008-02-15 00:07:29
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Revision: 143
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=143&view=rev
Author: lclement
Date: 2008-02-14 16:07:24 -0800 (Thu, 14 Feb 2008)
Log Message:
-----------
- Fixed a bug in the submission form where input file parameters were not
properly handled on the command line
- Fixed also a bug in the complex Submission form, it wasn't importing the core
tag library
- Improved clean task of the build.xml file, now it delets also the generated
JavaDoc
Modified Paths:
--------------
trunk/opal/opal-core/CHANGELOG
trunk/opal/opal-core/build.xml
trunk/opal/opal-core/src/edu/sdsc/nbcr/opal/gui/actions/LaunchJobAction.java
trunk/opal/opal-core/webapps/opal/opalGUI-jsp/DisplayForm.jsp
trunk/opal/opal-core/webapps/opal/opalGUI-jsp/DisplaySimpleForm.jsp
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From: <sri...@us...> - 2008-02-12 21:42:42
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Revision: 142
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=142&view=rev
Author: srikrish
Date: 2008-02-12 13:42:43 -0800 (Tue, 12 Feb 2008)
Log Message:
-----------
modified the main() to use the location of xml configuration (rather than
a separate args file). also fixed a bug where the workingDir was not being
used to figure out complete path of files during validation. Still no
support for groups however.
Modified Paths:
--------------
trunk/opal/opal-core/src/edu/sdsc/nbcr/opal/ArgValidator.java
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From: <lcl...@us...> - 2008-02-12 19:29:45
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Revision: 141
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=141&view=rev
Author: lclement
Date: 2008-02-12 11:29:47 -0800 (Tue, 12 Feb 2008)
Log Message:
-----------
Commited file on svn
clem
Modified Paths:
--------------
trunk/opal/opal-core/configs/pdb2pqr_config.xml
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From: <lcl...@us...> - 2008-02-06 23:43:02
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Revision: 140
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=140&view=rev
Author: lclement
Date: 2008-02-06 15:42:09 -0800 (Wed, 06 Feb 2008)
Log Message:
-----------
Spelling error in the update button on the statistics charts page
clem
Modified Paths:
--------------
trunk/opal/opal-core/webapps/opal/dashboard-jsp/statistics.jsp
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