Menu
▾
▴
opaltoolkit-svnnotification — Notification from the SVN server
You can subscribe to this list here.
| 2007 |
Jan
|
Feb
|
Mar
|
Apr
|
May
|
Jun
|
Jul
|
Aug
|
Sep
|
Oct
|
Nov
|
Dec
(32) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2008 |
Jan
(81) |
Feb
(31) |
Mar
(18) |
Apr
(62) |
May
(21) |
Jun
(19) |
Jul
(4) |
Aug
|
Sep
(11) |
Oct
(20) |
Nov
|
Dec
(2) |
| 2009 |
Jan
(14) |
Feb
(7) |
Mar
(43) |
Apr
(12) |
May
(21) |
Jun
(13) |
Jul
(7) |
Aug
(16) |
Sep
(29) |
Oct
(32) |
Nov
(19) |
Dec
(1) |
| 2010 |
Jan
(22) |
Feb
(46) |
Mar
(23) |
Apr
(36) |
May
(20) |
Jun
(14) |
Jul
|
Aug
(5) |
Sep
(3) |
Oct
(10) |
Nov
(7) |
Dec
(22) |
| 2011 |
Jan
(3) |
Feb
(18) |
Mar
(1) |
Apr
(10) |
May
(6) |
Jun
(3) |
Jul
(8) |
Aug
|
Sep
|
Oct
|
Nov
|
Dec
|
| 2012 |
Jan
|
Feb
|
Mar
|
Apr
(16) |
May
(11) |
Jun
(8) |
Jul
(3) |
Aug
(1) |
Sep
|
Oct
|
Nov
|
Dec
(21) |
|
From: <j2...@us...> - 2008-06-18 22:27:14
|
Revision: 264
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=264&view=rev
Author: j2ren
Date: 2008-06-18 15:27:22 -0700 (Wed, 18 Jun 2008)
Log Message:
-----------
Removed the hardcoded number for --cut-dirs. Added a piece of code to get the correct number for --cut-dirs from any opal url.
Modified Paths:
--------------
trunk/opal/opal-core/configs/run_autodock.py
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <sri...@us...> - 2008-06-14 00:57:15
|
Revision: 263
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=263&view=rev
Author: srikrish
Date: 2008-06-13 17:56:10 -0700 (Fri, 13 Jun 2008)
Log Message:
-----------
added first test for arg validator - probably needs more
Modified Paths:
--------------
trunk/opal/opal2-core/TODO
trunk/opal/opal2-core/src/edu/sdsc/nbcr/opal/util/Tests.java
Added Paths:
-----------
trunk/opal/opal2-core/src/edu/sdsc/nbcr/opal/util/PackageTest.java
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <sri...@us...> - 2008-06-13 05:08:38
|
Revision: 262
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=262&view=rev
Author: srikrish
Date: 2008-06-12 22:08:45 -0700 (Thu, 12 Jun 2008)
Log Message:
-----------
now can add an extra element to the configuration to over-ride the job
manager type set in opal.properties. the job manager type in the app config
gets higher precedence.
Modified Paths:
--------------
trunk/opal/opal2-core/TODO
trunk/opal/opal2-core/configs/pdb2pqr_config.xml
trunk/opal/opal2-core/src/edu/sdsc/nbcr/opal/AppServiceImpl.java
trunk/opal/opal2-core/wsdl/opal.wsdl
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <lcl...@us...> - 2008-06-13 01:26:16
|
Revision: 261
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=261&view=rev
Author: lclement
Date: 2008-06-12 18:26:10 -0700 (Thu, 12 Jun 2008)
Log Message:
-----------
Deleted the off by one day todo item
Modified Paths:
--------------
trunk/opal/opal2-core/TODO
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <lcl...@us...> - 2008-06-13 01:25:25
|
Revision: 260
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=260&view=rev
Author: lclement
Date: 2008-06-12 18:25:28 -0700 (Thu, 12 Jun 2008)
Log Message:
-----------
- fix the bug for one day offset in the dashboard
basically the ednDate was year-month-day-00:00:00 now
I made it: year-month-day-23:59:59 so it include the last
day as well
Modified Paths:
--------------
trunk/opal/opal2-core/src/edu/sdsc/nbcr/opal/dashboard/persistence/DBManager.java
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <lcl...@us...> - 2008-06-06 23:07:12
|
Revision: 259
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=259&view=rev
Author: lclement
Date: 2008-06-06 16:07:12 -0700 (Fri, 06 Jun 2008)
Log Message:
-----------
Still refactoring some code here and there...
And facing back some spamming from sriram commit...
clem
Modified Paths:
--------------
trunk/opal/opal2-core/src/edu/sdsc/nbcr/opal/gui/common/GetServiceListHelper.java
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <sri...@us...> - 2008-06-06 22:41:58
|
Revision: 258
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=258&view=rev
Author: srikrish
Date: 2008-06-06 15:41:58 -0700 (Fri, 06 Jun 2008)
Log Message:
-----------
added a target for running junit tests
Modified Paths:
--------------
trunk/opal/opal2-core/build.xml
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <sri...@us...> - 2008-06-06 22:37:49
|
Revision: 257
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=257&view=rev
Author: srikrish
Date: 2008-06-06 15:37:56 -0700 (Fri, 06 Jun 2008)
Log Message:
-----------
added some TODO junit tests
Modified Paths:
--------------
trunk/opal/opal2-core/TODO
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <sri...@us...> - 2008-06-06 22:36:21
|
Revision: 256
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=256&view=rev
Author: srikrish
Date: 2008-06-06 15:36:26 -0700 (Fri, 06 Jun 2008)
Log Message:
-----------
added junit jar
Added Paths:
-----------
trunk/opal/opal2-core/lib/junit-4.4.jar
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <sri...@us...> - 2008-06-06 22:36:02
|
Revision: 255
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=255&view=rev
Author: srikrish
Date: 2008-06-06 15:36:08 -0700 (Fri, 06 Jun 2008)
Log Message:
-----------
added some junit tests for the state management
Modified Paths:
--------------
trunk/opal/opal2-core/src/edu/sdsc/nbcr/opal/state/HibernateUtil.java
Added Paths:
-----------
trunk/opal/opal2-core/src/edu/sdsc/nbcr/opal/state/PackageTest.java
trunk/opal/opal2-core/src/edu/sdsc/nbcr/opal/util/Tests.java
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <lcl...@us...> - 2008-06-06 01:00:14
|
Revision: 254
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=254&view=rev
Author: lclement
Date: 2008-06-05 18:00:20 -0700 (Thu, 05 Jun 2008)
Log Message:
-----------
Refactoring. Moved the parser code out of CreateSubmissionFormAction.java
into AppMetadataParser.java.
I should have done this some time ago...
clem
Modified Paths:
--------------
trunk/opal/opal2-core/src/edu/sdsc/nbcr/opal/gui/actions/CreateSubmissionFormAction.java
Added Paths:
-----------
trunk/opal/opal2-core/src/edu/sdsc/nbcr/opal/gui/common/AppMetadataParser.java
Removed Paths:
-------------
trunk/opal/opal2-core/src/edu/sdsc/nbcr/opal/gui/common/AppMetadataContainer.java
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <lcl...@us...> - 2008-06-04 23:05:25
|
Revision: 253
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=253&view=rev
Author: lclement
Date: 2008-06-04 16:05:32 -0700 (Wed, 04 Jun 2008)
Log Message:
-----------
Proper handling of the OpalFault message with the getMessage1.
Removed all the "Impossible" from the warning messages, the
application completely lost all that classy italian touch...
clem
Modified Paths:
--------------
trunk/opal/opal2-core/src/edu/sdsc/nbcr/opal/gui/actions/CreateSubmissionFormAction.java
trunk/opal/opal2-core/src/edu/sdsc/nbcr/opal/gui/actions/GetJobStatusAction.java
trunk/opal/opal2-core/src/edu/sdsc/nbcr/opal/gui/actions/GetServicesListAction.java
trunk/opal/opal2-core/src/edu/sdsc/nbcr/opal/gui/actions/LaunchJobAction.java
trunk/opal/opal2-core/src/edu/sdsc/nbcr/opal/gui/common/GetServiceListHelper.java
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <sri...@us...> - 2008-05-29 22:25:22
|
Revision: 252
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=252&view=rev
Author: srikrish
Date: 2008-05-29 15:25:29 -0700 (Thu, 29 May 2008)
Log Message:
-----------
added some names for people responsible for the TODO list
Modified Paths:
--------------
trunk/opal/opal2-core/TODO
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <sri...@us...> - 2008-05-29 22:08:08
|
Revision: 251
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=251&view=rev
Author: srikrish
Date: 2008-05-29 15:08:16 -0700 (Thu, 29 May 2008)
Log Message:
-----------
added a parameter to the opal config to validate command-line args before
job submission. changed some sources and xmls accordingly.
Modified Paths:
--------------
trunk/opal/opal2-core/TODO
trunk/opal/opal2-core/build.xml
trunk/opal/opal2-core/configs/pdb2pqr_config.xml
trunk/opal/opal2-core/src/edu/sdsc/nbcr/opal/AppServiceImpl.java
trunk/opal/opal2-core/src/edu/sdsc/nbcr/opal/util/ArgValidator.java
trunk/opal/opal2-core/wsdl/opal.wsdl
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <sri...@us...> - 2008-05-28 23:38:50
|
Revision: 250
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=250&view=rev
Author: srikrish
Date: 2008-05-28 16:38:58 -0700 (Wed, 28 May 2008)
Log Message:
-----------
modified it to reflect things that have been done already
Modified Paths:
--------------
trunk/opal/opal2-core/TODO
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <sri...@us...> - 2008-05-27 00:31:34
|
Revision: 249
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=249&view=rev
Author: srikrish
Date: 2008-05-26 17:31:42 -0700 (Mon, 26 May 2008)
Log Message:
-----------
fixed a typo - was earlier referring to this service as pdb2pqr
Modified Paths:
--------------
trunk/opal/opal-py/ApbsClient.py
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <sri...@us...> - 2008-05-22 21:37:53
|
Revision: 248
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=248&view=rev
Author: srikrish
Date: 2008-05-22 14:37:59 -0700 (Thu, 22 May 2008)
Log Message:
-----------
better exception handling now for hibernate operations
Modified Paths:
--------------
trunk/opal/opal2-core/src/edu/sdsc/nbcr/opal/AppServiceImpl.java
trunk/opal/opal2-core/src/edu/sdsc/nbcr/opal/state/HibernateUtil.java
Added Paths:
-----------
trunk/opal/opal2-core/src/edu/sdsc/nbcr/opal/state/StateManagerException.java
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <sri...@us...> - 2008-05-22 00:18:32
|
Revision: 247
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=247&view=rev
Author: srikrish
Date: 2008-05-21 17:18:38 -0700 (Wed, 21 May 2008)
Log Message:
-----------
added some code to get rid of zombie entries from the state database
Modified Paths:
--------------
trunk/opal/opal2-core/src/edu/sdsc/nbcr/opal/AppServiceImpl.java
trunk/opal/opal2-core/src/edu/sdsc/nbcr/opal/state/HibernateUtil.java
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <sri...@us...> - 2008-05-21 05:40:25
|
Revision: 246
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=246&view=rev
Author: srikrish
Date: 2008-05-20 22:40:32 -0700 (Tue, 20 May 2008)
Log Message:
-----------
added some code to provide pending/active information via job status
Modified Paths:
--------------
trunk/opal/opal2-core/src/edu/sdsc/nbcr/opal/manager/DRMAAJobManager.java
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <lcl...@us...> - 2008-05-21 02:02:54
|
Revision: 245
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=245&view=rev
Author: lclement
Date: 2008-05-20 19:02:57 -0700 (Tue, 20 May 2008)
Log Message:
-----------
Finally the dashboard is on again!
There is one query which is not very correct regarding average execution time.
Need some more testing with larger data set..
clem
Modified Paths:
--------------
trunk/opal/opal2-core/src/edu/sdsc/nbcr/opal/dashboard/persistence/DBManager.java
trunk/opal/opal2-core/src/edu/sdsc/nbcr/opal/dashboard/servlet/OpalInfoServlet.java
trunk/opal/opal2-core/src/edu/sdsc/nbcr/opal/dashboard/servlet/PloterServlet.java
trunk/opal/opal2-core/src/edu/sdsc/nbcr/opal/dashboard/util/DateHelper.java
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <sri...@us...> - 2008-05-21 00:35:43
|
Revision: 244
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=244&view=rev
Author: srikrish
Date: 2008-05-20 17:35:50 -0700 (Tue, 20 May 2008)
Log Message:
-----------
added some code to get job status at a finer granularity
Modified Paths:
--------------
trunk/opal/opal2-core/src/edu/sdsc/nbcr/opal/manager/GlobusJobManager.java
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <sri...@us...> - 2008-05-20 21:12:51
|
Revision: 243
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=243&view=rev
Author: srikrish
Date: 2008-05-20 14:12:58 -0700 (Tue, 20 May 2008)
Log Message:
-----------
Globus job manager works now for both serial and parallel runs - but
several improvements still possible (future commits)
Modified Paths:
--------------
trunk/opal/opal2-core/src/edu/sdsc/nbcr/opal/manager/GlobusJobManager.java
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <sri...@us...> - 2008-05-20 18:43:37
|
Revision: 242
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=242&view=rev
Author: srikrish
Date: 2008-05-20 11:43:43 -0700 (Tue, 20 May 2008)
Log Message:
-----------
added a Globus jobmanager - minor cleanup of the other job managers as well
Modified Paths:
--------------
trunk/opal/opal2-core/src/edu/sdsc/nbcr/opal/AppServiceImpl.java
trunk/opal/opal2-core/src/edu/sdsc/nbcr/opal/manager/DRMAAJobManager.java
trunk/opal/opal2-core/src/edu/sdsc/nbcr/opal/manager/ForkJobManager.java
Added Paths:
-----------
trunk/opal/opal2-core/src/edu/sdsc/nbcr/opal/manager/GlobusJobManager.java
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <lcl...@us...> - 2008-05-15 02:20:00
|
Revision: 241
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=241&view=rev
Author: lclement
Date: 2008-05-14 19:20:01 -0700 (Wed, 14 May 2008)
Log Message:
-----------
one more thing I'd like in the next release
Modified Paths:
--------------
trunk/opal/opal2-core/TODO
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
|
From: <lcl...@us...> - 2008-05-15 02:18:36
|
Revision: 240
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=240&view=rev
Author: lclement
Date: 2008-05-14 19:18:42 -0700 (Wed, 14 May 2008)
Log Message:
-----------
- ported some patch from 1.9.3 to the new opal 2
- now the LunchJob portlet catch Exception thrown by launchJob instead
of throwing them
Still missing the number of CPUs
clem
Modified Paths:
--------------
trunk/opal/opal2-core/src/edu/sdsc/nbcr/opal/gui/actions/GetJobStatusAction.java
trunk/opal/opal2-core/src/edu/sdsc/nbcr/opal/gui/actions/LaunchJobAction.java
trunk/opal/opal2-core/src/edu/sdsc/nbcr/opal/gui/common/AppMetadata.java
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
|
