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From: <sri...@us...> - 2009-11-11 17:49:06
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Revision: 510
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=510&view=rev
Author: srikrish
Date: 2009-11-11 17:48:59 +0000 (Wed, 11 Nov 2009)
Log Message:
-----------
Jason's dpf zip files
Modified Paths:
--------------
trunk/opal/playground/autodock-ws-client/samples/dpfFiles.zip
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From: <sri...@us...> - 2009-11-06 23:36:05
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Revision: 509
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=509&view=rev
Author: srikrish
Date: 2009-11-06 23:35:52 +0000 (Fri, 06 Nov 2009)
Log Message:
-----------
added a zipped version of dpf files for bulk service - only has 1 dpf file for now for testing
Added Paths:
-----------
trunk/opal/playground/autodock-ws-client/samples/dpfFiles.zip
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From: <sri...@us...> - 2009-11-06 23:24:14
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Revision: 508
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=508&view=rev
Author: srikrish
Date: 2009-11-06 23:23:52 +0000 (Fri, 06 Nov 2009)
Log Message:
-----------
updated parameter names as per Jason's changes
Modified Paths:
--------------
trunk/opal/playground/autodock-ws-client/src/main/java/org/renci/ws/AutodockAdvancedAsynchClient.java
trunk/opal/playground/autodock-ws-client/src/main/java/org/renci/ws/AutodockBasicAsyncClient.java
trunk/opal/playground/autodock-ws-client/src/main/java/org/renci/ws/AutodockBasicSyncClient.java
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From: <sri...@us...> - 2009-11-06 22:48:40
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Revision: 507
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=507&view=rev
Author: srikrish
Date: 2009-11-06 22:48:30 +0000 (Fri, 06 Nov 2009)
Log Message:
-----------
added a new advanced service - doesn't work yet
Modified Paths:
--------------
trunk/opal/playground/autodock-ws-client/src/main/java/org/renci/ws/AutodockBasicAsyncClient.java
Added Paths:
-----------
trunk/opal/playground/autodock-ws-client/runAdvancedAsync.sh
trunk/opal/playground/autodock-ws-client/src/main/java/org/renci/ws/AutodockAdvancedAsynchClient.java
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From: <sri...@us...> - 2009-11-06 22:29:52
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Revision: 506
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=506&view=rev
Author: srikrish
Date: 2009-11-06 22:29:40 +0000 (Fri, 06 Nov 2009)
Log Message:
-----------
added a new async client for the basic service
Modified Paths:
--------------
trunk/opal/playground/autodock-ws-client/src/main/java/org/renci/ws/AutodockBasicSyncClient.java
Added Paths:
-----------
trunk/opal/playground/autodock-ws-client/runBasicAsync.sh
trunk/opal/playground/autodock-ws-client/runBasicSync.sh
trunk/opal/playground/autodock-ws-client/src/main/java/org/renci/ws/AutodockBasicAsyncClient.java
Removed Paths:
-------------
trunk/opal/playground/autodock-ws-client/run.sh
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From: <sri...@us...> - 2009-11-06 19:45:45
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Revision: 505
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=505&view=rev
Author: srikrish
Date: 2009-11-06 19:45:29 +0000 (Fri, 06 Nov 2009)
Log Message:
-----------
renamed AutodockClient and updated class name inside code
Modified Paths:
--------------
trunk/opal/playground/autodock-ws-client/run.sh
Added Paths:
-----------
trunk/opal/playground/autodock-ws-client/src/main/java/org/renci/ws/AutodockBasicSyncClient.java
Removed Paths:
-------------
trunk/opal/playground/autodock-ws-client/src/main/java/org/renci/ws/AutodockClient.java
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From: <sri...@us...> - 2009-11-06 19:42:55
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Revision: 504
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=504&view=rev
Author: srikrish
Date: 2009-11-06 19:42:45 +0000 (Fri, 06 Nov 2009)
Log Message:
-----------
added some comments in code
Modified Paths:
--------------
trunk/opal/playground/autodock-ws-client/src/main/java/org/renci/ws/AutodockClient.java
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From: <sri...@us...> - 2009-11-04 22:42:59
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Revision: 503
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=503&view=rev
Author: srikrish
Date: 2009-11-04 22:42:41 +0000 (Wed, 04 Nov 2009)
Log Message:
-----------
added code to write outputs to file
Modified Paths:
--------------
trunk/opal/playground/autodock-ws-client/src/main/java/org/renci/ws/AutodockClient.java
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From: <sri...@us...> - 2009-11-04 18:55:05
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Revision: 502
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=502&view=rev
Author: srikrish
Date: 2009-11-04 18:54:57 +0000 (Wed, 04 Nov 2009)
Log Message:
-----------
updated samples to include dpf file
Modified Paths:
--------------
trunk/opal/playground/autodock-ws-client/samples/2HTY_A.zip
Added Paths:
-----------
trunk/opal/playground/autodock-ws-client/samples/DANA.dpf
Removed Paths:
-------------
trunk/opal/playground/autodock-ws-client/samples/DANA.pdbqt
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From: <sri...@us...> - 2009-11-04 00:44:32
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Revision: 501
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=501&view=rev
Author: srikrish
Date: 2009-11-04 00:44:19 +0000 (Wed, 04 Nov 2009)
Log Message:
-----------
sample run script
Added Paths:
-----------
trunk/opal/playground/autodock-ws-client/run.sh
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From: <sri...@us...> - 2009-11-04 00:42:09
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Revision: 500
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=500&view=rev
Author: srikrish
Date: 2009-11-04 00:41:47 +0000 (Wed, 04 Nov 2009)
Log Message:
-----------
checking in a modified version of Jason Reilly's autodock client
Added Paths:
-----------
trunk/opal/playground/autodock-ws-client/
trunk/opal/playground/autodock-ws-client/build.properties
trunk/opal/playground/autodock-ws-client/build.xml
trunk/opal/playground/autodock-ws-client/etc/
trunk/opal/playground/autodock-ws-client/etc/classpath.bat
trunk/opal/playground/autodock-ws-client/etc/classpath.csh
trunk/opal/playground/autodock-ws-client/etc/classpath.sh
trunk/opal/playground/autodock-ws-client/samples/
trunk/opal/playground/autodock-ws-client/samples/2HTY_A.zip
trunk/opal/playground/autodock-ws-client/samples/DANA.pdbqt
trunk/opal/playground/autodock-ws-client/src/
trunk/opal/playground/autodock-ws-client/src/main/
trunk/opal/playground/autodock-ws-client/src/main/java/
trunk/opal/playground/autodock-ws-client/src/main/java/org/
trunk/opal/playground/autodock-ws-client/src/main/java/org/renci/
trunk/opal/playground/autodock-ws-client/src/main/java/org/renci/ws/
trunk/opal/playground/autodock-ws-client/src/main/java/org/renci/ws/AutodockClient.java
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From: <sri...@us...> - 2009-11-03 00:22:35
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Revision: 499
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=499&view=rev
Author: srikrish
Date: 2009-11-03 00:22:21 +0000 (Tue, 03 Nov 2009)
Log Message:
-----------
added db2 specific code for average execution time
Modified Paths:
--------------
trunk/opal/opal2-core/src/edu/sdsc/nbcr/opal/dashboard/persistence/DBManager.java
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From: <sri...@us...> - 2009-10-30 20:17:38
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Revision: 498
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=498&view=rev
Author: srikrish
Date: 2009-10-30 20:17:22 +0000 (Fri, 30 Oct 2009)
Log Message:
-----------
db2 jdbc jar
Added Paths:
-----------
trunk/opal/opal2-core/lib/db2jcc.jar
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From: <sri...@us...> - 2009-10-30 20:15:43
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Revision: 497
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=497&view=rev
Author: srikrish
Date: 2009-10-30 20:15:37 +0000 (Fri, 30 Oct 2009)
Log Message:
-----------
added support for db2
Modified Paths:
--------------
trunk/opal/opal2-core/TODO
trunk/opal/opal2-core/build.xml
trunk/opal/opal2-core/etc/hibernate-opal.cfg.xml
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From: <abr...@us...> - 2009-10-29 13:28:26
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Revision: 496
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=496&view=rev
Author: abretaud
Date: 2009-10-29 13:00:26 +0000 (Thu, 29 Oct 2009)
Log Message:
-----------
hopefully fix bug with tomcat 5.0
Modified Paths:
--------------
branches/opal2-core-anthony/soapfilter/xslt/typedSOAP2OpalSOAP.xsl
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From: <abr...@us...> - 2009-10-28 09:41:19
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Revision: 495
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=495&view=rev
Author: abretaud
Date: 2009-10-28 09:41:07 +0000 (Wed, 28 Oct 2009)
Log Message:
-----------
install drmaa.jar only if needed
Modified Paths:
--------------
branches/opal2-core-anthony/build.xml
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From: <sri...@us...> - 2009-10-28 00:31:38
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Revision: 494
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=494&view=rev
Author: srikrish
Date: 2009-10-28 00:31:29 +0000 (Wed, 28 Oct 2009)
Log Message:
-----------
updated DRMAA jar and job manager to version 6.1, updated version number to working version 2.2a.
Modified Paths:
--------------
trunk/opal/opal2-core/build.properties.template
trunk/opal/opal2-core/configs/pdb2pqr_config.xml
trunk/opal/opal2-core/lib/VERSIONS
trunk/opal/opal2-core/lib/drmaa.jar
trunk/opal/opal2-core/lib/log4j.properties
trunk/opal/opal2-core/src/edu/sdsc/nbcr/opal/manager/DRMAAJobManager.java
trunk/opal/opal2-core/webapps/opal2/WEB-INF/web.xml
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From: <abr...@us...> - 2009-10-27 14:31:13
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Revision: 493
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=493&view=rev
Author: abretaud
Date: 2009-10-27 14:30:58 +0000 (Tue, 27 Oct 2009)
Log Message:
-----------
update to drmaa 6.1
Modified Paths:
--------------
branches/opal2-core-anthony/lib/drmaa.jar
branches/opal2-core-anthony/src/edu/sdsc/nbcr/opal/manager/DRMAAJobManager.java
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From: <abr...@us...> - 2009-10-27 12:58:02
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Revision: 492
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=492&view=rev
Author: abretaud
Date: 2009-10-27 12:57:53 +0000 (Tue, 27 Oct 2009)
Log Message:
-----------
fix build errors
Modified Paths:
--------------
branches/opal2-core-anthony/build.xml
branches/opal2-core-anthony/soapfilter/src/org/inria/genouest/opal/tools/soaprequest/filter/OpalSOAPRequestWrapper.java
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From: <sri...@us...> - 2009-10-26 22:16:33
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Revision: 491
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=491&view=rev
Author: srikrish
Date: 2009-10-26 22:16:22 +0000 (Mon, 26 Oct 2009)
Log Message:
-----------
modified the axis-ant jar. this had a log4j properties file that kept overriding the opal log4j.properties
Modified Paths:
--------------
trunk/opal/opal2-core/webapps/opal2/WEB-INF/lib/axis-ant.jar
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From: <sri...@us...> - 2009-10-26 21:18:53
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Revision: 490
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=490&view=rev
Author: srikrish
Date: 2009-10-26 21:18:41 +0000 (Mon, 26 Oct 2009)
Log Message:
-----------
fixed a bug while checking for empty arguments
Modified Paths:
--------------
trunk/opal/opal2-core/src/edu/sdsc/nbcr/opal/util/ArgValidator.java
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From: <sri...@us...> - 2009-10-26 20:31:36
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Revision: 489
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=489&view=rev
Author: srikrish
Date: 2009-10-26 20:31:23 +0000 (Mon, 26 Oct 2009)
Log Message:
-----------
fixed a NPE in some versions of Java (Linux, Sun OS) in the ArgValidator - added more checks for null, and how objects are being initialized
Modified Paths:
--------------
trunk/opal/opal2-core/src/edu/sdsc/nbcr/opal/util/ArgValidator.java
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From: <sri...@us...> - 2009-10-08 19:51:04
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Revision: 488
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=488&view=rev
Author: srikrish
Date: 2009-10-08 19:50:51 +0000 (Thu, 08 Oct 2009)
Log Message:
-----------
updated contributors
Modified Paths:
--------------
trunk/opal/opal-website/src/site/xdoc/contributors.xml
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From: <sri...@us...> - 2009-10-08 18:07:53
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Revision: 487
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=487&view=rev
Author: srikrish
Date: 2009-10-08 18:07:40 +0000 (Thu, 08 Oct 2009)
Log Message:
-----------
committing version 2.1
Added Paths:
-----------
tags/opal2-core-2.1/
tags/opal2-core-2.1/CHANGELOG
tags/opal2-core-2.1/LICENSE
tags/opal2-core-2.1/README
tags/opal2-core-2.1/TODO
tags/opal2-core-2.1/build-admin.xml
tags/opal2-core-2.1/build.properties.template
tags/opal2-core-2.1/build.xml
tags/opal2-core-2.1/configs/
tags/opal2-core-2.1/docbook/
tags/opal2-core-2.1/etc/
tags/opal2-core-2.1/lib/
tags/opal2-core-2.1/samples/
tags/opal2-core-2.1/src/
tags/opal2-core-2.1/webapps/
tags/opal2-core-2.1/wsdd/
tags/opal2-core-2.1/wsdl/
Removed Paths:
-------------
tags/opal2-core-2.1/CHANGELOG
tags/opal2-core-2.1/LICENSE
tags/opal2-core-2.1/README
tags/opal2-core-2.1/TODO
tags/opal2-core-2.1/build-admin.xml
tags/opal2-core-2.1/build.properties.template
tags/opal2-core-2.1/build.xml
tags/opal2-core-2.1/configs/
tags/opal2-core-2.1/docbook/
tags/opal2-core-2.1/etc/
tags/opal2-core-2.1/lib/
tags/opal2-core-2.1/samples/
tags/opal2-core-2.1/src/
tags/opal2-core-2.1/webapps/
tags/opal2-core-2.1/wsdd/
tags/opal2-core-2.1/wsdl/
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From: <sri...@us...> - 2009-10-08 14:47:47
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Revision: 486
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=486&view=rev
Author: srikrish
Date: 2009-10-08 14:47:39 +0000 (Thu, 08 Oct 2009)
Log Message:
-----------
updated anthony's affiliation
Modified Paths:
--------------
trunk/opal/opal-website/pom.xml
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