[Opaltoolkit-users] Invalid Argument Error: OpenBabel WSDL URL

[Derek L. <der...@si...>]

Dear Opaltoolkit-users,

I am unable to complete an OpenBabel process using the WSDL URL on the NBCR Opal2 Dashboard, and I would be very grateful of any assistance.

I can complete other Opal functions like PDB2PQR and Vina from the GenericServiceClient.py on the NBCR Opal Server. Additionally, the OpenBabel service works perfectly when using the ‘Submission Form’ on the Opal Dashboard.

In using the GenericServiceClient.py, the OpenBabel service fails with the error: ‘Invalid -ipdb argument in -ipdb sample.pdb -opdbqt sample.pdqt’.

Service URL:  http://nbcr-222.ucsd.edu/opal2/services/openbabel_2.3.1
Input argument: -ipdb sample.pdb -opdbqt sample.pdbqt

Stderr: …nothing written to this file
Stdout: Invalid -ipdb argument in -ipdb sample.pdb -opdbqt sample.pdqt
The input file is loading correctly on the server.