Re: [Opaltoolkit-users] Opal job scheduler benefits

[Guillermo M. P. <gui...@si...>]

Sorry I forgot to paste the erro i'm getting in Opal Dashboard:

  * A remote error occured while submitting the job to the remote server
  * The remote error message is: Error while running executable via
    Condor - null



On 02/28/2013 09:47 AM, Guillermo Marco Puche wrote:
> Hello Luca,
>
> I currently can't run Opal jobs with Condor job scheduler:
>
> Here's my basic app: bwa.xml --> http://pastebin.com/uGqvvBki
> I know it has empty parameters but it's for testing purposes at this 
> moment. All parameters and flags are run in a shell script invoked by 
> condor job file.
>
> I want opal to execute my bwa.condor file (condor job file) which 
> currently works with condor_submit command but not with Opal.
>
> Here's the content of bwa.condor: http://pastebin.com/P9GNwriJ
> And here the bwa.sh invoked by bwa.condor to be executed on remote 
> cluster: http://pastebin.com/dWzQa92E
>
> Best regards,
> Guillermo.
>
>
> On 02/27/2013 11:17 PM, Luca Clementi wrote:
>> On Wed, Feb 27, 2013 at 4:46 AM, Guillermo Marco Puche
>> <gui...@si...>  wrote:
>>> Hello,
>>>
>>> I would like to know what are the benefits/extras of using Condor
>>> job.scheduler with Opal.
>> The jobs you submit to Opal will be executed using Condor.
>> Opal simply gives you a web service interface and then it has
>> different back-end to actually execute your jobs (condor, sge, pbs,
>> etc.).
>>
>>> What's the difference between job scheduler and submitting jobs to Condor
>>> straight with condor_submit?
>> you mean the difference between using Opal vs using condor_submit?
>> If you use Opal you can invoke the lanuchJob operation using
>> web-service standard (we provide python and java client side
>> libraries).
>> If you use condor you have to ssh to a machine (aka have an account)
>> and then you need to create a submission script and execute
>> condor_submit.
>>
>>
>> In NBCR We use Opal to submit job from web portal (where you have 1
>> user the web portal which is in charge of running different simulation
>> and opal takes care of creating working directories staging input and
>> outputs etc.).
>>
>>
>> Luca
>
>
>
>
>
> ------------------------------------------------------------------------------
> Everyone hates slow websites. So do we.
> Make your web apps faster with AppDynamics
> Download AppDynamics Lite for free today:
> http://p.sf.net/sfu/appdyn_d2d_feb
>
>
> _______________________________________________
> Opaltoolkit-users mailing list
> Opa...@li...
> https://lists.sourceforge.net/lists/listinfo/opaltoolkit-users


-- 
<http://i.imgur.com/1MjpCpe.png> *g.marco*: Informatician at Sistemas 
Genómicos S.L <#>
phone: 0034635197460 <callto:0034635197460>
web: www.sistemasgenomicos.com <http://www.sistemasgenomicos.com>