Re: [Opaltoolkit-users] problem launching opal jobs

[Malcolm T. <mt...@wu...>]

Wilfred,

On Thursday 25 June 2009 10:30:45 am Wilfred Li wrote:
> I got the same error when I tried your service using the Opal Client,
> whereas the ws.nbcr.net pdb2pqr service returned a successful launch. My
> guess is still an configuration issue. Could you please send me your
> opal.properties file and your app config file for pdb2pqr?

Sure.  They're attached.

> [wilfred@rocks-32 opal-ws-2.0]$ java
> edu.sdsc.nbcr.opal.GenericServiceClient -l
> http://ws.nbcr.net/opal2/services/pdb2pqr_1.4.0 -r launchJob -a "--ff=amber
> sample.pdb output.pqr" -f samples/sample.pdb

FWIW, I verified I could also use your server, which I guess rules out 
problems with my client.

I should mention that I do expect jobs to fail at some point with our server.
The user running Tomcat doesn't have permission to run jobs on the default 
queue.  I'm still trying to figure out how to have a different default queue 
for this specific user.  Luca mentioned that you use .sge_request for SGE but 
I can't find any equivalent configuration file for PBS.  I'm guessing the 
server would tell the client that it has accepted the job, and then it would 
fail to run.  I'm not sure if that is responsible for the current error.  

Malcolm

-- 
Malcolm Tobias
314.362.1594