Anna W posted a comment on discussion General Discussion

Hello everyone, Have anyone tried to run OncoIMPACT for tumor log2 values? Unfortunately, I don't have control tissues since my data comes from pediatric brain tumors

Cahais Vincent posted a comment on discussion General Discussion

Hello, I downloaded OncoIMPACT 9.3 and I try to run it on the test data. But I cannot make it work properly. It start complaining while reading the database and finally generate empty ouputs. (I attach the logs) Thank in advance for help. My config file is : outDir=~/OncoIMPACT/TEST_DATASET/TEST_GBM/ONCO_OUT/ scriptDir=~/OncoIMPACT/ numThreads=4 cnv=~/OncoIMPACT/TEST_DATASET/SAMPLE_DATA/GBM/CNV.txt exp=~/OncoIMPACT/TEST_DATASET/SAMPLE_DATA/GBM/EXPR.txt snp=~/OncoIMPACT/TEST_DATASET/SAMPLE_DATA/GBM/SNP.txt...

OncoIMPACT released /Pre-computed_databases/Breast_cancer.tgz

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OncoIMPACT released /README.md

OncoIMPACT released /oncoIMPACT_v0.9.4.tgz

OncoIMPACT released /TEST_DATASET.tgz

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OncoIMPACT released /Pre-computed_databases/Lung_adenocarcinoma.tgz

OncoIMPACT released /Pre-computed_databases/Liver_hepatocellular_carcinoma.tgz

OncoIMPACT released /Pre-computed_databases/Glioblastoma.tgz

OncoIMPACT released /Pre-computed_databases/Bladder_urothelial_carcinoma.tgz

OncoIMPACT released /Pre-computed_databases/Ovarian.tgz

OncoIMPACT released /Pre-computed_databases/Prostate_adenocarcinoma.tgz

OncoIMPACT released /Pre-computed_databases/Melanoma.tgz

OncoIMPACT released /Paper_datasets/Melanoma.tgz

OncoIMPACT released /Paper_datasets/Bladder_urothelial_carcinoma.tgz

OncoIMPACT released /Paper_datasets/Prostate_adenocarcinoma.tgz

OncoIMPACT released /Paper_datasets/Glioblastoma.tgz

OncoIMPACT released /Paper_datasets/Ovarian.tgz

OncoIMPACT released /oncoIMPACT_v0.9.3.tgz

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oncoIMPACT released /oncoIMPACT_v0.9.2.tgz

oncoIMPACT released /LICENSE

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oncoIMPACT released /CHANGELOG

oncoIMPACT released /oncoIMPACT_v0.9.1.tgz

oncoIMPACT released /oncoIMPACT_v0.9.tgz

oncoIMPACT released /README

oncoIMPACT released /Glioblastoma.tgz

oncoIMPACT released /oncoIMPACT.tgz

oncoIMPACT released /Ovarian.tgz

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