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From: Orion P. <or...@co...> - 2005-09-21 21:19:32
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Running octave 2.1.71 with octave-forge-2005-06.13 on Fedora Core 4. With the attached files: octave test.m runs ok. octave test2.m aborts with the following. test is basically test2 with the function call folded into the main code. The code is matlab code I'm trying to run in octave that I haven't explored very much. GNU Octave, version 2.1.71 (i686-pc-linux-gnu). Copyright (C) 2005 John W. Eaton. This is free software; see the source code for copying conditions. There is ABSOLUTELY NO WARRANTY; not even for MERCHANTIBILITY or FITNESS FOR A PARTICULAR PURPOSE. For details, type `warranty'. Additional information about Octave is available at http://www.octave.org. Please contribute if you find this software useful. For more information, visit http://www.octave.org/help-wanted.html Report bugs to <bu...@oc...> (but first, please read http://www.octave.org/bugs.html to learn how to write a helpful report). *** glibc detected *** octave: double free or corruption (!prev): 0x09ce7748 *** ======= Backtrace: ========= /lib/libc.so.6[0x289124] /lib/libc.so.6(__libc_free+0x77)[0x28965f] /usr/libexec/octave/2.1.71/site/oct/i686-pc-linux-gnu/octave-forge/sparse.oct(oct_sparse_free+0x21)[0xd894fb] /usr/libexec/octave/2.1.71/site/oct/i686-pc-linux-gnu/octave-forge/sparse.oct(Destroy_CompCol_Matrix+0x32)[0xdbd9ff] /usr/libexec/octave/2.1.71/site/oct/i686-pc-linux-gnu/octave-forge/sparse.oct(_Z30oct_sparse_Destroy_SuperMatrix11SuperMatrix+0x52)[0xd89616] /usr/libexec/octave/2.1.71/site/oct/i686-pc-linux-gnu/octave-forge/sparse.oct(_ZN13octave_sparseD0Ev+0x40)[0xd7df18] /usr/lib/octave-2.1.71/liboctinterp.so(_ZN12octave_valueD1Ev+0x44)[0x417712a] /usr/lib/octave-2.1.71/liboctinterp.so(_ZSt8_DestroyIN9__gnu_cxx17__normal_iteratorIP12octave_valueSt6vectorIS2_SaIS2_EEEES5_EvT_S8_T0_+0x1a)[0x3f8439e] /usr/lib/octave-2.1.71/liboctinterp.so(_ZNSt6vectorI12octave_valueSaIS0_EEaSERKS2_+0x1cf)[0x3f8581f] /usr/lib/octave-2.1.71/liboctinterp.so(_ZN19tree_statement_list4evalEbi+0x14c)[0x4299d54] /usr/lib/octave-2.1.71/liboctinterp.so(_ZN20octave_user_function17do_multi_index_opEiRK17octave_value_list+0x553)[0x41a6d39] /usr/lib/octave-2.1.71/liboctinterp.so(_ZN20octave_user_function7subsrefERKSsRKSt4listI17octave_value_listSaIS3_EEi+0x23c)[0x41a7fb4] /usr/lib/octave-2.1.71/liboctinterp.so(_ZN12octave_value7subsrefERKSsRKSt4listI17octave_value_listSaIS3_EEi+0x9c)[0x4178d9a] /usr/lib/octave-2.1.71/liboctinterp.so(_ZN21tree_index_expression6rvalueEi+0x415)[0x4272a33] /usr/lib/octave-2.1.71/liboctinterp.so(_ZN21tree_index_expression6rvalueEv+0x3f)[0x4271549] /usr/lib/octave-2.1.71/liboctinterp.so(_ZN22tree_simple_assignment6rvalueEv+0x4f)[0x4256755] /usr/lib/octave-2.1.71/liboctinterp.so(_ZN22tree_simple_assignment6rvalueEi+0x603)[0x4259269] /usr/lib/octave-2.1.71/liboctinterp.so(_ZN14tree_statement4evalEbib+0x116)[0x42992ba] /usr/lib/octave-2.1.71/liboctinterp.so(_ZN19tree_statement_list4evalEbi+0x12e)[0x4299d36] /usr/lib/octave-2.1.71/liboctinterp.so(_Z9main_loopRKSs+0xec)[0x40e1c5e] /usr/lib/octave-2.1.71/liboctinterp.so(octave_main+0x11e7)[0x443de9d] octave(main+0x19)[0x804864d] /lib/libc.so.6(__libc_start_main+0xdf)[0x23ad5f] octave[0x80485b1] ======= Memory map: ======== 00111000-001a1000 r-xp 00000000 03:02 109433 /usr/lib/libfftw3.so.3.0.1 001a1000-001a5000 rwxp 00090000 03:02 109433 /usr/lib/libfftw3.so.3.0.1 001a5000-001ae000 r-xp 00000000 03:02 864932 /lib/libnss_files-2.3.5.so 001ae000-001af000 r-xp 00008000 03:02 864932 /lib/libnss_files-2.3.5.so 001af000-001b0000 rwxp 00009000 03:02 864932 /lib/libnss_files-2.3.5.so 00208000-00222000 r-xp 00000000 03:02 867425 /lib/ld-2.3.5.so 00222000-00223000 r-xp 00019000 03:02 867425 /lib/ld-2.3.5.so 00223000-00224000 rwxp 0001a000 03:02 867425 /lib/ld-2.3.5.so 00226000-00349000 r-xp 00000000 03:02 867426 /lib/libc-2.3.5.so 00349000-0034b000 r-xp 00123000 03:02 867426 /lib/libc-2.3.5.so 0034b000-0034d000 rwxp 00125000 03:02 867426 /lib/libc-2.3.5.so 0034d000-0034f000 rwxp 0034d000 00:00 0 00351000-00374000 r-xp 00000000 03:02 867427 /lib/libm-2.3.5.so 00374000-00375000 r-xp 00022000 03:02 867427 /lib/libm-2.3.5.so 00375000-00376000 rwxp 00023000 03:02 867427 /lib/libm-2.3.5.so 00378000-0037a000 r-xp 00000000 03:02 867428 /lib/libdl-2.3.5.so 0037a000-0037b000 r-xp 00001000 03:02 867428 /lib/libdl-2.3.5.so 0037b000-0037c000 rwxp 00002000 03:02 867428 /lib/libdl-2.3.5.so 0037e000-00390000 r-xp 00000000 03:02 111368 /usr/lib/libz.so.1.2.2.2 00390000-00391000 rwxp 00011000 03:02 111368 /usr/lib/libz.so.1.2.2.2 00398000-00399000 r-xp 00398000 00:00 0 00469000-00477000 r-xp 00000000 03:02 867435 /lib/libpthread-2.3.5.so 00477000-00478000 r-xp 0000d000 03:02 867435 /lib/libpthread-2.3.5.so 00478000-00479000 rwxp 0000e000 03:02 867435 /lib/libpthread-2.3.5.so 00479000-0047b000 rwxp 00479000 00:00 0 0048e000-004b5000 r-xp 00000000 03:02 110766 /usr/lib/libreadline.so.5.0 004b5000-004b9000 rwxp 00027000 03:02 110766 /usr/lib/libreadline.so.5.0 004b9000-004ba000 rwxp 004b9000 00:00 0 004bc000-004fe000 r-xp 00000000 03:02 128642 /usr/lib/octave-2.1.71/libcruft.so.2.1.71 004fe000-00502000 rwxp 00041000 03:02 128642 /usr/lib/octave-2.1.71/libcruft.so.2.1.71 00502000-00503000 rwxp 00502000 00:00 0 00505000-0055c000 r-xp 00000000 03:02 103091 /usr/lib/libgfortran.so.0.0.0 0055c000-0055e000 rwxp 00056000 03:02 103091 /usr/lib/libgfortran.so.0.0.0 0055e000-00562000 rwxp 0055e000 00:00 0 0057b000-0058a000 r-xp 00000000 03:02 867429 /lib/libresolv-2.3.5.so 0058a000-0058b000 r-xp 0000e000 03:02 867429 /lib/libresolv-2.3.5.so 0058b000-0058c000 rwxp 0000f000 03:02 867429 /lib/libresolv-2.3.5.so 0058c000-0058e000 rwxp 0058c000 00:00 0 00590000-00599000 r-xp 00000000 03:02 867440 /lib/libgcc_s-4.0.1-20050727.so.1 00599000-0059a000 rwxp 00009000 03:02 867440 /lib/libgcc_s-4.0.1-20050727.so.1 0059c000-0067c000 r-xp 00000000 03:02 111392 /usr/lib/libstdc++.so.6.0.5 0067c000-00681000 rwxp 000df000 03:02 111392 /usr/lib/libstdc++.so.6.0.5 00681000-00687000 rwxp 00681000 00:00 0 00689000-006df000 r-xp 00000000 03:02 99344 /usr/lib/libblas.so.3.0.3 006df000-006e0000 rwxp 00055000 03:02 99344 /usr/lib/libblas.so.3.0.3 0070a000-0070c000 r-xp 00000000 03:02 864925 /lib/libcom_err.so.2.1 0070c000-0070d000 rwxp 00001000 03:02 864925 /lib/libcom_err.so.2.1 00787000-0079d000 r-xp 00000000 03:02 201709 /usr/libexec/octave/2.1.71/site/oct/i686-pc-linux-gnu/octave-forge/dispatch.oct 0079d000-0079e000 rwxp 00016000 03:02 201709 /usr/libexec/octave/2.1.71/site/oct/i686-pc-linux-gnu/octave-forge/dispatch.oct 0097c000-009eb000 r-xp 00000000 03:02 105049 /usr/lib/libkrb5.so.3.2 009eb000-009ee000 rwxp 0006e000 03:02 105049 /usr/lib/libkrb5.so.3.2 009f0000-00a25000 r-xp 00000000 03:02 864979 /lib/libssl.so.0.9.7f 00a25000-00a28000 rwxp 00035000 03:02 864979 /lib/libssl.so.0.9.7f 00a2a000-00a41000 r-xp 00000000 03:02 105050 /usr/lib/libgssapi_krb5.so.2.2 00a41000-00a42000 rwxp 00017000 03:02 105050 /usr/lib/libgssapi_krb5.so.2.2 00cee000-00d11000 r-xp 00000000 03:02 111383 /usr/lib/libk5crypto.so.3.0 00d11000-00d12000 rwxp 00023000 03:02 111383 /usr/lib/libk5crypto.so.3.0 00d14000-00d16000 r-xp 00000000 03:02 106698 /usr/lib/libkrb5support.so.0.0 00d16000-00d17000 rwxp 00001000 03:02 106698 /usr/lib/libkrb5support.so.0.0 00d64000-00ddb000 r-xp 00000000 03:02 201832 /usr/libexec/octave/2.1.71/site/oct/i686-pc-linux-gnu/octave-forge/make_sparse.oct 00ddb000-00ddd000 rwxp 00077000 03:02 201832 /usr/libexec/octave/2.1.71/site/oct/i686-pc-linux-gnu/octave-forge/make_sparse.oct 02bdb000-02f92000 r-xp 00000000 03:02 99339 /usr/lib/liblapack.so.3.0.3 02f92000-02f95000 rwxp 003b7000 03:02 99339 /usr/lib/liblapack.so.3.0.3 02f95000-03099000 rwxp 02f95000 00:00 0 0309b000-03675000 r-xp 00000000 03:02 128643 /usr/lib/octave-2.1.71/liboctave.so.2.1.71 03675000-03681000 rwxp 005da000 03:02 128643 /usr/lib/octave-2.1.71/liboctave.so.2.1.71 03681000-03682000 rwxp 03681000 00:00 0 03dc0000-03dfe000 r-xp 00000000 03:02 109746 /usr/lib/libncurses.so.5.4 03dfe000-03e07000 rwxp 0003d000 03:02 109746 /usr/lib/libncurses.so.5.4 03e09000-0457d000 r-xp 00000000 03:02 128644 /usr/lib/octave-2.1.71/liboctinterp.so.2.1.71 0457d000-04599000 rwxp 00773000 03:02 128644 /usr/lib/octave-2.1.71/liboctinterp.so.2.1.71 04599000-0459b000 rwxp 04599000 00:00 0 0460f000-04707000 r-xp 00000000 03:02 867431 /lib/libcrypto.so.0.9.7f 04707000-04719000 rwxp 000f8000 03:02 867431 /lib/libcrypto.so.0.9.7f 04719000-0471c000 rwxp 04719000 00:00 0 064f8000-0662c000 r-xp 00000000 03:02 107290 /usr/lib/libhdf5.so.0.0.0 0662c000-0662f000 rwxp 00134000 03:02 107290 /usr/lib/libhdf5.so.0.0.0 08048000-08049000 r-xp 00000000 03:02 99342 /usr/bin/octave-2.1.71 08049000-0804d000 rw-p 00000000 03:02 99342 /usr/bin/octave-2.1.71 09152000-09d2a000 rw-p 09152000 00:00 0 [heap] b6c00000-b6c21000 rw-p b6c00000 00:00 0 b6c21000-b6d00000 ---p b6c21000 00:00 0 b6de6000-b7c4c000 rw-p b6de6000 00:00 0 b7c4c000-b7c4d000 r--p 00edd000 03:02 107632 /usr/lib/locale/locale-archive b7c4d000-b7c7e000 r--p 00e5c000 03:02 107632 /usr/lib/locale/locale-archive b7c7e000-b7e7e000 r--p 00000000 03:02 107632 /usr/lib/locale/locale-archive b7e7e000-b7fe1000 rw-p b7e7e000 00:00 0 b7ffb000-b7ffc000 rw-p b7ffb000 00:00 0 bfee7000-bfefc000 rw-p bfee7000 00:00 0 [stack] panic: Aborted -- stopping myself... attempting to save variables to `octave-core'... save to `octave-core' complete Abort -- Orion Poplawski System Administrator 303-415-9701 x222 Colorado Research Associates/NWRA FAX: 303-415-9702 3380 Mitchell Lane, Boulder CO 80301 http://www.co-ra.com |
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From: Paul K. <pki...@us...> - 2005-09-21 23:04:59
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Is 2.9.x octave available for Fedora? It has replacement code for the octave-forge sparse functions and the octave-forge functions are no longer supported [though you are welcome to provide patches if you want]. - Paul On Sep 21, 2005, at 5:19 PM, Orion Poplawski wrote: > Running octave 2.1.71 with octave-forge-2005-06.13 on Fedora Core 4. > With the attached files: > > octave test.m > > runs ok. > > octave test2.m > > aborts with the following. test is basically test2 with the function > call folded into the main code. The code is matlab code I'm trying to > run in octave that I haven't explored very much. > > GNU Octave, version 2.1.71 (i686-pc-linux-gnu). > Copyright (C) 2005 John W. Eaton. > This is free software; see the source code for copying conditions. > There is ABSOLUTELY NO WARRANTY; not even for MERCHANTIBILITY or > FITNESS FOR A PARTICULAR PURPOSE. For details, type `warranty'. > > Additional information about Octave is available at > http://www.octave.org. > > Please contribute if you find this software useful. > For more information, visit http://www.octave.org/help-wanted.html > > Report bugs to <bu...@oc...> (but first, please read > http://www.octave.org/bugs.html to learn how to write a helpful > report). > > *** glibc detected *** octave: double free or corruption (!prev): > 0x09ce7748 *** > ======= Backtrace: ========= > /lib/libc.so.6[0x289124] > /lib/libc.so.6(__libc_free+0x77)[0x28965f] > /usr/libexec/octave/2.1.71/site/oct/i686-pc-linux-gnu/octave-forge/ > sparse.oct(oct_sparse_free+0x21)[0xd894fb] > /usr/libexec/octave/2.1.71/site/oct/i686-pc-linux-gnu/octave-forge/ > sparse.oct(Destroy_CompCol_Matrix+0x32)[0xdbd9ff] > /usr/libexec/octave/2.1.71/site/oct/i686-pc-linux-gnu/octave-forge/ > sparse.oct(_Z30oct_sparse_Destroy_SuperMatrix11SuperMatrix+0x52)[0xd896 > 16] > /usr/libexec/octave/2.1.71/site/oct/i686-pc-linux-gnu/octave-forge/ > sparse.oct(_ZN13octave_sparseD0Ev+0x40)[0xd7df18] > /usr/lib/octave-2.1.71/ > liboctinterp.so(_ZN12octave_valueD1Ev+0x44)[0x417712a] > /usr/lib/octave-2.1.71/ > liboctinterp.so(_ZSt8_DestroyIN9__gnu_cxx17__normal_iteratorIP12octave_ > valueSt6vectorIS2_SaIS2_EEEES5_EvT_S8_T0_+0x1a)[0x3f8439e] > /usr/lib/octave-2.1.71/ > liboctinterp.so(_ZNSt6vectorI12octave_valueSaIS0_EEaSERKS2_+0x1cf)[0x3f > 8581f] > /usr/lib/octave-2.1.71/ > liboctinterp.so(_ZN19tree_statement_list4evalEbi+0x14c)[0x4299d54] > /usr/lib/octave-2.1.71/ > liboctinterp.so(_ZN20octave_user_function17do_multi_index_opEiRK17octav > e_value_list+0x553)[0x41a6d39] > /usr/lib/octave-2.1.71/ > liboctinterp.so(_ZN20octave_user_function7subsrefERKSsRKSt4listI17octav > e_value_listSaIS3_EEi+0x23c)[0x41a7fb4] > /usr/lib/octave-2.1.71/ > liboctinterp.so(_ZN12octave_value7subsrefERKSsRKSt4listI17octave_value_ > listSaIS3_EEi+0x9c)[0x4178d9a] > /usr/lib/octave-2.1.71/ > liboctinterp.so(_ZN21tree_index_expression6rvalueEi+0x415)[0x4272a33] > /usr/lib/octave-2.1.71/ > liboctinterp.so(_ZN21tree_index_expression6rvalueEv+0x3f)[0x4271549] > /usr/lib/octave-2.1.71/ > liboctinterp.so(_ZN22tree_simple_assignment6rvalueEv+0x4f)[0x4256755] > /usr/lib/octave-2.1.71/ > liboctinterp.so(_ZN22tree_simple_assignment6rvalueEi+0x603)[0x4259269] > /usr/lib/octave-2.1.71/ > liboctinterp.so(_ZN14tree_statement4evalEbib+0x116)[0x42992ba] > /usr/lib/octave-2.1.71/ > liboctinterp.so(_ZN19tree_statement_list4evalEbi+0x12e)[0x4299d36] > /usr/lib/octave-2.1.71/ > liboctinterp.so(_Z9main_loopRKSs+0xec)[0x40e1c5e] > /usr/lib/octave-2.1.71/liboctinterp.so(octave_main+0x11e7)[0x443de9d] > octave(main+0x19)[0x804864d] > /lib/libc.so.6(__libc_start_main+0xdf)[0x23ad5f] > octave[0x80485b1] > ======= Memory map: ======== > 00111000-001a1000 r-xp 00000000 03:02 109433 > /usr/lib/libfftw3.so.3.0.1 > 001a1000-001a5000 rwxp 00090000 03:02 109433 > /usr/lib/libfftw3.so.3.0.1 > 001a5000-001ae000 r-xp 00000000 03:02 864932 > /lib/libnss_files-2.3.5.so > 001ae000-001af000 r-xp 00008000 03:02 864932 > /lib/libnss_files-2.3.5.so > 001af000-001b0000 rwxp 00009000 03:02 864932 > /lib/libnss_files-2.3.5.so > 00208000-00222000 r-xp 00000000 03:02 867425 /lib/ld-2.3.5.so > 00222000-00223000 r-xp 00019000 03:02 867425 /lib/ld-2.3.5.so > 00223000-00224000 rwxp 0001a000 03:02 867425 /lib/ld-2.3.5.so > 00226000-00349000 r-xp 00000000 03:02 867426 /lib/libc-2.3.5.so > 00349000-0034b000 r-xp 00123000 03:02 867426 /lib/libc-2.3.5.so > 0034b000-0034d000 rwxp 00125000 03:02 867426 /lib/libc-2.3.5.so > 0034d000-0034f000 rwxp 0034d000 00:00 0 > 00351000-00374000 r-xp 00000000 03:02 867427 /lib/libm-2.3.5.so > 00374000-00375000 r-xp 00022000 03:02 867427 /lib/libm-2.3.5.so > 00375000-00376000 rwxp 00023000 03:02 867427 /lib/libm-2.3.5.so > 00378000-0037a000 r-xp 00000000 03:02 867428 /lib/libdl-2.3.5.so > 0037a000-0037b000 r-xp 00001000 03:02 867428 /lib/libdl-2.3.5.so > 0037b000-0037c000 rwxp 00002000 03:02 867428 /lib/libdl-2.3.5.so > 0037e000-00390000 r-xp 00000000 03:02 111368 > /usr/lib/libz.so.1.2.2.2 > 00390000-00391000 rwxp 00011000 03:02 111368 > /usr/lib/libz.so.1.2.2.2 > 00398000-00399000 r-xp 00398000 00:00 0 > 00469000-00477000 r-xp 00000000 03:02 867435 > /lib/libpthread-2.3.5.so > 00477000-00478000 r-xp 0000d000 03:02 867435 > /lib/libpthread-2.3.5.so > 00478000-00479000 rwxp 0000e000 03:02 867435 > /lib/libpthread-2.3.5.so > 00479000-0047b000 rwxp 00479000 00:00 0 > 0048e000-004b5000 r-xp 00000000 03:02 110766 > /usr/lib/libreadline.so.5.0 > 004b5000-004b9000 rwxp 00027000 03:02 110766 > /usr/lib/libreadline.so.5.0 > 004b9000-004ba000 rwxp 004b9000 00:00 0 > 004bc000-004fe000 r-xp 00000000 03:02 128642 > /usr/lib/octave-2.1.71/libcruft.so.2.1.71 > 004fe000-00502000 rwxp 00041000 03:02 128642 > /usr/lib/octave-2.1.71/libcruft.so.2.1.71 > 00502000-00503000 rwxp 00502000 00:00 0 > 00505000-0055c000 r-xp 00000000 03:02 103091 > /usr/lib/libgfortran.so.0.0.0 > 0055c000-0055e000 rwxp 00056000 03:02 103091 > /usr/lib/libgfortran.so.0.0.0 > 0055e000-00562000 rwxp 0055e000 00:00 0 > 0057b000-0058a000 r-xp 00000000 03:02 867429 > /lib/libresolv-2.3.5.so > 0058a000-0058b000 r-xp 0000e000 03:02 867429 > /lib/libresolv-2.3.5.so > 0058b000-0058c000 rwxp 0000f000 03:02 867429 > /lib/libresolv-2.3.5.so > 0058c000-0058e000 rwxp 0058c000 00:00 0 > 00590000-00599000 r-xp 00000000 03:02 867440 > /lib/libgcc_s-4.0.1-20050727.so.1 > 00599000-0059a000 rwxp 00009000 03:02 867440 > /lib/libgcc_s-4.0.1-20050727.so.1 > 0059c000-0067c000 r-xp 00000000 03:02 111392 > /usr/lib/libstdc++.so.6.0.5 > 0067c000-00681000 rwxp 000df000 03:02 111392 > /usr/lib/libstdc++.so.6.0.5 > 00681000-00687000 rwxp 00681000 00:00 0 > 00689000-006df000 r-xp 00000000 03:02 99344 > /usr/lib/libblas.so.3.0.3 > 006df000-006e0000 rwxp 00055000 03:02 99344 > /usr/lib/libblas.so.3.0.3 > 0070a000-0070c000 r-xp 00000000 03:02 864925 /lib/libcom_err.so.2.1 > 0070c000-0070d000 rwxp 00001000 03:02 864925 /lib/libcom_err.so.2.1 > 00787000-0079d000 r-xp 00000000 03:02 201709 > /usr/libexec/octave/2.1.71/site/oct/i686-pc-linux-gnu/octave-forge/ > dispatch.oct > 0079d000-0079e000 rwxp 00016000 03:02 201709 > /usr/libexec/octave/2.1.71/site/oct/i686-pc-linux-gnu/octave-forge/ > dispatch.oct > 0097c000-009eb000 r-xp 00000000 03:02 105049 > /usr/lib/libkrb5.so.3.2 > 009eb000-009ee000 rwxp 0006e000 03:02 105049 > /usr/lib/libkrb5.so.3.2 > 009f0000-00a25000 r-xp 00000000 03:02 864979 /lib/libssl.so.0.9.7f > 00a25000-00a28000 rwxp 00035000 03:02 864979 /lib/libssl.so.0.9.7f > 00a2a000-00a41000 r-xp 00000000 03:02 105050 > /usr/lib/libgssapi_krb5.so.2.2 > 00a41000-00a42000 rwxp 00017000 03:02 105050 > /usr/lib/libgssapi_krb5.so.2.2 > 00cee000-00d11000 r-xp 00000000 03:02 111383 > /usr/lib/libk5crypto.so.3.0 > 00d11000-00d12000 rwxp 00023000 03:02 111383 > /usr/lib/libk5crypto.so.3.0 > 00d14000-00d16000 r-xp 00000000 03:02 106698 > /usr/lib/libkrb5support.so.0.0 > 00d16000-00d17000 rwxp 00001000 03:02 106698 > /usr/lib/libkrb5support.so.0.0 > 00d64000-00ddb000 r-xp 00000000 03:02 201832 > /usr/libexec/octave/2.1.71/site/oct/i686-pc-linux-gnu/octave-forge/ > make_sparse.oct > 00ddb000-00ddd000 rwxp 00077000 03:02 201832 > /usr/libexec/octave/2.1.71/site/oct/i686-pc-linux-gnu/octave-forge/ > make_sparse.oct > 02bdb000-02f92000 r-xp 00000000 03:02 99339 > /usr/lib/liblapack.so.3.0.3 > 02f92000-02f95000 rwxp 003b7000 03:02 99339 > /usr/lib/liblapack.so.3.0.3 > 02f95000-03099000 rwxp 02f95000 00:00 0 > 0309b000-03675000 r-xp 00000000 03:02 128643 > /usr/lib/octave-2.1.71/liboctave.so.2.1.71 > 03675000-03681000 rwxp 005da000 03:02 128643 > /usr/lib/octave-2.1.71/liboctave.so.2.1.71 > 03681000-03682000 rwxp 03681000 00:00 0 > 03dc0000-03dfe000 r-xp 00000000 03:02 109746 > /usr/lib/libncurses.so.5.4 > 03dfe000-03e07000 rwxp 0003d000 03:02 109746 > /usr/lib/libncurses.so.5.4 > 03e09000-0457d000 r-xp 00000000 03:02 128644 > /usr/lib/octave-2.1.71/liboctinterp.so.2.1.71 > 0457d000-04599000 rwxp 00773000 03:02 128644 > /usr/lib/octave-2.1.71/liboctinterp.so.2.1.71 > 04599000-0459b000 rwxp 04599000 00:00 0 > 0460f000-04707000 r-xp 00000000 03:02 867431 > /lib/libcrypto.so.0.9.7f > 04707000-04719000 rwxp 000f8000 03:02 867431 > /lib/libcrypto.so.0.9.7f > 04719000-0471c000 rwxp 04719000 00:00 0 > 064f8000-0662c000 r-xp 00000000 03:02 107290 > /usr/lib/libhdf5.so.0.0.0 > 0662c000-0662f000 rwxp 00134000 03:02 107290 > /usr/lib/libhdf5.so.0.0.0 > 08048000-08049000 r-xp 00000000 03:02 99342 /usr/bin/octave-2.1.71 > 08049000-0804d000 rw-p 00000000 03:02 99342 /usr/bin/octave-2.1.71 > 09152000-09d2a000 rw-p 09152000 00:00 0 [heap] > b6c00000-b6c21000 rw-p b6c00000 00:00 0 > b6c21000-b6d00000 ---p b6c21000 00:00 0 > b6de6000-b7c4c000 rw-p b6de6000 00:00 0 > b7c4c000-b7c4d000 r--p 00edd000 03:02 107632 > /usr/lib/locale/locale-archive > b7c4d000-b7c7e000 r--p 00e5c000 03:02 107632 > /usr/lib/locale/locale-archive > b7c7e000-b7e7e000 r--p 00000000 03:02 107632 > /usr/lib/locale/locale-archive > b7e7e000-b7fe1000 rw-p b7e7e000 00:00 0 > b7ffb000-b7ffc000 rw-p b7ffb000 00:00 0 > bfee7000-bfefc000 rw-p bfee7000 00:00 0 [stack] > panic: Aborted -- stopping myself... > attempting to save variables to `octave-core'... > save to `octave-core' complete > Abort > > -- > Orion Poplawski > System Administrator 303-415-9701 x222 > Colorado Research Associates/NWRA FAX: 303-415-9702 > 3380 Mitchell Lane, Boulder CO 80301 http://www.co-ra.com > function [grid,xg,yg]=make_grid(minx,maxx,miny,maxy,dx,dy) > > xg=minx:dx:maxx; > yg=maxy:-dy:miny; > > k=0; > for x=xg > for y=yg > k=k+1; > grid(k,1)=x; > grid(k,2)=y; > end > end > > %%% function MedBhm_preproc.m > > %************************************************** > %**** Make grids for atm > %************************************************** > > [grdxyA,xgA,ygA]=make_grid(14.000,37.000,30.000,46.0000,.25,.25); > nxA=length(xgA)-2; > nyA=length(ygA)-2; > > MtilB=make_MtilB_sparse(nxA,nyA); > %%% function MedBhm_preproc.m > > %************************************************** > %**** Make grids for atm > %************************************************** > > [grdxyA,xgA,ygA]=make_grid(14.000,37.000,30.000,46.0000,.25,.25); > nx=length(xgA)-2; > ny=length(ygA)-2; > > Nx=nx+2; > Ny=ny+2; > N=Nx*Ny; > n=nx*ny; > NB=2*Nx+2*Ny-4; > > MtilB=sparse(NB,N); > > for k=1:Ny > MtilB(k,k)=1; > MtilB(Ny+Nx-2+k,N+1-k)=1; > end > > for i=1:nx > MtilB(Ny+i,Ny*(i+1))=1; > MtilB(NB+1-i,(Ny*i)+1)=1; > end > > function MtilB=make_MtilB_sparse(nx,ny) > > Nx=nx+2; > Ny=ny+2; > N=Nx*Ny; > n=nx*ny; > NB=2*Nx+2*Ny-4; > > MtilB=sparse(NB,N); > > for k=1:Ny > MtilB(k,k)=1; > MtilB(Ny+Nx-2+k,N+1-k)=1; > end > > for i=1:nx > MtilB(Ny+i,Ny*(i+1))=1; > MtilB(NB+1-i,(Ny*i)+1)=1; > end > |
|
From: Quentin S. <qsp...@ie...> - 2005-09-22 01:42:47
|
Paul Kienzle wrote: > Is 2.9.x octave available for Fedora? It has replacement code for > the octave-forge sparse functions and the octave-forge functions are > no longer supported [though you are welcome to provide patches if > you want]. 2.9.3 can is available in the Fedora development tree. I don't plan to move 2.9.x into the main FC-4 tree until it is considered stable (though of course it really is pretty stable in practice). -Quentin |
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From: Orion P. <or...@co...> - 2005-09-22 16:32:51
|
Quentin Spencer wrote:
>
> 2.9.3 can is available in the Fedora development tree. I don't plan to
> move 2.9.x into the main FC-4 tree until it is considered stable (though
> of course it really is pretty stable in practice).
Quentin -
Would you mind producing some octave-2.9.3 rpms for FC4? I've been
trying to build the stuff in extras/devel on FC4 and running into
problems, particularly with some blas issues.
- Orion
--
Orion Poplawski
System Administrator 303-415-9701 x222
Colorado Research Associates/NWRA FAX: 303-415-9702
3380 Mitchell Lane, Boulder CO 80301 http://www.co-ra.com
|
|
From: Quentin S. <qsp...@ie...> - 2005-09-22 16:47:18
|
Orion Poplawski wrote: > Quentin Spencer wrote: > >> >> 2.9.3 can is available in the Fedora development tree. I don't plan >> to move 2.9.x into the main FC-4 tree until it is considered stable >> (though of course it really is pretty stable in practice). > > > Quentin - > > Would you mind producing some octave-2.9.3 rpms for FC4? I've been > trying to build the stuff in extras/devel on FC4 and running into > problems, particularly with some blas issues. I think your problems are caused by the fact that Fedora's lapack was recently modified to split blas and lapack into -devel packages, which it previously hadn't done. Installing those should solve your problems. I'll modify the spec files to update the build requirements, and build an octave-2.9.3 rpm, however you may be able to build your own before I can finish mine (unless I uncover other problems). -Quentin |
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From: Orion P. <or...@co...> - 2005-09-28 20:08:17
|
Paul Kienzle wrote: > Is 2.9.x octave available for Fedora? It has replacement code for the > octave-forge sparse functions and the octave-forge functions are no > longer supported [though you are welcome to provide patches if you want]. > > - Paul Is it possible to prevent octave-forge sparse code from overriding the octave builtins? I installed octave 2.9.3 and the sparse code worked. Then I installed octave-forge on top and now I'm getting the same error in the octave-forge sparse matrix code as before. -- Orion Poplawski System Administrator 303-415-9701 x222 Colorado Research Associates/NWRA FAX: 303-415-9702 3380 Mitchell Lane, Boulder CO 80301 http://www.co-ra.com |
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From: Stefan v. d. W. <st...@su...> - 2005-09-28 21:01:04
|
On Wed, Sep 28, 2005 at 02:08:09PM -0600, Orion Poplawski wrote: > Paul Kienzle wrote: > >Is 2.9.x octave available for Fedora? It has replacement code for the= =20 > >octave-forge sparse functions and the octave-forge functions are no =20 > >longer supported [though you are welcome to provide patches if you wa= nt]. > > > >- Paul >=20 > Is it possible to prevent octave-forge sparse code from overriding the=20 > octave builtins? I installed octave 2.9.3 and the sparse code worked.=20 > Then I installed octave-forge on top and now I'm getting the same error= =20 > in the octave-forge sparse matrix code as before. You can prevent certain parts of octave-forge from being installed by putting a "NOINSTALL" file in the appropriate.directory (i.e. main/sparse). Regards St=E9fan |
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From: Orion P. <or...@co...> - 2005-09-28 21:18:59
|
Stefan van der Walt wrote: > > You can prevent certain parts of octave-forge from being installed by > putting a "NOINSTALL" file in the appropriate.directory > (i.e. main/sparse). > Perhaps it is time to start putting NOINSTALL in those directories that are no longer needed in 2.9.X? A quick look seems to point to main/sparse and main/cell. Others? -- Orion Poplawski System Administrator 303-415-9701 x222 Colorado Research Associates/NWRA FAX: 303-415-9702 3380 Mitchell Lane, Boulder CO 80301 http://www.co-ra.com |
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From: David B. <Dav...@mo...> - 2005-09-29 08:01:55
|
Orion Poplawski wrote: > Stefan van der Walt wrote: > >> >> You can prevent certain parts of octave-forge from being installed by >> putting a "NOINSTALL" file in the appropriate.directory >> (i.e. main/sparse). >> > > Perhaps it is time to start putting NOINSTALL in those directories > that are no longer needed in 2.9.X? A quick look seems to point to > main/sparse and main/cell. Others? > > Don't put it in main/cell as cell2mat.m is not in octave yet, though as it is a core function of matlab I imagine it soon will be.. In fact there are some iterative functions in main/sparse that are not in octave but are still useful, so I'd even be careful about putting NOINSTALL in main/sparse. The correct solution is probably to completely decruft octave-forge for a 2.9.x tree, including removing functions merged with octave. Make a specific 2.9.x octave-forge release then use Soren's packaging system to start to breaking octave-forge apart into seperate packages... Cheers David -- David Bateman Dav...@mo... Motorola Labs - Paris +33 1 69 35 48 04 (Ph) Parc Les Algorithmes, Commune de St Aubin +33 1 69 35 77 01 (Fax) 91193 Gif-Sur-Yvette FRANCE The information contained in this communication has been classified as: [x] General Business Information [ ] Motorola Internal Use Only [ ] Motorola Confidential Proprietary |
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From: David B. <Dav...@mo...> - 2005-09-22 12:22:59
|
Orion Poplawski wrote: > Running octave 2.1.71 with octave-forge-2005-06.13 on Fedora Core 4. > With the attached files: > > octave test.m > > runs ok. > > octave test2.m > > aborts with the following. test is basically test2 with the function > call folded into the main code. The code is matlab code I'm trying to > run in octave that I haven't explored very much. Just for information, on the latest octave CVS (pretty similar to 2.9.3), test2.m ran without problem and gave the results octave:2> whos *** currently compiled functions: Prot Name Size Bytes Class ==== ==== ==== ===== ===== rwd make_MtilB_sparse -1x-1 0 user-defined function rwd make_grid -1x-1 0 user-defined function Total is 2 elements using 0 bytes *** local user variables: Prot Name Size Bytes Class ==== ==== ==== ===== ===== rwd MtilB 312x6045 27928 sparse matrix rw- __nargin__ 1x1 8 scalar rwd grdxyA 6045x2 96720 matrix rwd nxA 1x1 8 scalar rwd nyA 1x1 8 scalar rwd xgA 1x93 24 range rwd ygA 1x65 24 range Total is 12563 elements using 124720 bytes I have no idea what the results are supposed to be, but this appears to work.. Cheers David -- David Bateman Dav...@mo... Motorola Labs - Paris +33 1 69 35 48 04 (Ph) Parc Les Algorithmes, Commune de St Aubin +33 1 69 35 77 01 (Fax) 91193 Gif-Sur-Yvette FRANCE The information contained in this communication has been classified as: [x] General Business Information [ ] Motorola Internal Use Only [ ] Motorola Confidential Proprietary |
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