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From: <carandraug@us...>  20120331 22:40:47

Revision: 10124 http://octave.svn.sourceforge.net/octave/?rev=10124&view=rev Author: carandraug Date: 20120331 22:40:41 +0000 (Sat, 31 Mar 2012) Log Message:  generate_html: specify to not autoload package on DESCRIPTION and finally make new release Modified Paths:  trunk/octaveforge/extra/generate_html/DESCRIPTION Modified: trunk/octaveforge/extra/generate_html/DESCRIPTION ===================================================================  trunk/octaveforge/extra/generate_html/DESCRIPTION 20120331 22:34:10 UTC (rev 10123) +++ trunk/octaveforge/extra/generate_html/DESCRIPTION 20120331 22:40:41 UTC (rev 10124) @@ 8,6 +8,7 @@ contain the help texts for a set of functions. The package is designed to be as general as possible, but also contains convenience functions for generating a set of pages for entire packages. +Autoload: no Depends: octave (>= 3.2.0) SystemRequirements: makeinfo [Debian] texinfo License: GPLv3+ This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. 
From: <carandraug@us...>  20120331 22:34:16

Revision: 10123 http://octave.svn.sourceforge.net/octave/?rev=10123&view=rev Author: carandraug Date: 20120331 22:34:10 +0000 (Sat, 31 Mar 2012) Log Message:  generate_package_html: bugfix when interpreting the information from autoload Modified Paths:  trunk/octaveforge/extra/generate_html/NEWS trunk/octaveforge/extra/generate_html/inst/generate_package_html.m Modified: trunk/octaveforge/extra/generate_html/NEWS ===================================================================  trunk/octaveforge/extra/generate_html/NEWS 20120331 21:58:47 UTC (rev 10122) +++ trunk/octaveforge/extra/generate_html/NEWS 20120331 22:34:10 UTC (rev 10123) @@ 5,5 +5,8 @@ package that the function belongs too and have a link for the package main page. + ** Autoload field when generating a package index.html page is now + correct. + ** keywords on the `See also:' will be interpreted properly (rather than just function names). Modified: trunk/octaveforge/extra/generate_html/inst/generate_package_html.m ===================================================================  trunk/octaveforge/extra/generate_html/inst/generate_package_html.m 20120331 21:58:47 UTC (rev 10122) +++ trunk/octaveforge/extra/generate_html/inst/generate_package_html.m 20120331 22:34:10 UTC (rev 10123) @@ 1,4 +1,4 @@ ## Copyright (C) 2008 Soren Hauberg <soren@...> +## Copyright (C) 2008 Soren Hauberg <soren@...>a ## ## This program is free software; you can redistribute it and/or modify it ## under the terms of the GNU General Public License as published by @@ 371,15 +371,16 @@ if (isfield (list, "buildrequires")) fprintf (fid, " <tr><td>Build Dependencies:</td><td>%s</td></tr>\n", list.buildrequires); endif   if (isfield (list, "autoload"))  if (list.autoload)  a = "Yes";  else  a = "No";  endif  fprintf (fid, " <tr><td>Autoload:</td><td>%s</td></tr>\n", a); + + ## if the package does not specify, then it is not autoloaded. Also, sometimes + ## the value is 1 (true) but other times the value is a string + if (isfield (list, "autoload") && (list.autoload == 1  + any (strcmpi ({"yes", "on", "true"}, list.autoload)))) + a = "Yes"; + else + a = "No"; endif + fprintf (fid, " <tr><td>Autoload:</td><td>%s</td></tr>\n", a); fprintf (fid, " </table>\n\n"); This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. 
From: <carandraug@us...>  20120331 21:58:53

Revision: 10122 http://octave.svn.sourceforge.net/octave/?rev=10122&view=rev Author: carandraug Date: 20120331 21:58:47 +0000 (Sat, 31 Mar 2012) Log Message:  generate_html: bump package version for release Modified Paths:  trunk/octaveforge/extra/generate_html/DESCRIPTION Modified: trunk/octaveforge/extra/generate_html/DESCRIPTION ===================================================================  trunk/octaveforge/extra/generate_html/DESCRIPTION 20120331 21:58:07 UTC (rev 10121) +++ trunk/octaveforge/extra/generate_html/DESCRIPTION 20120331 21:58:47 UTC (rev 10122) @@ 1,6 +1,6 @@ Name: generate_html Version: 0.1.3 Date: 20100225 +Version: 0.1.4 +Date: 20120331 Author: Søren Hauberg <soren@...> Maintainer: Søren Hauberg <soren@...> Title: Generate HTML web page from help texts This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. 
From: <carandraug@us...>  20120331 21:58:13

Revision: 10121 http://octave.svn.sourceforge.net/octave/?rev=10121&view=rev Author: carandraug Date: 20120331 21:58:07 +0000 (Sat, 31 Mar 2012) Log Message:  generate_html/DESCRIPTION: be specific where makeinfo is on Debian system Modified Paths:  trunk/octaveforge/extra/generate_html/DESCRIPTION Modified: trunk/octaveforge/extra/generate_html/DESCRIPTION ===================================================================  trunk/octaveforge/extra/generate_html/DESCRIPTION 20120331 21:56:22 UTC (rev 10120) +++ trunk/octaveforge/extra/generate_html/DESCRIPTION 20120331 21:58:07 UTC (rev 10121) @@ 1,14 +1,13 @@ Name: generate_html Version: 0.1.3 Date: 20100225 Author: Søren Hauberg Maintainer: Søren Hauberg +Author: Søren Hauberg <soren@...> +Maintainer: Søren Hauberg <soren@...> Title: Generate HTML web page from help texts Description: This package provides functions for generating HTML pages that contain the help texts for a set of functions. The package is designed to be as general as possible, but also contains convenience functions for generating a set of pages for entire packages. Depends: octave (>= 3.2.0) SystemRequirements: makeinfo License: GPL version 3 or later  +SystemRequirements: makeinfo [Debian] texinfo +License: GPLv3+ This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. 
From: <carandraug@us...>  20120331 21:56:30

Revision: 10120 http://octave.svn.sourceforge.net/octave/?rev=10120&view=rev Author: carandraug Date: 20120331 21:56:22 +0000 (Sat, 31 Mar 2012) Log Message:  generate_html: adding email address to copyright notice Modified Paths:  trunk/octaveforge/extra/generate_html/inst/generate_alphabet.m trunk/octaveforge/extra/generate_html/inst/generate_html_manual.m trunk/octaveforge/extra/generate_html/inst/generate_operators.m trunk/octaveforge/extra/generate_html/inst/generate_package_html.m trunk/octaveforge/extra/generate_html/inst/get_html_options.m trunk/octaveforge/extra/generate_html/inst/html_help_text.m trunk/octaveforge/extra/generate_html/inst/private/find_package.m trunk/octaveforge/extra/generate_html/inst/private/get_alpha_database.m trunk/octaveforge/extra/generate_html/inst/private/get_header_title_and_footer.m trunk/octaveforge/extra/generate_html/inst/private/get_index_header_title_and_footer.m trunk/octaveforge/extra/generate_html/inst/private/get_overview_filename.m trunk/octaveforge/extra/generate_html/inst/private/get_overview_header_title_and_footer.m trunk/octaveforge/extra/generate_html/inst/private/get_pkg_list_item_filename.m trunk/octaveforge/extra/generate_html/inst/private/get_root.m trunk/octaveforge/extra/generate_html/inst/private/get_texi_conf.m trunk/octaveforge/extra/generate_html/inst/private/get_txi_files.m trunk/octaveforge/extra/generate_html/inst/private/mk_chapter_dir.m trunk/octaveforge/extra/generate_html/inst/private/mk_function_dir.m trunk/octaveforge/extra/generate_html/inst/private/mk_various_dir.m trunk/octaveforge/extra/generate_html/inst/private/octave_forge_seealso.m trunk/octaveforge/extra/generate_html/inst/texi2html.m trunk/octaveforge/extra/generate_html/inst/txi2index.m trunk/octaveforge/extra/generate_html/inst/txi2reference.m Modified: trunk/octaveforge/extra/generate_html/inst/generate_alphabet.m ===================================================================  trunk/octaveforge/extra/generate_html/inst/generate_alphabet.m 20120331 21:44:54 UTC (rev 10119) +++ trunk/octaveforge/extra/generate_html/inst/generate_alphabet.m 20120331 21:56:22 UTC (rev 10120) @@ 1,4 +1,4 @@ ## Copyright (C) 2008 Soren Hauberg +## Copyright (C) 2008 Soren Hauberg <soren@...> ## ## This program is free software; you can redistribute it and/or modify it ## under the terms of the GNU General Public License as published by Modified: trunk/octaveforge/extra/generate_html/inst/generate_html_manual.m ===================================================================  trunk/octaveforge/extra/generate_html/inst/generate_html_manual.m 20120331 21:44:54 UTC (rev 10119) +++ trunk/octaveforge/extra/generate_html/inst/generate_html_manual.m 20120331 21:56:22 UTC (rev 10120) @@ 1,4 +1,4 @@ ## Copyright (C) 2008 Soren Hauberg +## Copyright (C) 2008 Soren Hauberg <soren@...> ## ## This program is free software; you can redistribute it and/or modify it ## under the terms of the GNU General Public License as published by Modified: trunk/octaveforge/extra/generate_html/inst/generate_operators.m ===================================================================  trunk/octaveforge/extra/generate_html/inst/generate_operators.m 20120331 21:44:54 UTC (rev 10119) +++ trunk/octaveforge/extra/generate_html/inst/generate_operators.m 20120331 21:56:22 UTC (rev 10120) @@ 1,4 +1,4 @@ ## Copyright (C) 2008 Soren Hauberg +## Copyright (C) 2008 Soren Hauberg <soren@...> ## ## This program is free software; you can redistribute it and/or modify it ## under the terms of the GNU General Public License as published by Modified: trunk/octaveforge/extra/generate_html/inst/generate_package_html.m ===================================================================  trunk/octaveforge/extra/generate_html/inst/generate_package_html.m 20120331 21:44:54 UTC (rev 10119) +++ trunk/octaveforge/extra/generate_html/inst/generate_package_html.m 20120331 21:56:22 UTC (rev 10120) @@ 1,4 +1,4 @@ ## Copyright (C) 2008 Soren Hauberg +## Copyright (C) 2008 Soren Hauberg <soren@...> ## ## This program is free software; you can redistribute it and/or modify it ## under the terms of the GNU General Public License as published by Modified: trunk/octaveforge/extra/generate_html/inst/get_html_options.m ===================================================================  trunk/octaveforge/extra/generate_html/inst/get_html_options.m 20120331 21:44:54 UTC (rev 10119) +++ trunk/octaveforge/extra/generate_html/inst/get_html_options.m 20120331 21:56:22 UTC (rev 10120) @@ 1,4 +1,4 @@ ## Copyright (C) 2008 Soren Hauberg +## Copyright (C) 2008 Soren Hauberg <soren@...> ## ## This program is free software; you can redistribute it and/or modify it ## under the terms of the GNU General Public License as published by Modified: trunk/octaveforge/extra/generate_html/inst/html_help_text.m ===================================================================  trunk/octaveforge/extra/generate_html/inst/html_help_text.m 20120331 21:44:54 UTC (rev 10119) +++ trunk/octaveforge/extra/generate_html/inst/html_help_text.m 20120331 21:56:22 UTC (rev 10120) @@ 1,4 +1,4 @@ ## Copyright (C) 2008 Soren Hauberg +## Copyright (C) 2008 Soren Hauberg <soren@...> ## ## This program is free software; you can redistribute it and/or modify it ## under the terms of the GNU General Public License as published by Modified: trunk/octaveforge/extra/generate_html/inst/private/find_package.m ===================================================================  trunk/octaveforge/extra/generate_html/inst/private/find_package.m 20120331 21:44:54 UTC (rev 10119) +++ trunk/octaveforge/extra/generate_html/inst/private/find_package.m 20120331 21:56:22 UTC (rev 10120) @@ 1,4 +1,4 @@ ## Copyright (C) 2009 Soren Hauberg +## Copyright (C) 2009 Soren Hauberg <soren@...> ## ## This program is free software; you can redistribute it and/or modify it ## under the terms of the GNU General Public License as published by Modified: trunk/octaveforge/extra/generate_html/inst/private/get_alpha_database.m ===================================================================  trunk/octaveforge/extra/generate_html/inst/private/get_alpha_database.m 20120331 21:44:54 UTC (rev 10119) +++ trunk/octaveforge/extra/generate_html/inst/private/get_alpha_database.m 20120331 21:56:22 UTC (rev 10120) @@ 1,4 +1,4 @@ ## Copyright (C) 2009 Soren Hauberg +## Copyright (C) 2009 Soren Hauberg <soren@...> ## ## This program is free software; you can redistribute it and/or modify it ## under the terms of the GNU General Public License as published by Modified: trunk/octaveforge/extra/generate_html/inst/private/get_header_title_and_footer.m ===================================================================  trunk/octaveforge/extra/generate_html/inst/private/get_header_title_and_footer.m 20120331 21:44:54 UTC (rev 10119) +++ trunk/octaveforge/extra/generate_html/inst/private/get_header_title_and_footer.m 20120331 21:56:22 UTC (rev 10120) @@ 1,4 +1,4 @@ ## Copyright (C) 2008 Soren Hauberg +## Copyright (C) 2008 Soren Hauberg <soren@...> ## ## This program is free software; you can redistribute it and/or modify it ## under the terms of the GNU General Public License as published by Modified: trunk/octaveforge/extra/generate_html/inst/private/get_index_header_title_and_footer.m ===================================================================  trunk/octaveforge/extra/generate_html/inst/private/get_index_header_title_and_footer.m 20120331 21:44:54 UTC (rev 10119) +++ trunk/octaveforge/extra/generate_html/inst/private/get_index_header_title_and_footer.m 20120331 21:56:22 UTC (rev 10120) @@ 1,4 +1,4 @@ ## Copyright (C) 2008 Soren Hauberg +## Copyright (C) 2008 Soren Hauberg <soren@...> ## ## This program is free software; you can redistribute it and/or modify it ## under the terms of the GNU General Public License as published by Modified: trunk/octaveforge/extra/generate_html/inst/private/get_overview_filename.m ===================================================================  trunk/octaveforge/extra/generate_html/inst/private/get_overview_filename.m 20120331 21:44:54 UTC (rev 10119) +++ trunk/octaveforge/extra/generate_html/inst/private/get_overview_filename.m 20120331 21:56:22 UTC (rev 10120) @@ 1,4 +1,4 @@ ## Copyright (C) 2008 Soren Hauberg +## Copyright (C) 2008 Soren Hauberg <soren@...> ## ## This program is free software; you can redistribute it and/or modify it ## under the terms of the GNU General Public License as published by Modified: trunk/octaveforge/extra/generate_html/inst/private/get_overview_header_title_and_footer.m ===================================================================  trunk/octaveforge/extra/generate_html/inst/private/get_overview_header_title_and_footer.m 20120331 21:44:54 UTC (rev 10119) +++ trunk/octaveforge/extra/generate_html/inst/private/get_overview_header_title_and_footer.m 20120331 21:56:22 UTC (rev 10120) @@ 1,4 +1,4 @@ ## Copyright (C) 2008 Soren Hauberg +## Copyright (C) 2008 Soren Hauberg <soren@...> ## ## This program is free software; you can redistribute it and/or modify it ## under the terms of the GNU General Public License as published by Modified: trunk/octaveforge/extra/generate_html/inst/private/get_pkg_list_item_filename.m ===================================================================  trunk/octaveforge/extra/generate_html/inst/private/get_pkg_list_item_filename.m 20120331 21:44:54 UTC (rev 10119) +++ trunk/octaveforge/extra/generate_html/inst/private/get_pkg_list_item_filename.m 20120331 21:56:22 UTC (rev 10120) @@ 1,4 +1,4 @@ ## Copyright (C) 2009 Carlo de Falco +## Copyright (C) 2009 Carlo de Falco <carlo.defalco@...> ## ## This program is free software; you can redistribute it and/or modify it ## under the terms of the GNU General Public License as published by Modified: trunk/octaveforge/extra/generate_html/inst/private/get_root.m ===================================================================  trunk/octaveforge/extra/generate_html/inst/private/get_root.m 20120331 21:44:54 UTC (rev 10119) +++ trunk/octaveforge/extra/generate_html/inst/private/get_root.m 20120331 21:56:22 UTC (rev 10120) @@ 1,4 +1,4 @@ ## Copyright (C) 2008 Soren Hauberg +## Copyright (C) 2008 Soren Hauberg <soren@...> ## ## This program is free software; you can redistribute it and/or modify it ## under the terms of the GNU General Public License as published by Modified: trunk/octaveforge/extra/generate_html/inst/private/get_texi_conf.m ===================================================================  trunk/octaveforge/extra/generate_html/inst/private/get_texi_conf.m 20120331 21:44:54 UTC (rev 10119) +++ trunk/octaveforge/extra/generate_html/inst/private/get_texi_conf.m 20120331 21:56:22 UTC (rev 10120) @@ 1,4 +1,4 @@ ## Copyright (C) 2008 Soren Hauberg +## Copyright (C) 2008 Soren Hauberg <soren@...> ## ## This program is free software; you can redistribute it and/or modify it ## under the terms of the GNU General Public License as published by Modified: trunk/octaveforge/extra/generate_html/inst/private/get_txi_files.m ===================================================================  trunk/octaveforge/extra/generate_html/inst/private/get_txi_files.m 20120331 21:44:54 UTC (rev 10119) +++ trunk/octaveforge/extra/generate_html/inst/private/get_txi_files.m 20120331 21:56:22 UTC (rev 10120) @@ 1,4 +1,4 @@ ## Copyright (C) 2008 Soren Hauberg +## Copyright (C) 2008 Soren Hauberg <soren@...> ## ## This program is free software; you can redistribute it and/or modify it ## under the terms of the GNU General Public License as published by Modified: trunk/octaveforge/extra/generate_html/inst/private/mk_chapter_dir.m ===================================================================  trunk/octaveforge/extra/generate_html/inst/private/mk_chapter_dir.m 20120331 21:44:54 UTC (rev 10119) +++ trunk/octaveforge/extra/generate_html/inst/private/mk_chapter_dir.m 20120331 21:56:22 UTC (rev 10120) @@ 1,4 +1,4 @@ ## Copyright (C) 2008 Soren Hauberg +## Copyright (C) 2008 Soren Hauberg <soren@...> ## ## This program is free software; you can redistribute it and/or modify it ## under the terms of the GNU General Public License as published by Modified: trunk/octaveforge/extra/generate_html/inst/private/mk_function_dir.m ===================================================================  trunk/octaveforge/extra/generate_html/inst/private/mk_function_dir.m 20120331 21:44:54 UTC (rev 10119) +++ trunk/octaveforge/extra/generate_html/inst/private/mk_function_dir.m 20120331 21:56:22 UTC (rev 10120) @@ 1,4 +1,4 @@ ## Copyright (C) 2008 Soren Hauberg +## Copyright (C) 2008 Soren Hauberg <soren@...> ## ## This program is free software; you can redistribute it and/or modify it ## under the terms of the GNU General Public License as published by Modified: trunk/octaveforge/extra/generate_html/inst/private/mk_various_dir.m ===================================================================  trunk/octaveforge/extra/generate_html/inst/private/mk_various_dir.m 20120331 21:44:54 UTC (rev 10119) +++ trunk/octaveforge/extra/generate_html/inst/private/mk_various_dir.m 20120331 21:56:22 UTC (rev 10120) @@ 1,4 +1,4 @@ ## Copyright (C) 2009 Soren Hauberg +## Copyright (C) 2009 Soren Hauberg <soren@...> ## ## This program is free software; you can redistribute it and/or modify it ## under the terms of the GNU General Public License as published by Modified: trunk/octaveforge/extra/generate_html/inst/private/octave_forge_seealso.m ===================================================================  trunk/octaveforge/extra/generate_html/inst/private/octave_forge_seealso.m 20120331 21:44:54 UTC (rev 10119) +++ trunk/octaveforge/extra/generate_html/inst/private/octave_forge_seealso.m 20120331 21:56:22 UTC (rev 10120) @@ 1,4 +1,4 @@ ## Copyright (C) 2009 Soren Hauberg +## Copyright (C) 2009 Soren Hauberg <soren@...> ## ## This program is free software; you can redistribute it and/or modify it ## under the terms of the GNU General Public License as published by Modified: trunk/octaveforge/extra/generate_html/inst/texi2html.m ===================================================================  trunk/octaveforge/extra/generate_html/inst/texi2html.m 20120331 21:44:54 UTC (rev 10119) +++ trunk/octaveforge/extra/generate_html/inst/texi2html.m 20120331 21:56:22 UTC (rev 10120) @@ 1,4 +1,4 @@ ## Copyright (C) 2008 Soren Hauberg +## Copyright (C) 2008 Soren Hauberg <soren@...> ## ## This program is free software; you can redistribute it and/or modify it ## under the terms of the GNU General Public License as published by Modified: trunk/octaveforge/extra/generate_html/inst/txi2index.m ===================================================================  trunk/octaveforge/extra/generate_html/inst/txi2index.m 20120331 21:44:54 UTC (rev 10119) +++ trunk/octaveforge/extra/generate_html/inst/txi2index.m 20120331 21:56:22 UTC (rev 10120) @@ 1,4 +1,4 @@ ## Copyright (C) 2008 Soren Hauberg +## Copyright (C) 2008 Soren Hauberg <soren@...> ## ## This program is free software; you can redistribute it and/or modify it ## under the terms of the GNU General Public License as published by Modified: trunk/octaveforge/extra/generate_html/inst/txi2reference.m ===================================================================  trunk/octaveforge/extra/generate_html/inst/txi2reference.m 20120331 21:44:54 UTC (rev 10119) +++ trunk/octaveforge/extra/generate_html/inst/txi2reference.m 20120331 21:56:22 UTC (rev 10120) @@ 1,4 +1,4 @@ ## Copyright (C) 2008 Soren Hauberg +## Copyright (C) 2008 Soren Hauberg <soren@...> ## ## This program is free software; you can redistribute it and/or modify it ## under the terms of the GNU General Public License as published by This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. 
From: <carandraug@us...>  20120331 21:45:01

Revision: 10119 http://octave.svn.sourceforge.net/octave/?rev=10119&view=rev Author: carandraug Date: 20120331 21:44:54 +0000 (Sat, 31 Mar 2012) Log Message:  generate_html: added news file Added Paths:  trunk/octaveforge/extra/generate_html/NEWS Added: trunk/octaveforge/extra/generate_html/NEWS ===================================================================  trunk/octaveforge/extra/generate_html/NEWS (rev 0) +++ trunk/octaveforge/extra/generate_html/NEWS 20120331 21:44:54 UTC (rev 10119) @@ 0,0 +1,9 @@ +Summary of important uservisible changes for generate_html 0.1.4: + + + ** HTML pages with documentation of each function now mention the + package that the function belongs too and have a link for the + package main page. + + ** keywords on the `See also:' will be interpreted properly (rather + than just function names). This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. 
From: <carandraug@us...>  20120331 21:36:19

Revision: 10118 http://octave.svn.sourceforge.net/octave/?rev=10118&view=rev Author: carandraug Date: 20120331 21:36:13 +0000 (Sat, 31 Mar 2012) Log Message:  html_help_text: reverting changes comitted by accident in r8745 Revision Links:  http://octave.svn.sourceforge.net/octave/?rev=8745&view=rev Modified Paths:  trunk/octaveforge/extra/generate_html/inst/html_help_text.m Modified: trunk/octaveforge/extra/generate_html/inst/html_help_text.m ===================================================================  trunk/octaveforge/extra/generate_html/inst/html_help_text.m 20120330 15:59:45 UTC (rev 10117) +++ trunk/octaveforge/extra/generate_html/inst/html_help_text.m 20120331 21:36:13 UTC (rev 10118) @@ 72,7 +72,6 @@ endif ## Run makeinfo pwd [text, status] = __makeinfo__ (text, "html", seealso); if (status != 0) error ("html_help_text: couln't parse file '%s'", name); This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. 
From: <jordigh@us...>  20120330 15:59:52

Revision: 10117 http://octave.svn.sourceforge.net/octave/?rev=10117&view=rev Author: jordigh Date: 20120330 15:59:45 +0000 (Fri, 30 Mar 2012) Log Message:  Description: Make the package compile against HDF5 1.8 Author: Rafael Laboissiere <rafael@...> Modified Paths:  trunk/octaveforge/main/fixed/src/ovfixedcomplex.cc trunk/octaveforge/main/fixed/src/ovfixedcxmat.cc trunk/octaveforge/main/fixed/src/ovfixedmat.cc trunk/octaveforge/main/fixed/src/ovfixed.cc Modified: trunk/octaveforge/main/fixed/src/ovfixedcomplex.cc ===================================================================  trunk/octaveforge/main/fixed/src/ovfixedcomplex.cc 20120330 15:14:48 UTC (rev 10116) +++ trunk/octaveforge/main/fixed/src/ovfixedcomplex.cc 20120330 15:59:45 UTC (rev 10117) @@ 349,7 +349,7 @@ bool save_as_floats) { hid_t group_hid = 1;  group_hid = H5Gcreate (loc_id, name, 0); + group_hid = H5Gcreate (loc_id, name, 0, H5P_DEFAULT, H5P_DEFAULT); if (group_hid < 0 ) return false; hsize_t dims[3]; @@ 371,7 +371,8 @@ return false; }  data_hid = H5Dcreate (group_hid, "int", type_hid, space_hid, H5P_DEFAULT); + data_hid = H5Dcreate (group_hid, "int", type_hid, space_hid, H5P_DEFAULT, + H5P_DEFAULT, H5P_DEFAULT); if (data_hid < 0) { H5Sclose (space_hid); @@ 395,7 +396,8 @@ return false; }  data_hid = H5Dcreate (group_hid, "dec", type_hid, space_hid, H5P_DEFAULT); + data_hid = H5Dcreate (group_hid, "dec", type_hid, space_hid, H5P_DEFAULT, + H5P_DEFAULT, H5P_DEFAULT); if (data_hid < 0) { H5Sclose (space_hid); @@ 427,7 +429,8 @@ return false; }  data_hid = H5Dcreate (group_hid, "num", type_hid, space_hid, H5P_DEFAULT); + data_hid = H5Dcreate (group_hid, "num", type_hid, space_hid, H5P_DEFAULT, + H5P_DEFAULT, H5P_DEFAULT); if (data_hid < 0) { H5Sclose (space_hid); @@ 458,12 +461,12 @@ hid_t group_hid, data_hid, type_hid, space_id; hsize_t rank;  group_hid = H5Gopen (loc_id, name); + group_hid = H5Gopen (loc_id, name, H5P_DEFAULT); if (group_hid < 0 ) return false; hid_t complex_type = hdf5_make_fixed_complex_type (H5T_NATIVE_UCHAR, 1);  data_hid = H5Dopen (group_hid, "int"); + data_hid = H5Dopen (group_hid, "int", H5P_DEFAULT); type_hid = H5Dget_type (data_hid); if (! hdf5_types_compatible (type_hid, complex_type)) @@ 499,7 +502,7 @@ H5Tclose(type_hid); H5Dclose (data_hid);  data_hid = H5Dopen (group_hid, "dec"); + data_hid = H5Dopen (group_hid, "dec", H5P_DEFAULT); type_hid = H5Dget_type (data_hid); if (! hdf5_types_compatible (type_hid, complex_type)) @@ 539,7 +542,7 @@ complex_type = hdf5_make_fixed_complex_type (H5T_NATIVE_UINT, sizeof(unsigned int));  data_hid = H5Dopen (group_hid, "num"); + data_hid = H5Dopen (group_hid, "num", H5P_DEFAULT); type_hid = H5Dget_type (data_hid); if (! hdf5_types_compatible (type_hid, complex_type)) Modified: trunk/octaveforge/main/fixed/src/ovfixedcxmat.cc ===================================================================  trunk/octaveforge/main/fixed/src/ovfixedcxmat.cc 20120330 15:14:48 UTC (rev 10116) +++ trunk/octaveforge/main/fixed/src/ovfixedcxmat.cc 20120330 15:59:45 UTC (rev 10117) @@ 616,7 +616,7 @@ bool save_as_floats) { hid_t group_hid = 1;  group_hid = H5Gcreate (loc_id, name, 0); + group_hid = H5Gcreate (loc_id, name, 0, H5P_DEFAULT, H5P_DEFAULT); if (group_hid < 0 ) return false; dim_vector d = dims (); @@ 644,7 +644,8 @@ return false; }  data_hid = H5Dcreate (group_hid, "int", type_hid, space_hid, H5P_DEFAULT); + data_hid = H5Dcreate (group_hid, "int", type_hid, space_hid, H5P_DEFAULT, + H5P_DEFAULT, H5P_DEFAULT); if (data_hid < 0) { H5Sclose (space_hid); @@ 671,7 +672,8 @@ return false; }  data_hid = H5Dcreate (group_hid, "dec", type_hid, space_hid, H5P_DEFAULT); + data_hid = H5Dcreate (group_hid, "dec", type_hid, space_hid, H5P_DEFAULT, + H5P_DEFAULT, H5P_DEFAULT); if (data_hid < 0) { H5Sclose (space_hid); @@ 707,7 +709,8 @@ return false; }  data_hid = H5Dcreate (group_hid, "num", type_hid, space_hid, H5P_DEFAULT); + data_hid = H5Dcreate (group_hid, "num", type_hid, space_hid, H5P_DEFAULT, + H5P_DEFAULT, H5P_DEFAULT); if (data_hid < 0) { H5Sclose (space_hid); @@ 740,13 +743,13 @@ hid_t group_hid, data_hid, space_id, type_hid; hsize_t rank, rank_old;  group_hid = H5Gopen (loc_id, name); + group_hid = H5Gopen (loc_id, name, H5P_DEFAULT); if (group_hid < 0 ) return false; hid_t complex_type = hdf5_make_fixed_complex_type (H5T_NATIVE_UINT, sizeof(unsigned int));  data_hid = H5Dopen (group_hid, "int"); + data_hid = H5Dopen (group_hid, "int", H5P_DEFAULT); type_hid = H5Dget_type (data_hid); if (! hdf5_types_compatible (type_hid, complex_type)) @@ 810,7 +813,7 @@ H5Tclose(type_hid); H5Dclose (data_hid);  data_hid = H5Dopen (group_hid, "dec"); + data_hid = H5Dopen (group_hid, "dec", H5P_DEFAULT); type_hid = H5Dget_type (data_hid); if (! hdf5_types_compatible (type_hid, complex_type)) @@ 875,7 +878,7 @@ H5Tclose(type_hid); H5Dclose (data_hid);  data_hid = H5Dopen (group_hid, "num"); + data_hid = H5Dopen (group_hid, "num", H5P_DEFAULT); type_hid = H5Dget_type (data_hid); if (! hdf5_types_compatible (type_hid, complex_type)) Modified: trunk/octaveforge/main/fixed/src/ovfixedmat.cc ===================================================================  trunk/octaveforge/main/fixed/src/ovfixedmat.cc 20120330 15:14:48 UTC (rev 10116) +++ trunk/octaveforge/main/fixed/src/ovfixedmat.cc 20120330 15:59:45 UTC (rev 10117) @@ 574,7 +574,7 @@ octave_fixed_matrix::save_hdf5 (hid_t loc_id, const char *name, bool save_as_floats) { hid_t group_hid = 1;  group_hid = H5Gcreate (loc_id, name, 0); + group_hid = H5Gcreate (loc_id, name, 0, H5P_DEFAULT, H5P_DEFAULT); if (group_hid < 0 ) return false; dim_vector d = dims (); @@ 595,7 +595,7 @@ } data_hid = H5Dcreate (group_hid, "int", H5T_NATIVE_UCHAR, space_hid,  H5P_DEFAULT); + H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); if (data_hid < 0) { H5Sclose (space_hid); @@ 618,7 +618,7 @@ } data_hid = H5Dcreate (group_hid, "dec", H5T_NATIVE_UCHAR, space_hid,  H5P_DEFAULT); + H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); if (data_hid < 0) { H5Sclose (space_hid); @@ 640,7 +640,7 @@ } data_hid = H5Dcreate (group_hid, "num", H5T_NATIVE_UINT, space_hid,  H5P_DEFAULT); + H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); if (data_hid < 0) { H5Sclose (space_hid); @@ 668,10 +668,10 @@ hid_t group_hid, data_hid, space_id; hsize_t rank, rank_old;  group_hid = H5Gopen (loc_id, name); + group_hid = H5Gopen (loc_id, name, H5P_DEFAULT); if (group_hid < 0 ) return false;  data_hid = H5Dopen (group_hid, "int"); + data_hid = H5Dopen (group_hid, "int", H5P_DEFAULT); space_id = H5Dget_space (data_hid); rank = H5Sget_simple_extent_ndims (space_id); rank_old = rank; @@ 719,7 +719,7 @@ } H5Dclose (data_hid);  data_hid = H5Dopen (group_hid, "dec"); + data_hid = H5Dopen (group_hid, "dec", H5P_DEFAULT); space_id = H5Dget_space (data_hid); rank = H5Sget_simple_extent_ndims (space_id); @@ 766,7 +766,7 @@ } H5Dclose (data_hid);  data_hid = H5Dopen (group_hid, "num"); + data_hid = H5Dopen (group_hid, "num", H5P_DEFAULT); space_id = H5Dget_space (data_hid); rank = H5Sget_simple_extent_ndims (space_id); Modified: trunk/octaveforge/main/fixed/src/ovfixed.cc ===================================================================  trunk/octaveforge/main/fixed/src/ovfixed.cc 20120330 15:14:48 UTC (rev 10116) +++ trunk/octaveforge/main/fixed/src/ovfixed.cc 20120330 15:59:45 UTC (rev 10117) @@ 291,7 +291,7 @@ octave_fixed::save_hdf5 (hid_t loc_id, const char *name, bool save_as_floats) { hid_t group_hid = 1;  group_hid = H5Gcreate (loc_id, name, 0); + group_hid = H5Gcreate (loc_id, name, 0, H5P_DEFAULT, H5P_DEFAULT); if (group_hid < 0 ) return false; hsize_t dims[3]; @@ 308,7 +308,7 @@ } data_hid = H5Dcreate (group_hid, "int", H5T_NATIVE_UCHAR, space_hid,  H5P_DEFAULT); + H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); if (data_hid < 0) { H5Sclose (space_hid); @@ 328,7 +328,7 @@ } data_hid = H5Dcreate (group_hid, "dec", H5T_NATIVE_UCHAR, space_hid,  H5P_DEFAULT); + H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); if (data_hid < 0) { H5Sclose (space_hid); @@ 348,7 +348,7 @@ } data_hid = H5Dcreate (group_hid, "num", H5T_NATIVE_UINT, space_hid,  H5P_DEFAULT); + H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); if (data_hid < 0) { H5Sclose (space_hid); @@ 374,10 +374,10 @@ hid_t group_hid, data_hid, space_id; hsize_t rank;  group_hid = H5Gopen (loc_id, name); + group_hid = H5Gopen (loc_id, name, H5P_DEFAULT); if (group_hid < 0 ) return false;  data_hid = H5Dopen (group_hid, "int"); + data_hid = H5Dopen (group_hid, "int", H5P_DEFAULT); space_id = H5Dget_space (data_hid); rank = H5Sget_simple_extent_ndims (space_id); @@ 398,7 +398,7 @@ H5Dclose (data_hid);  data_hid = H5Dopen (group_hid, "dec"); + data_hid = H5Dopen (group_hid, "dec", H5P_DEFAULT); space_id = H5Dget_space (data_hid); rank = H5Sget_simple_extent_ndims (space_id); @@ 418,7 +418,7 @@ } H5Dclose (data_hid);  data_hid = H5Dopen (group_hid, "num"); + data_hid = H5Dopen (group_hid, "num", H5P_DEFAULT); space_id = H5Dget_space (data_hid); rank = H5Sget_simple_extent_ndims (space_id); This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. 
From: <carandraug@us...>  20120330 15:15:02

Revision: 10116 http://octave.svn.sourceforge.net/octave/?rev=10116&view=rev Author: carandraug Date: 20120330 15:14:48 +0000 (Fri, 30 Mar 2012) Log Message:  optim: upgrade license to GPLv3+ and mention on DESCRIPTION the other package licenses Modified Paths:  trunk/octaveforge/main/optim/COPYING trunk/octaveforge/main/optim/DESCRIPTION trunk/octaveforge/main/optim/inst/LinearRegression.m trunk/octaveforge/main/optim/inst/__bracket_min.m trunk/octaveforge/main/optim/inst/__poly_2_extrema.m trunk/octaveforge/main/optim/inst/__semi_bracket.m trunk/octaveforge/main/optim/inst/adsmax.m trunk/octaveforge/main/optim/inst/battery.m trunk/octaveforge/main/optim/inst/bfgsmin.m trunk/octaveforge/main/optim/inst/bfgsmin_example.m trunk/octaveforge/main/optim/inst/brent_line_min.m trunk/octaveforge/main/optim/inst/cdiff.m trunk/octaveforge/main/optim/inst/cg_min.m trunk/octaveforge/main/optim/inst/cpiv_bard.m trunk/octaveforge/main/optim/inst/curvefit_stat.m trunk/octaveforge/main/optim/inst/d2_min.m trunk/octaveforge/main/optim/inst/dcdp.m trunk/octaveforge/main/optim/inst/de_min.m trunk/octaveforge/main/optim/inst/deriv.m trunk/octaveforge/main/optim/inst/dfdp.m trunk/octaveforge/main/optim/inst/dfpdp.m trunk/octaveforge/main/optim/inst/dfxpdp.m trunk/octaveforge/main/optim/inst/expfit.m trunk/octaveforge/main/optim/inst/fmin.m trunk/octaveforge/main/optim/inst/fmins.m trunk/octaveforge/main/optim/inst/fminsearch.m trunk/octaveforge/main/optim/inst/fminunc_compat.m trunk/octaveforge/main/optim/inst/gjp.m trunk/octaveforge/main/optim/inst/jacobs.m trunk/octaveforge/main/optim/inst/leasqr.m trunk/octaveforge/main/optim/inst/line_min.m trunk/octaveforge/main/optim/inst/linprog.m trunk/octaveforge/main/optim/inst/mdsmax.m trunk/octaveforge/main/optim/inst/minimize.m trunk/octaveforge/main/optim/inst/nelder_mead_min.m trunk/octaveforge/main/optim/inst/nmsmax.m trunk/octaveforge/main/optim/inst/nonlin_curvefit.m trunk/octaveforge/main/optim/inst/nonlin_residmin.m trunk/octaveforge/main/optim/inst/nrm.m trunk/octaveforge/main/optim/inst/optim_problems.m trunk/octaveforge/main/optim/inst/optimset_compat.m trunk/octaveforge/main/optim/inst/polyconf.m trunk/octaveforge/main/optim/inst/polyfitinf.m trunk/octaveforge/main/optim/inst/powell.m trunk/octaveforge/main/optim/inst/private/__dfdp__.m trunk/octaveforge/main/optim/inst/private/__lm_svd__.m trunk/octaveforge/main/optim/inst/residmin_stat.m trunk/octaveforge/main/optim/inst/rosenbrock.m trunk/octaveforge/main/optim/inst/samin_example.m trunk/octaveforge/main/optim/inst/test_d2_min_1.m trunk/octaveforge/main/optim/inst/test_d2_min_2.m trunk/octaveforge/main/optim/inst/test_d2_min_3.m trunk/octaveforge/main/optim/inst/test_fminunc_1.m trunk/octaveforge/main/optim/inst/test_min_1.m trunk/octaveforge/main/optim/inst/test_min_2.m trunk/octaveforge/main/optim/inst/test_min_3.m trunk/octaveforge/main/optim/inst/test_min_4.m trunk/octaveforge/main/optim/inst/test_minimize_1.m trunk/octaveforge/main/optim/inst/test_nelder_mead_min_1.m trunk/octaveforge/main/optim/inst/test_nelder_mead_min_2.m trunk/octaveforge/main/optim/inst/test_wpolyfit.m trunk/octaveforge/main/optim/inst/vfzero.m trunk/octaveforge/main/optim/inst/wpolyfit.m trunk/octaveforge/main/optim/inst/wrap_f_dfdp.m trunk/octaveforge/main/optim/inst/wsolve.m trunk/octaveforge/main/optim/src/__bfgsmin.cc trunk/octaveforge/main/optim/src/__disna_optim__.cc trunk/octaveforge/main/optim/src/numgradient.cc trunk/octaveforge/main/optim/src/numhessian.cc trunk/octaveforge/main/optim/src/samin.cc Modified: trunk/octaveforge/main/optim/COPYING ===================================================================  trunk/octaveforge/main/optim/COPYING 20120330 15:02:12 UTC (rev 10115) +++ trunk/octaveforge/main/optim/COPYING 20120330 15:14:48 UTC (rev 10116) @@ 1,337 +1 @@  GNU GENERAL PUBLIC LICENSE  Version 2, June 1991   Copyright (C) 1989, 1991 Free Software Foundation, Inc. <http://fsf.org/>;  Everyone is permitted to copy and distribute verbatim copies  of this license document, but changing it is not allowed.   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It is safest to attach them to the start of each source file to most effectively convey the exclusion of warranty; and each file should have at least the "copyright" line and a pointer to where the full notice is found.   <one line to give the program's name and a brief idea of what it does.>  Copyright (C) <year> <name of author>   This program is free software; you can redistribute it and/or modify  it under the terms of the GNU General Public License as published by  the Free Software Foundation; either version 2 of the License, or  (at your option) any later version.   This program is distributed in the hope that it will be useful,  but WITHOUT ANY WARRANTY; without even the implied warranty of  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the  GNU General Public License for more details.   You should have received a copy of the GNU General Public License  along with this program; if not, see <http://www.gnu.org/licenses/>;.  Also add information on how to contact you by electronic and paper mail.  If the program is interactive, make it output a short notice like this when it starts in an interactive mode:   Gnomovision version 69, Copyright (C) year name of author  Gnomovision comes with ABSOLUTELY NO WARRANTY; for details type `show w'.  This is free software, and you are welcome to redistribute it  under certain conditions; type `show c' for details.  The hypothetical commands `show w' and `show c' should show the appropriate parts of the General Public License. Of course, the commands you use may be called something other than `show w' and `show c'; they could even be mouseclicks or menu itemswhatever suits your program.  You should also get your employer (if you work as a programmer) or your school, if any, to sign a "copyright disclaimer" for the program, if necessary. Here is a sample; alter the names:   Yoyodyne, Inc., hereby disclaims all copyright interest in the program  `Gnomovision' (which makes passes at compilers) written by James Hacker.   <signature of Ty Coon>, 1 April 1989  Ty Coon, President of Vice  This General Public License does not permit incorporating your program into proprietary programs. If your program is a subroutine library, you may consider it more useful to permit linking proprietary applications with the library. If this is what you want to do, use the GNU Library General Public License instead of this License. +See individual files for licenses Modified: trunk/octaveforge/main/optim/DESCRIPTION ===================================================================  trunk/octaveforge/main/optim/DESCRIPTION 20120330 15:02:12 UTC (rev 10115) +++ trunk/octaveforge/main/optim/DESCRIPTION 20120330 15:14:48 UTC (rev 10116) @@ 7,5 +7,5 @@ Description: Nonlinear optimization toolkit. Depends: octave (>= 2.9.7), miscellaneous (>= 1.0.10), struct (>= 1.0.9) Autoload: no License: GPL version 2 or later and GFDL +License: GFDL, GPLv3+, modified BSD, public domain Url: http://octave.sf.net Modified: trunk/octaveforge/main/optim/inst/LinearRegression.m ===================================================================  trunk/octaveforge/main/optim/inst/LinearRegression.m 20120330 15:02:12 UTC (rev 10115) +++ trunk/octaveforge/main/optim/inst/LinearRegression.m 20120330 15:14:48 UTC (rev 10116) @@ 1,42 +1,41 @@ function [p,y_var,r,p_var]=LinearRegression(F,y,weight) +## Copyright (C) 2007 Andreas Stahel <Andreas.Stahel@...> +## +## This program is free software; you can redistribute it and/or modify it under +## the terms of the GNU General Public License as published by the Free Software +## Foundation; either version 3 of the License, or (at your option) any later +## version. +## +## This program is distributed in the hope that it will be useful, but WITHOUT +## ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or +## FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more +## details. +## +## You should have received a copy of the GNU General Public License along with +## this program; if not, see <http://www.gnu.org/licenses/>;. % general linear regression % % [p,y_var,r,p_var]=LinearRegression(F,y) % [p,y_var,r,p_var]=LinearRegression(F,y,weight) % % determine the parameters p_j (j=1,2,...,m) such that the function % f(x) = sum_(i=1,...,m) p_j*f_j(x) fits as good as possible to the % given values y_i = f(x_i) % % parameters % F n*m matrix with the values of the basis functions at the support points % in column j give the values of f_j at the points x_i (i=1,2,...,n) % y n column vector of given values % weight n column vector of given weights % % return values % p m vector with the estimated values of the parameters % y_var estimated variance of the error % r weighted norm of residual % p_var estimated variance of the parameters p_j   ## Copyright (C) 2007 Andreas Stahel <Andreas.Stahel@...> +## general linear regression ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 2 of the License, or ## (at your option) any later version. +## [p,y_var,r,p_var]=LinearRegression(F,y) +## [p,y_var,r,p_var]=LinearRegression(F,y,weight) ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. +## determine the parameters p_j (j=1,2,...,m) such that the function +## f(x) = sum_(i=1,...,m) p_j*f_j(x) fits as good as possible to the +## given values y_i = f(x_i) ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see <http://www.gnu.org/licenses/>;. +## parameters +## F n*m matrix with the values of the basis functions at the support points +## in column j give the values of f_j at the points x_i (i=1,2,...,n) +## y n column vector of given values +## weight n column vector of given weights +## +## return values +## p m vector with the estimated values of the parameters +## y_var estimated variance of the error +## r weighted norm of residual +## p_var estimated variance of the parameters p_j +function [p,y_var,r,p_var]=LinearRegression(F,y,weight) + if (nargin < 2  nargin >= 4) usage('wrong number of arguments in [p,y_var,r,p_var]=LinearRegression(F,y)'); end Modified: trunk/octaveforge/main/optim/inst/__bracket_min.m ===================================================================  trunk/octaveforge/main/optim/inst/__bracket_min.m 20120330 15:02:12 UTC (rev 10115) +++ trunk/octaveforge/main/optim/inst/__bracket_min.m 20120330 15:14:48 UTC (rev 10116) @@ 1,3 +1,19 @@ +## Copyright (C) 2002 Etienne Grossmann <etienne@...> +## Copyright (C) 2009 Levente Torok <TorokLev@...> +## +## This program is free software; you can redistribute it and/or modify it under +## the terms of the GNU General Public License as published by the Free Software +## Foundation; either version 3 of the License, or (at your option) any later +## version. +## +## This program is distributed in the hope that it will be useful, but WITHOUT +## ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or +## FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more +## details. +## +## You should have received a copy of the GNU General Public License along with +## this program; if not, see <http://www.gnu.org/licenses/>;. + ## [a, b, ga, gb, nev] = semi_bracket (f, dx, a, narg, args) ## ## Find an interval containing a local minimum of the function @@ 6,10 +22,6 @@ ## a < b. ## nev is the number of function evaluations ## Author : Etienne Grossmann <etienne@...> ## Modified by: Levente Torok <TorokLev@...> ## This software is distributed under the terms of the GPL  function [a, b, ga, gb, n] = __bracket_min (f, dx, narg, args) [a,b, ga,gb, n] = __semi_bracket (f, dx, 0, narg, args); Modified: trunk/octaveforge/main/optim/inst/__poly_2_extrema.m ===================================================================  trunk/octaveforge/main/optim/inst/__poly_2_extrema.m 20120330 15:02:12 UTC (rev 10115) +++ trunk/octaveforge/main/optim/inst/__poly_2_extrema.m 20120330 15:14:48 UTC (rev 10116) @@ 1,3 +1,19 @@ +## Copyright (C) 2002 Etienne Grossmann <etienne@...> +## Copyright (C) 2009 Levente Torok <TorokLev@...> +## +## This program is free software; you can redistribute it and/or modify it under +## the terms of the GNU General Public License as published by the Free Software +## Foundation; either version 3 of the License, or (at your option) any later +## version. +## +## This program is distributed in the hope that it will be useful, but WITHOUT +## ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or +## FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more +## details. +## +## You should have received a copy of the GNU General Public License along with +## this program; if not, see <http://www.gnu.org/licenses/>;. + ## ex = poly_2_ex (l, f)  Extremum of a 1var deg2 polynomial ## ## l : 3 : variable values @@ 7,10 +23,9 @@ ## ## Assuming that f(i) = a*l(i)^2 + b* l(i) + c = P(l(i)) for some a, b, c, ## ex is the extremum of the polynome P. ## + function ex = __poly_2_extrema (l, f)  ### This somewhat helps if solution is very close to one of the points. [f,i] = sort (f); l = l(i); @@ 36,4 +51,4 @@ # ex  ex0 # end ex = l(1) + ex; end \ No newline at end of file +end Modified: trunk/octaveforge/main/optim/inst/__semi_bracket.m ===================================================================  trunk/octaveforge/main/optim/inst/__semi_bracket.m 20120330 15:02:12 UTC (rev 10115) +++ trunk/octaveforge/main/optim/inst/__semi_bracket.m 20120330 15:14:48 UTC (rev 10116) @@ 1,3 +1,19 @@ +## Copyright (C) 2002 Etienne Grossmann <etienne@...> +## Copyright (C) 2009 Levente Torok <TorokLev@...> +## +## This program is free software; you can redistribute it and/or modify it under +## the terms of the GNU General Public License as published by the Free Software +## Foundation; either version 3 of the License, or (at your option) any later +## version. +## +## This program is distributed in the hope that it will be useful, but WITHOUT +## ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or +## FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more +## details. +## +## You should have received a copy of the GNU General Public License along with +## this program; if not, see <http://www.gnu.org/licenses/>;. + ## [a, b, ga, gb, nev] = semi_bracket (f, dx, a, narg, args) ## ## Find an interval containing a local minimum of the function @@ 7,10 +23,6 @@ ## a < b. ## nev is the number of function evaluations. ## Author : Etienne Grossmann <etienne@...> ## Modified by: Levente Torok <TorokLev@...> ## This software is distributed under the terms of the GPL  function [a,b,ga,gb,n] = __semi_bracket (f, dx, a, narg, args) step = 1; Modified: trunk/octaveforge/main/optim/inst/adsmax.m ===================================================================  trunk/octaveforge/main/optim/inst/adsmax.m 20120330 15:02:12 UTC (rev 10115) +++ trunk/octaveforge/main/optim/inst/adsmax.m 20120330 15:14:48 UTC (rev 10116) @@ 1,44 +1,57 @@ function [x, fmax, nf] = adsmax(f, x, stopit, savit, P, varargin) %ADSMAX Alternating directions method for direct search optimization. % [x, fmax, nf] = ADSMAX(FUN, x0, STOPIT, SAVIT, P) attempts to % maximize the function FUN, using the starting vector x0. % The alternating directions direct search method is used. % Output arguments: % x = vector yielding largest function value found, % fmax = function value at x, % nf = number of function evaluations. % The iteration is terminated when either %  the relative increase in function value between successive % iterations is <= STOPIT(1) (default 1e3), %  STOPIT(2) function evaluations have been performed % (default inf, i.e., no limit), or %  a function value equals or exceeds STOPIT(3) % (default inf, i.e., no test on function values). % Progress of the iteration is not shown if STOPIT(5) = 0 (default 1). % If a nonempty fourth parameter string SAVIT is present, then % `SAVE SAVIT x fmax nf' is executed after each inner iteration. % By default, the search directions are the coordinate directions. % The columns of a fifth parameter matrix P specify alternative search % directions (P = EYE is the default). % NB: x0 can be a matrix. In the output argument, in SAVIT saves, % and in function calls, x has the same shape as x0. % ADSMAX(fun, x0, STOPIT, SAVIT, P, P1, P2,...) allows additional % arguments to be passed to fun, via feval(fun,x,P1,P2,...). +%% Copyright (C) 2002 N.J.Higham +%% Copyright (C) 2003 Andy Adler <adler@...> +%% +%% This program is free software; you can redistribute it and/or modify it under +%% the terms of the GNU General Public License as published by the Free Software +%% Foundation; either version 3 of the License, or (at your option) any later +%% version. +%% +%% This program is distributed in the hope that it will be useful, but WITHOUT +%% ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or +%% FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more +%% details. +%% +%% You should have received a copy of the GNU General Public License along with +%% this program; if not, see <http://www.gnu.org/licenses/>;. +%%ADSMAX Alternating directions method for direct search optimization. +%% [x, fmax, nf] = ADSMAX(FUN, x0, STOPIT, SAVIT, P) attempts to +%% maximize the function FUN, using the starting vector x0. +%% The alternating directions direct search method is used. +%% Output arguments: +%% x = vector yielding largest function value found, +%% fmax = function value at x, +%% nf = number of function evaluations. +%% The iteration is terminated when either +%%  the relative increase in function value between successive +%% iterations is <= STOPIT(1) (default 1e3), +%%  STOPIT(2) function evaluations have been performed +%% (default inf, i.e., no limit), or +%%  a function value equals or exceeds STOPIT(3) +%% (default inf, i.e., no test on function values). +%% Progress of the iteration is not shown if STOPIT(5) = 0 (default 1). +%% If a nonempty fourth parameter string SAVIT is present, then +%% `SAVE SAVIT x fmax nf' is executed after each inner iteration. +%% By default, the search directions are the coordinate directions. +%% The columns of a fifth parameter matrix P specify alternative search +%% directions (P = EYE is the default). +%% NB: x0 can be a matrix. In the output argument, in SAVIT saves, +%% and in function calls, x has the same shape as x0. +%% ADSMAX(fun, x0, STOPIT, SAVIT, P, P1, P2,...) allows additional +%% arguments to be passed to fun, via feval(fun,x,P1,P2,...). +%% Reference: +%% N. J. Higham, Optimization by direct search in matrix computations, +%% SIAM J. Matrix Anal. Appl, 14(2): 317333, 1993. +%% N. J. Higham, Accuracy and Stability of Numerical Algorithms, +%% Second edition, Society for Industrial and Applied Mathematics, +%% Philadelphia, PA, 2002; sec. 20.5. + % From Matrix Toolbox % Copyright (C) 2002 N.J.Higham % http://www.maths.man.ac.uk/~higham/mctoolbox % distributed under the terms of the GNU General Public License % % Modifications for octave by A.Adler 2003 % $Id$ % Reference: % N. J. Higham, Optimization by direct search in matrix computations, % SIAM J. Matrix Anal. Appl, 14(2): 317333, 1993. % N. J. Higham, Accuracy and Stability of Numerical Algorithms, % Second edition, Society for Industrial and Applied Mathematics, % Philadelphia, PA, 2002; sec. 20.5. +function [x, fmax, nf] = adsmax(f, x, stopit, savit, P, varargin) x0 = x(:); % Work with column vector internally. n = length(x0); Modified: trunk/octaveforge/main/optim/inst/battery.m ===================================================================  trunk/octaveforge/main/optim/inst/battery.m 20120330 15:02:12 UTC (rev 10115) +++ trunk/octaveforge/main/optim/inst/battery.m 20120330 15:14:48 UTC (rev 10116) @@ 1,33 +1,32 @@ # Copyright (C) 2004 Michael Creel <michael.creel@...> # # This program is free software; you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # the Free Software Foundation; either version 2 of the License, or # (at your option) any later version. # # This program is distributed in the hope that it will be useful, # but WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the # GNU General Public License for more details. # # You should have received a copy of the GNU General Public License # along with this program; If not, see <http://www.gnu.org/licenses/>;. # (c) Michael Creel <michael.creel@...> +## Copyright (C) 2004 Michael Creel <michael.creel@...> +## +## This program is free software; you can redistribute it and/or modify it under +## the terms of the GNU General Public License as published by the Free Software +## Foundation; either version 3 of the License, or (at your option) any later +## version. +## +## This program is distributed in the hope that it will be useful, but WITHOUT +## ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or +## FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more +## details. +## +## You should have received a copy of the GNU General Public License along with +## this program; if not, see <http://www.gnu.org/licenses/>;. # battery.m: repeatedly call bfgs using a battery of # start values, to attempt to find global min # of a nonconvex function  # INPUTS: # func: function to mimimize # args: args of function # minarg: argument to minimize w.r.t. (usually = 1) # startvals: kxp matrix of values to try for sure (don't include all zeros, that's automatic) # max iters per start value # number of additional random start values to try  +## battery.m: repeatedly call bfgs using a battery of +## start values, to attempt to find global min +## of a nonconvex function +## +## INPUTS: +## func: function to mimimize +## args: args of function +## minarg: argument to minimize w.r.t. (usually = 1) +## startvals: kxp matrix of values to try for sure (don't include all zeros, that's automatic) +## max iters per start value +## number of additional random start values to try +## # OUTPUT: theta  the best value found  NOT iterated to convergence  + function theta = battery(func, args, minarg, startvals, maxiters) # setup Modified: trunk/octaveforge/main/optim/inst/bfgsmin.m ===================================================================  trunk/octaveforge/main/optim/inst/bfgsmin.m 20120330 15:02:12 UTC (rev 10115) +++ trunk/octaveforge/main/optim/inst/bfgsmin.m 20120330 15:14:48 UTC (rev 10116) @@ 1,18 +1,17 @@ ## Copyright (C) 2006 Michael Creel <michael.creel@...> +## Copyright (C) 2006 Michael Creel <michael.creel@...> ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 2 of the License, or ## (at your option) any later version. +## This program is free software; you can redistribute it and/or modify it under +## the terms of the GNU General Public License as published by the Free Software +## Foundation; either version 3 of the License, or (at your option) any later +## version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. +## This program is distributed in the hope that it will be useful, but WITHOUT +## ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or +## FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more +## details. ## ## You should have received a copy of the GNU General Public License ## along with this program; if not, write to the Free Software ## Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 021101301 USA +## You should have received a copy of the GNU General Public License along with +## this program; if not, see <http://www.gnu.org/licenses/>;. ## bfgsmin: bfgs or limited memory bfgs minimization of function ## Modified: trunk/octaveforge/main/optim/inst/bfgsmin_example.m ===================================================================  trunk/octaveforge/main/optim/inst/bfgsmin_example.m 20120330 15:02:12 UTC (rev 10115) +++ trunk/octaveforge/main/optim/inst/bfgsmin_example.m 20120330 15:14:48 UTC (rev 10116) @@ 1,18 +1,17 @@ # Copyright (C) 2004,2005,2006 Michael Creel <michael.creel@...> # # This program is free software; you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by # the Free Software Foundation; either version 2 of the License, or # (at your option) any later version. # # This program is distributed in the hope that it will be useful, # but WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the # GNU General Public License for more details. # # You should have received a copy of the GNU General Public License # along with this program; if not, write to the Free Software # Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 021101301 USA +## Copyright (C) 2004,2005,2006 Michael Creel <michael.creel@...> +## +## This program is free software; you can redistribute it and/or modify it under +## the terms of the GNU General Public License as published by the Free Software +## Foundation; either version 3 of the License, or (at your option) any later +## version. +## +## This program is distributed in the hope that it will be useful, but WITHOUT +## ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or +## FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more +## details. +## +## You should have received a copy of the GNU General Public License along with +## this program; if not, see <http://www.gnu.org/licenses/>;. # usage: bfgsmin_example (to run) or edit bfgsmin_example (to examine) ## Modified: trunk/octaveforge/main/optim/inst/brent_line_min.m ===================================================================  trunk/octaveforge/main/optim/inst/brent_line_min.m 20120330 15:02:12 UTC (rev 10115) +++ trunk/octaveforge/main/optim/inst/brent_line_min.m 20120330 15:14:48 UTC (rev 10116) @@ 1,3 +1,18 @@ +## Copyright (C) 2009 Levente Torok <TorokLev@...> +## +## This program is free software; you can redistribute it and/or modify it under +## the terms of the GNU General Public License as published by the Free Software +## Foundation; either version 3 of the License, or (at your option) any later +## version. +## +## This program is distributed in the hope that it will be useful, but WITHOUT +## ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or +## FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more +## details. +## +## You should have received a copy of the GNU General Public License along with +## this program; if not, see <http://www.gnu.org/licenses/>;. + ## * texinfo * ## @deftypefn {Function File} {[@var{s},@var{v},@var{n}]} brent_line_min ( @var{f},@var{df},@var{args},@var{ctl} ) ## Line minimization of f along df @@ 32,7 +47,6 @@ ## given. ## @end deftypefn  function [s,gs,nev] = brent_line_min( f,dx,args,ctl ) verbose = 0; Modified: trunk/octaveforge/main/optim/inst/cdiff.m ===================================================================  trunk/octaveforge/main/optim/inst/cdiff.m 20120330 15:02:12 UTC (rev 10115) +++ trunk/octaveforge/main/optim/inst/cdiff.m 20120330 15:14:48 UTC (rev 10116) @@ 1,14 +1,17 @@ ## Copyright (C) 2002 Etienne Grossmann. All rights reserved. +## Copyright (C) 2002 Etienne Grossmann <etienne@...> ## ## This program is free software; you can redistribute it and/or modify it ## under the terms of the GNU General Public License as published by the ## Free Software Foundation; either version 2, or (at your option) any ## later version. +## This program is free software; you can redistribute it and/or modify it under +## the terms of the GNU General Public License as published by the Free Software +## Foundation; either version 3 of the License, or (at your option) any later +## version. ## ## This is distributed in the hope that it will be useful, but WITHOUT +## This program is distributed in the hope that it will be useful, but WITHOUT ## ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or ## FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License ## for more details. +## FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more +## details. +## +## You should have received a copy of the GNU General Public License along with +## this program; if not, see <http://www.gnu.org/licenses/>;. ## c = cdiff (func,wrt,N,dfunc,stack,dx)  Code for num. differentiation ## = "function df = dfunc (var1,..,dvar,..,varN) .. endfunction @@ 42,7 +45,7 @@ ## Default:10*sqrt(eps) ## ## See also : ndiff, eval, todisk ## + function c = cdiff (func,wrt,nargs,dfunc,stack,dx) if nargin<2, Modified: trunk/octaveforge/main/optim/inst/cg_min.m ===================================================================  trunk/octaveforge/main/optim/inst/cg_min.m 20120330 15:02:12 UTC (rev 10115) +++ trunk/octaveforge/main/optim/inst/cg_min.m 20120330 15:14:48 UTC (rev 10116) @@ 1,3 +1,19 @@ +## Copyright (C) 2002 Etienne Grossmann <etienne@...> +## Copyright (C) 2009 Levente Torok <TorokLev@...> +## +## This program is free software; you can redistribute it and/or modify it under +## the terms of the GNU General Public License as published by the Free Software +## Foundation; either version 3 of the License, or (at your option) any later +## version. +## +## This program is distributed in the hope that it will be useful, but WITHOUT +## ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or +## FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more +## details. +## +## You should have received a copy of the GNU General Public License along with +## this program; if not, see <http://www.gnu.org/licenses/>;. + ## * texinfo * ## @deftypefn {Function File} {[@var{x0},@var{v},@var{nev}]} cg_min ( @var{f},@var{df},@var{args},@var{ctl} ) ## NonLinear Conjugate Gradient method to minimize function @var{f}. @@ 54,10 +70,6 @@ ## @seealso{ bfgsmin, http://en.wikipedia.org/wiki/Nonlinear_conjugate_gradient } ## @end deftypefn ## Author : Etienne Grossmann <etienne@...> ## Modified by: Levente Torok <TorokLev@...> ## This software is distributed under the terms of the GPL  function [x,v,nev] = cg_min (f, dfn, args, ctl) verbose = 0; Modified: trunk/octaveforge/main/optim/inst/cpiv_bard.m ===================================================================  trunk/octaveforge/main/optim/inst/cpiv_bard.m 20120330 15:02:12 UTC (rev 10115) +++ trunk/octaveforge/main/optim/inst/cpiv_bard.m 20120330 15:14:48 UTC (rev 10116) @@ 1,42 +1,41 @@ %% Copyright (C) 2010, 2011 Olaf Till +%% Copyright (C) 2010, 2011 Olaf Till <olaf.till@...> %% %% This program is free software; you can redistribute it and/or modify %% it under the terms of the GNU General Public License as published by %% the Free Software Foundation; either version 2 of the License, or (at %% your option) any later version. +%% This program is free software; you can redistribute it and/or modify it under +%% the terms of the GNU General Public License as published by the Free Software +%% Foundation; either version 3 of the License, or (at your option) any later +%% version. %% %% This program is distributed in the hope that it will be useful, but %% WITHOUT ANY WARRANTY; without even the implied warranty of %% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU %% General Public License for more details. +%% This program is distributed in the hope that it will be useful, but WITHOUT +%% ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or +%% FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more +%% details. %% %% You should have received a copy of the GNU General Public License %% along with this program; if not, write to the Free Software %% Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 021101301USA +%% You should have received a copy of the GNU General Public License along with +%% this program; if not, see <http://www.gnu.org/licenses/>;. +%% [lb, idx, ridx, mv] = cpiv_bard (v, m[, incl]) +%% +%% v: column vector; m: matrix; incl (optional): index. length (v) +%% must equal rows (m). Finds column vectors w and l with w == v + m * +%% l, w >= 0, l >= 0, l.' * w == 0. Chooses idx, w, and l so that +%% l(~idx) == 0, l(idx) == inv (m(idx, idx)) * v(idx), w(idx) roughly +%% == 0, and w(~idx) == v(~idx) + m(idx, ~idx).' * l(idx). idx indexes +%% at least everything indexed by incl, but l(incl) may be < 0. lb: +%% l(idx) (column vector); idx: logical index, defined above; ridx: +%% ~idx & w roughly == 0; mv: [m, v] after performing a GaussJordan +%% 'sweep' (with gjp.m) on each diagonal element indexed by idx. +%% Except the handling of incl (which enables handling of equality +%% constraints in the calling code), this is called solving the +%% 'complementary pivot problem' (Cottle, R. W. and Dantzig, G. B., +%% 'Complementary pivot theory of mathematical programming', Linear +%% Algebra and Appl. 1, 102125. References for the current +%% algorithm: Bard, Y.: Nonlinear Parameter Estimation, p. 147149, +%% Academic Press, New York and London 1974; Bard, Y., 'An eclectic +%% approach to nonlinear programming', Proc. ANU Sem. Optimization, +%% Canberra, Austral. Nat. Univ.). + function [lb, idx, ridx, m] = cpiv_bard (v, m, incl)  %% [lb, idx, ridx, mv] = cpiv_bard (v, m[, incl])  %%  %% v: column vector; m: matrix; incl (optional): index. length (v)  %% must equal rows (m). Finds column vectors w and l with w == v + m *  %% l, w >= 0, l >= 0, l.' * w == 0. Chooses idx, w, and l so that  %% l(~idx) == 0, l(idx) == inv (m(idx, idx)) * v(idx), w(idx) roughly  %% == 0, and w(~idx) == v(~idx) + m(idx, ~idx).' * l(idx). idx indexes  %% at least everything indexed by incl, but l(incl) may be < 0. lb:  %% l(idx) (column vector); idx: logical index, defined above; ridx:  %% ~idx & w roughly == 0; mv: [m, v] after performing a GaussJordan  %% 'sweep' (with gjp.m) on each diagonal element indexed by idx.  %% Except the handling of incl (which enables handling of equality  %% constraints in the calling code), this is called solving the  %% 'complementary pivot problem' (Cottle, R. W. and Dantzig, G. B.,  %% 'Complementary pivot theory of mathematical programming', Linear  %% Algebra and Appl. 1, 102125. References for the current  %% algorithm: Bard, Y.: Nonlinear Parameter Estimation, p. 147149,  %% Academic Press, New York and London 1974; Bard, Y., 'An eclectic  %% approach to nonlinear programming', Proc. ANU Sem. Optimization,  %% Canberra, Austral. Nat. Univ.).  n = length (v); if (n > size (v, 1)) error ('first argument is no column vector'); % the most typical mistake Modified: trunk/octaveforge/main/optim/inst/curvefit_stat.m ===================================================================  trunk/octaveforge/main/optim/inst/curvefit_stat.m 20120330 15:02:12 UTC (rev 10115) +++ trunk/octaveforge/main/optim/inst/curvefit_stat.m 20120330 15:14:48 UTC (rev 10116) @@ 1,20 +1,19 @@ ## Copyright (C) 2011 Olaf Till <olaf.till@...> ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 3 of the License, or ## (at your option) any later version. +## This program is free software; you can redistribute it and/or modify it under +## the terms of the GNU General Public License as published by the Free Software +## Foundation; either version 3 of the License, or (at your option) any later +## version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. +## This program is distributed in the hope that it will be useful, but WITHOUT +## ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or +## FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more +## details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see <http://www.gnu.org/licenses/>;. +## You should have received a copy of the GNU General Public License along with +## this program; if not, see <http://www.gnu.org/licenses/>;. ## * texinfo * ## ## @deftypefn {Function File} {@var{info} =} residmin_stat (@var{f}, @var{p}, @var{x}, @var{y}, @var{settings}) ## ## Frontend for computation of statistics for fitting of values, @@ 30,7 +29,6 @@ ## also a second obligatory argument which will be set to @var{x}. ## ## @seealso {residmin_stat} ## ## @end deftypefn function ret = curvefit_stat (f, pfin, x, y, settings) Modified: trunk/octaveforge/main/optim/inst/d2_min.m ===================================================================  trunk/octaveforge/main/optim/inst/d2_min.m 20120330 15:02:12 UTC (rev 10115) +++ trunk/octaveforge/main/optim/inst/d2_min.m 20120330 15:14:48 UTC (rev 10116) @@ 1,18 +1,17 @@  ## Copyright (C) 2002 Etienne Grossmann. All rights reserved. +## Copyright (C) 2002 Etienne Grossmann <etienne@...> ## ## This program is free software; you can redistribute it and/or modify it ## under the terms of the GNU General Public License as published by the ## Free Software Foundation; either version 2, or (at your option) any ## later version. +## This program is free software; you can redistribute it and/or modify it under +## the terms of the GNU General Public License as published by the Free Software +## Foundation; either version 3 of the License, or (at your option) any later +## version. ## ## This is distributed in the hope that it will be useful, but WITHOUT +## This program is distributed in the hope that it will be useful, but WITHOUT ## ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or ## FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License ## for more details. +## FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more +## details. ## ## Changelog: ## 2002 / 05 / 09 : Heuristic for negative hessian +## You should have received a copy of the GNU General Public License along with +## this program; if not, see <http://www.gnu.org/licenses/>;. ## [x,v,nev,h,args] = d2_min(f,d2f,args,ctl,code)  Newtonlike minimization ## @@ 82,9 +81,6 @@ function [xbest,vbest,nev,hbest,args] = d2_min (f,d2f,args,ctl,code) ## Author : Etienne Grossmann <etienne@...> ##  maxout = inf; maxinner = 30 ; Modified: trunk/octaveforge/main/optim/inst/dcdp.m ===================================================================  trunk/octaveforge/main/optim/inst/dcdp.m 20120330 15:02:12 UTC (rev 10115) +++ trunk/octaveforge/main/optim/inst/dcdp.m 20120330 15:14:48 UTC (rev 10116) @@ 1,29 +1,29 @@ %% Copyright (C) 2010, 2011 Olaf Till <olaf.till@...> %% %% This program is free software; you can redistribute it and/or modify %% it under the terms of the GNU General Public License as published by %% the Free Software Foundation; either version 2 of the License, or %% (at your option) any later version. +%% This program is free software; you can redistribute it and/or modify it under +%% the terms of the GNU General Public License as published by the Free Software +%% Foundation; either version 3 of the License, or (at your option) any later +%% version. %% %% This program is distributed in the hope that it will be useful, %% but WITHOUT ANY WARRANTY; without even the implied warranty of %% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the %% GNU General Public License for more details. +%% This program is distributed in the hope that it will be useful, but WITHOUT +%% ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or +%% FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more +%% details. %% %% You should have received a copy of the GNU General Public License %% along with this program; If not, see <http://www.gnu.org/licenses/>;. +%% You should have received a copy of the GNU General Public License along with +%% this program; if not, see <http://www.gnu.org/licenses/>;. +%% function prt = dcdp (f, p, dp, func[, bounds]) +%% +%% This is an interface to __dfdp__.m, similar to dfdp.m, but for +%% functions only of parameters 'p', not of independents 'x'. See +%% dfdp.m. +%% +%% dfpdp is more general and is meant to be used instead of dcdp in +%% optimization. + function prt = dcdp (f, p, dp, func, bounds)  %% function prt = dcdp (f, p, dp, func[, bounds])  %%  %% This is an interface to __dfdp__.m, similar to dfdp.m, but for  %% functions only of parameters 'p', not of independents 'x'. See  %% dfdp.m.  %%  %% dfpdp is more general and is meant to be used instead of dcdp in  %% optimization.  if (ischar (func)) func = str2func (func); end @@ 40,3 +40,4 @@ hook.diff_onesided = dp < 0; prt = __dfdp__ (p, func, hook); +end Modified: trunk/octaveforge/main/optim/inst/de_min.m ===================================================================  trunk/octaveforge/main/optim/inst/de_min.m 20120330 15:02:12 UTC (rev 10115) +++ trunk/octaveforge/main/optim/inst/de_min.m 20120330 15:14:48 UTC (rev 10116) @@ 1,22 +1,18 @@ ## Copyright (C) 20092010 Christian Fischer <cfischer@...> ## Copyright (C) 1996, 1997 R. Storn +## Copyright (C) 20092010 Christian Fischer <cfischer@...> ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 3 of the License, or ## (at your option) any later version. +## This program is free software; you can redistribute it and/or modify it under +## the terms of the GNU General Public License as published by the Free Software +## Foundation; either version 3 of the License, or (at your option) any later +## version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. +## This program is distributed in the hope that it will be useful, but WITHOUT +## ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or +## FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more +## details. ## ## You should have received a copy of the GNU General Public ## License along with Octave; see the file COPYING. If not, ## see <http://www.gnu.org/licenses/>;. ## ## Changelog: ## +## You should have received a copy of the GNU General Public License along with +## this program; if not, see <http://www.gnu.org/licenses/>;. ## de_min: global optimisation using differential evolution ## @@ 121,7 +117,6 @@ ## ctl.XVmax = [ 2 2]; ## [x, obj_value, nfeval, convergence] = de_min (@f, ctl); ## ## Author : Christian Fischer <cfischer@...> ## Keywords: globaloptimisation optimisation minimisation function [bestmem, bestval, nfeval, convergence] = de_min(fcn, varargin) Modified: trunk/octaveforge/main/optim/inst/deriv.m ===================================================================  trunk/octaveforge/main/optim/inst/deriv.m 20120330 15:02:12 UTC (rev 10115) +++ trunk/octaveforge/main/optim/inst/deriv.m 20120330 15:14:48 UTC (rev 10116) @@ 2,15 +2,18 @@ ## Copyright (C) 2011 Joaquín Ignacio Aramendía <samsagax@...> ## Copyright (C) 2011 Carnë Draug <carandraug+dev@...> ## ## This program is free software; you can redistribute it and/or modify it ## under the terms of the GNU General Public License as published by the ## Free Software Foundation; either version 3, or (at your option) any ## later version. +## This program is free software; you can redistribute it and/or modify it under +## the terms of the GNU General Public License as published by the Free Software +## Foundation; either version 3 of the License, or (at your option) any later +## version. ## ## This is distributed in the hope that it will be useful, but WITHOUT +## This program is distributed in the hope that it will be useful, but WITHOUT ## ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or ## FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License ## for more details. +## FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more +## details. +## +## You should have received a copy of the GNU General Public License along with +## this program; if not, see <http://www.gnu.org/licenses/>;. ## * texinfo * ## @deftypefn {Function File} {@var{dx} =} deriv (@var{f}, @var{x0}) Modified: trunk/octaveforge/main/optim/inst/dfdp.m ===================================================================  trunk/octaveforge/main/optim/inst/dfdp.m 20120330 15:02:12 UTC (rev 10115) +++ trunk/octaveforge/main/optim/inst/dfdp.m 20120330 15:14:48 UTC (rev 10116) @@ 3,43 +3,43 @@ %% Copyright (C) 19921994 Ray Muzic %% Copyright (C) 2010, 2011 Olaf Till <olaf.till@...> %% %% This program is free software; you can redistribute it and/or modify %% it under the terms of the GNU General Public License as published by %% the Free Software Foundation; either version 2 of the License, or %% (at your option) any later version. +%% This program is free software; you can redistribute it and/or modify it under +%% the terms of the GNU General Public License as published by the Free Software +%% Foundation; either version 3 of the License, or (at your option) any later +%% version. %% %% This program is distributed in the hope that it will be useful, %% but WITHOUT ANY WARRANTY; without even the implied warranty of %% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the %% GNU General Public License for more details. +%% This program is distributed in the hope that it will be useful, but WITHOUT +%% ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or +%% FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more +%% details. %% %% You should have received a copy of the GNU General Public License %% along with this program; If not, see <http://www.gnu.org/licenses/>;. +%% You should have received a copy of the GNU General Public License along with +%% this program; if not, see <http://www.gnu.org/licenses/>;. +%% function prt = dfdp (x, f, p, dp, func[, bounds]) +%% numerical partial derivatives (Jacobian) df/dp for use with leasqr +%% INPUT VARIABLES +%% x=vec or matrix of indep var(used as arg to func) x=[x0 x1 ....] +%% f=func(x,p) vector initialsed by user before each call to dfdp +%% p= vec of current parameter values +%% dp= fractional increment of p for numerical derivatives +%% dp(j)>0 central differences calculated +%% dp(j)<0 one sided differences calculated +%% dp(j)=0 sets corresponding partials to zero; i.e. holds p(j) fixed +%% func=function (string or handle) to calculate the Jacobian for, +%% e.g. to calc Jacobian for function expsum prt=dfdp(x,f,p,dp,'expsum') +%% bounds=twocolumnmatrix of lower and upper bounds for parameters +%% If no 'bounds' options is specified to leasqr, it will call +%% dfdp without the 'bounds' argument. +%%OUTPUT VARIABLES +%% prt= Jacobian Matrix prt(i,j)=df(i)/dp(j) +%%================================ +%% +%% dfxpdp is more general and is meant to be used instead of dfdp in +%% optimization. + function prt = dfdp (x, f, p, dp, func, bounds)  %% function prt = dfdp (x, f, p, dp, func[, bounds])  %% numerical partial derivatives (Jacobian) df/dp for use with leasqr  %% INPUT VARIABLES  %% x=vec or matrix of indep var(used as arg to func) x=[x0 x1 ....]  %% f=func(x,p) vector initialsed by user before each call to dfdp  %% p= vec of current parameter values  %% dp= fractional increment of p for numerical derivatives  %% dp(j)>0 central differences calculated  %% dp(j)<0 one sided differences calculated  %% dp(j)=0 sets corresponding partials to zero; i.e. holds p(j) fixed  %% func=function (string or handle) to calculate the Jacobian for,  %% e.g. to calc Jacobian for function expsum prt=dfdp(x,f,p,dp,'expsum')  %% bounds=twocolumnmatrix of lower and upper bounds for parameters  %% If no 'bounds' options is specified to leasqr, it will call  %% dfdp without the 'bounds' argument.  %%OUTPUT VARIABLES  %% prt= Jacobian Matrix prt(i,j)=df(i)/dp(j)  %%================================  %%  %% dfxpdp is more general and is meant to be used instead of dfdp in  %% optimization.  %% This is just an interface. The original code has been moved to %% __dfdp__.m, which is used with two different interfaces by %% leasqr.m. Modified: trunk/octaveforge/main/optim/inst/dfpdp.m ===================================================================  trunk/octaveforge/main/optim/inst/dfpdp.m 20120330 15:02:12 UTC (rev 10115) +++ trunk/octaveforge/main/optim/inst/dfpdp.m 20120330 15:14:48 UTC (rev 10116) @@ 1,47 +1,46 @@ %% Copyright (C) 2010, 2011 Olaf Till <olaf.till@...> %% %% This program is free software; you can redistribute it and/or modify %% it under the terms of the GNU General Public License as published by %% the Free Software Foundation; either version 2 of the License, or %% (at your option) any later version. +%% This program is free software; you can redistribute it and/or modify it under +%% the terms of the GNU General Public License as published by the Free Software +%% Foundation; either version 3 of the License, or (at your option) any later +%% version. %% %% This program is distributed in the hope that it will be useful, %% but WITHOUT ANY WARRANTY; without even the implied warranty of %% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the %% GNU General Public License for more details. +%% This program is distributed in the hope that it will be useful, but WITHOUT +%% ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or +%% FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more +%% details. %% %% You should have received a copy of the GNU General Public License %% along with this program; If not, see <http://www.gnu.org/licenses/>;. +%% You should have received a copy of the GNU General Public License along with +%% this program; if not, see <http://www.gnu.org/licenses/>;. +%% function jac = dfpdp (p, func[, hook]) +%% +%% Returns Jacobian of func (p) with respect to p with finite +%% differencing. The optional argument hook is a structure which can +%% contain the following fields at the moment: +%% +%% hook.f: value of func(p) for p as given in the arguments +%% +%% hook.diffp: positive vector of fractional steps from given p in +%% finite differencing (actual steps may be smaller if bounds are +%% given). The default is .001 * ones (size (p)). +%% +%% hook.diff_onesided: logical vector, indexing elements of p for +%% which only onesided differences should be computed (faster); even +%% if not onesided, differences might not be exactly central if +%% bounds are given. The default is false (size (p)). +%% +%% hook.fixed: logical vector, indexing elements of p for which zero +%% should be returned instead of the guessed partial derivatives +%% (useful in optimization if some parameters are not optimized, but +%% are 'fixed'). +%% +%% hook.lbound, hook.ubound: vectors of lower and upper parameter +%% bounds (or Inf or +Inf, respectively) to be respected in finite +%% differencing. The consistency of bounds is not checked. + function ret = dfpdp (varargin)  %% function jac = dfpdp (p, func[, hook])  %%  %% Returns Jacobian of func (p) with respect to p with finite  %% differencing. The optional argument hook is a structure which can  %% contain the following fields at the moment:  %%  %% hook.f: value of func(p) for p as given in the arguments  %%  %% hook.diffp: positive vector of fractional steps from given p in  %% finite differencing (actual steps may be smaller if bounds are  %% given). The default is .001 * ones (size (p)).  %%  %% hook.diff_onesided: logical vector, indexing elements of p for  %% which only onesided differences should be computed (faster); even  %% if not onesided, differences might not be exactly central if  %% bounds are given. The default is false (size (p)).  %%  %% hook.fixed: logical vector, indexing elements of p for which zero  %% should be returned instead of the guessed partial derivatives  %% (useful in optimization if some parameters are not optimized, but  %% are 'fixed').  %%  %% hook.lbound, hook.ubound: vectors of lower and upper parameter  %% bounds (or Inf or +Inf, respectively) to be respected in finite  %% differencing. The consistency of bounds is not checked.   %% This is an interface to __dfdp__.m. if (ischar (varargin{2})) @@ 49,3 +48,5 @@ end ret = __dfdp__ (varargin{:}); + +end Modified: trunk/octaveforge/main/optim/inst/dfxpdp.m ===================================================================  trunk/octaveforge/main/optim/inst/dfxpdp.m 20120330 15:02:12 UTC (rev 10115) +++ trunk/octaveforge/main/optim/inst/dfxpdp.m 20120330 15:14:48 UTC (rev 10116) @@ 1,47 +1,46 @@ %% Copyright (C) 2010, 2011 Olaf Till <olaf.till@...> %% %% This program is free software; you can redistribute it and/or modify %% it under the terms of the GNU General Public License as published by %% the Free Software Foundation; either version 2 of the License, or %% (at your option) any later version. +%% This program is free software; you can redistribute it and/or modify it under +%% the terms of the GNU General Public License as published by the Free Software +%% Foundation; either version 3 of the License, or (at your option) any later +%% version. %% %% This program is distributed in the hope that it will be useful, %% but WITHOUT ANY WARRANTY; without even the implied warranty of %% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the %% GNU General Public License for more details. +%% This program is distributed in the hope that it will be useful, but WITHOUT +%% ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or +%% FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more +%% details. %% %% You should have received a copy of the GNU General Public License %% along with this program; If not, see <http://www.gnu.org/licenses/>;. +%% You should have received a copy of the GNU General Public License along with +%% this program; if not, see <http://www.gnu.org/licenses/>;. +%% function jac = dfxpdp (x, p, func[, hook]) +%% +%% Returns Jacobian of func (p, x) with respect to p with finite +%% differencing. The optional argument hook is a structure which can +%% contain the following fields at the moment: +%% +%% hook.f: value of func(p, x) for p and x as given in the arguments +%% +%% hook.diffp: positive vector of fractional steps from given p in +%% finite differencing (actual steps may be smaller if bounds are +%% given). The default is .001 * ones (size (p)); +%% +%% hook.diff_onesided: logical vector, indexing elements of p for +%% which only onesided differences should be computed (faster); even +%% if not onesided, differences might not be exactly central if +%% bounds are given. The default is false (size (p)). +%% +%% hook.fixed: logical vector, indexing elements of p for which zero +%% should be returned instead of the guessed partial derivatives +%% (useful in optimization if some parameters are not optimized, but +%% are 'fixed'). +%% +%% hook.lbound, hook.ubound: vectors of lower and upper parameter +%% bounds (or Inf or +Inf, respectively) to be respected in finite +%% differencing. The consistency of bounds is not checked. + function ret = dfxpdp (varargin)  %% function jac = dfxpdp (x, p, func[, hook])  %%  %% Returns Jacobian of func (p, x) with respect to p with finite  %% differencing. The optional argument hook is a structure which can  %% contain the following fields at the moment:  %%  %% hook.f: value of func(p, x) for p and x as given in the arguments  %%  %% hook.diffp: positive vector of fractional steps from given p in  %% finite differencing (actual steps may be smaller if bounds are  %% given). The default is .001 * ones (size (p));  %%  %% hook.diff_onesided: logical vector, indexing elements of p for  %% which only onesided differences should be computed (faster); even  %% if not onesided, differences might not be exactly central if  %% bounds are given. The default is false (size (p)).  %%  %% hook.fixed: logical vector, indexing elements of p for which zero  %% should be returned instead of the guessed partial derivatives  %% (useful in optimization if some parameters are not optimized, but  %% are 'fixed').  %%  %% hook.lbound, hook.ubound: vectors of lower and upper parameter  %% bounds (or Inf or +Inf, respectively) to be respected in finite  %% differencing. The consistency of bounds is not checked.   %% This is an interface to __dfdp__.m. if (ischar (varargin{3})) @@ 52,3 +51,5 @@ end ret = __dfdp__ (varargin{2:end}); + +end Modified: trunk/octaveforge/main/optim/inst/expfit.m ===================================================================  trunk/octaveforge/main/optim/inst/expfit.m 20120330 15:02:12 UTC (rev 10115) +++ trunk/octaveforge/main/optim/inst/expfit.m 20120330 15:14:48 UTC (rev 10116) @@ 1,3 +1,19 @@ +## Copyright (C) 2000 Gert Van den Eynde <na.gvandeneynde@...> +## Copyright (C) 2002 Rolf Fabian <fabian@...> +## +## This program is free software; you can redistribute it and/or modify it under +## the terms of the GNU General Public License as published by the Free Software +## Foundation; either version 3 of the License, or (at your option) any later +## version. +## +## This program is distributed in the hope that it will be useful, but WITHOUT +## ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or +## FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more +## details. +## +## You should have received a copy of the GNU General Public License along with +## this program; if not, see <http://www.gnu.org/licenses/>;. + ## USAGE [alpha,c,rms] = expfit( deg, x1, h, y ) ## ## Prony's method for nonlinear exponential fitting @@ 41,32 +57,13 @@ ## roots of a polynomial. I used 'roots.m', if there is ## something better please use that code. ## ## Copyright (C) 2000 Gert Van den Eynde ## SCKCEN (Nuclear Energy Research Centre) ## Boeretang 200 ## 2400 Mol ## Belgium ## na.gvandeneynde@... ## ## This code is under the GNU Public License (GPL) version 2 or later. ## I hope that it is useful, but it is WITHOUT ANY WARRANTY, without ## even the implied warranty of MERCHANTABILITY or FITNESS FOR A ## PARTICULAR PURPOSE. ## __________________________________________________________________ ## Modified for full compatibility with complex fitfunctions by ## Rolf Fabian <fabian@...> 2002Sep23 ## Brandenburg University of Technology Cottbus ## Dep. of Air Chemistry and Pollution Control ## ## Demo for a complex fitfunction: ## deg= 2; N= 20; x1= (1+i), x= linspace(x1,1+i/2,N).'; ## h = x(2)  x(1) ## y= (2+i)*exp( (12i)*x ) + (1+3i)*exp( (2+3i)*x ); ## A= 5e2; y+= A*(randn(N,1)+randn(N,1)*i); % add complex noise ## [alpha,c,rms]= expfit( deg, x1, h, y ) ## __________________________________________________________________  function [a,c,rms] = expfit(deg,x1,h,y) % Check input Modified: trunk/octaveforge/main/optim/inst/fmin.m ===================================================================  trunk/octaveforge/main/optim/inst/fmin.m 20120330 15:02:12 UTC (rev 10115) +++ trunk/octaveforge/main/optim/inst/fmin.m 20120330 15:14:48 UTC (rev 10116) @@ 1,22 +1,21 @@ ## Copyright (C) 2001 Paul Kienzle ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 2 of the License, or ## (at your option) any later version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see <http://www.gnu.org/licenses/>;. +## Copyright (C) 2001 Paul Kienzle <pkienzle@...> +## +## This program is free software; you can redistribute it and/or modify it under +## the terms of the GNU General Public License as published by the Free Software +## Foundation; either version 3 of the License, or (at your option) any later +## version. +## +## This program is distributed in the hope that it will be useful, but WITHOUT +## ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or +## FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more +## details. +## +## You should have received a copy of the GNU General Public License along with +## this program; if not, see <http://www.gnu.org/licenses/>;. function ret=fmin(varargin) ## alias for fminbnd + ret = fminbnd(varargin{:});  ret = fminbnd(varargin{:});  endfunction Modified: trunk/octaveforge/main/optim/inst/fmins.m ===================================================================  trunk/octaveforge/main/optim/inst/fmins.m 20120330 15:02:12 UTC (rev 10115) +++ trunk/octaveforge/main/optim/inst/fmins.m 20120330 15:14:48 UTC (rev 10116) @@ 1,17 +1,17 @@ ## Copyright (C) 2003 Andy Adler ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 2 of the License, or ## (at your option) any later version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see <http://www.gnu.org/licenses/>;. +## Copyright (C) 2003 Andy Adler <adler@...> +## +## This program is free software; you can redistribute it and/or modify it under +## the terms of the GNU General Public License as published by the Free Software +## Foundation; either version 3 of the License, or (at your option) any later +## version. +## +## This program is distributed in the hope that it will be useful, but WITHOUT +## ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or +## FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more +## details. +## +## You should have received a copy of the GNU General Public License along with +## this program; if not, see <http://www.gnu.org/licenses/>;. ## * texinfo * ## @deftypefn {Function File} {[@var{x}] =} fmins(@var{f},@var{X0},@var{options},@var{grad},@var{P1},@var{P2}, ...) Modified: trunk/octaveforge/main/optim/inst/fminsearch.m ===================================================================  trunk/octaveforge/main/optim/inst/fminsearch.m 20120330 15:02:12 UTC (rev 10115) +++ trunk/octaveforge/main/optim/inst/fminsearch.m 20120330 15:14:48 UTC (rev 10116) @@ 1,20 +1,20 @@ ## Copyright (C) 2006 Sylvain Pelissier <sylvain.pelissier@...> +## Copyright (C) 2006 Sylvain Pelissier <sylvain.pelissier@...> ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 2 of the License, or ## (at your option) any later version. +## This program is free software; you can redistribute it and/or modify it under +## the terms of the GNU General Public License as published by the Free Software +## Foundation; either version 3 of the License, or (at your option) any later +## version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. +## This program is distributed in the hope that it will be useful, but WITHOUT +## ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or +## FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more +## details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see <http://www.gnu.org/licenses/>;. +## You should have received a copy of the GNU General Public License along with +## this program; if not, see <http://www.gnu.org/licenses/>;. ## * texinfo * ## @deftypefn {Function File} {[@var{x}] =} fminsearch(@var{f},@var{X0},@var{options},@var{grad},@var{P1},@var{P2}, ...) +## @deftypefn {Function File} {[@var{x}] =} fminsearch(@var{f},@var{X0},@var{options},@var{grad},@var{P1},@var{P2}, @dots{}) ## ## Find the minimum of a funtion of several variables. ## By default the method used is the Nelder&Mead Simplex algorithm Modified: trunk/octaveforge/main/optim/inst/fminunc_compat.m ===================================================================  trunk/octaveforge/main/optim/inst/fminunc_compat.m 20120330 15:02:12 UTC (rev 10115) +++ trunk/octaveforge/main/optim/inst/fminunc_compat.m 20120330 15:14:48 UTC (rev 10116) @@ 1,14 +1,17 @@ ## Copyright (C) 2002 Etienne Grossmann. All rights reserved. +## Copyright (C) 2002 Etienne Grossmann <etienne@...> ## ## This program is free software; you can redistribute it and/or modify it ## under the terms of the GNU General Public License as published by the ## Free Software Foundation; either version 2, or (at your option) any ## later version. +## This program is free software; you can redistribute it and/or modify it under +## the terms of the GNU General Public License as published by the Free Software +## Foundation; either version 3 of the License, or (at your option) any later +## version. ## ## This is distributed in the hope that it will be useful, but WITHOUT +## This program is distributed in the hope that it will be useful, but WITHOUT ## ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or ## FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License ## for more details. +## FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more +## details. +## +## You should have received a copy of the GNU General Public License along with +## this program; if not, see <http://www.gnu.org/licenses/>;. ## [x,v,flag,out,df,d2f] = fminunc_compat (f,x,opt,...)  M*tlablike optimization ## Modified: trunk/octaveforge/main/optim/inst/gjp.m ===================================================================  trunk/octaveforge/main/optim/inst/gjp.m 20120330 15:02:12 UTC (rev 10115) +++ trunk/octaveforge/main/optim/inst/gjp.m 20120330 15:14:48 UTC (rev 10116) @@ 1,38 +1,37 @@ %% Copyright (C) 2010, 2011 Olaf Till +%% Copyright (C) 2010, 2011 Olaf Till <olaf.till@...> %% %% This program is free software; you can redistribute it and/or modify %% it under the terms of the GNU General Public License as published by %% the Free Software Foundation; either version 2 of the License, or (at %% your option) any later version. +%% This program is free software; you can redistribute it and/or modify it under +%% the terms of the GNU General Public License as published by the Free Software +%% Foundation; either version 3 of the License, or (at your option) any later +%% version. %% %% This program is distributed in the hope that it will be useful, but %% WITHOUT ANY WARRANTY; without even the implied warranty of %% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU %% General Public License for more details. +%% This program is distributed in the hope that it will be useful, but WITHOUT +%% ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or +%% FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more +%% details. %% %% You should have received a copy of the GNU General Public License %% along with this program; if not, write to the Free Software %% Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 021101301USA +%% You should have received a copy of the GNU General Public License along with +%% this program; if not, see <http://www.gnu.org/licenses/>;. +%% m = gjp (m, k[, l]) +%% +%% m: matrix; k, l: row and columnindex of pivot, l defaults to k. +%% +%% GaussJordon pivot as defined in Bard, Y.: Nonlinear Parameter +%% Estimation, p. 296, Academic Press, New York and London 1974. In +%% the pivot column, this seems not quite the same as the usual +%% GaussJordan(Clasen) pivot. Bard gives Beaton, A. E., 'The use of +%% special matrix operators in statistical calculus' Research Bulletin +%% RB6451 (1964), Educational Testing Service, Princeton, New Jersey +%% as a reference, but this article is not easily accessible. Another +%% reference, whose definition of gjp differs from Bards by some +%% signs, is Clarke, R. B., 'Algorithm AS 178: The GaussJordan sweep +%% operator with detection of collinearity', Journal of the Royal +%% Statistical Society, Series C (Applied Statistics) (1982), 31(2), +%% 166168. + function m = gjp (m, k, l)  %% m = gjp (m, k[, l])  %%  %% m: matrix; k, l: row and columnindex of pivot, l defaults to k.  %%  %% GaussJordon pivot as defined in Bard, Y.: Nonlinear Parameter  %% Estimation, p. 296, Academic Press, New York and London 1974. In  %% the pivot column, this seems not quite the same as the usual  %% GaussJordan(Clasen) pivot. Bard gives Beaton, A. E., 'The use of  %% special matrix operators in statistical calculus' Research Bulletin  %% RB6451 (1964), Educational Testing Service, Princeton, New Jersey  %% as a reference, but this article is not easily accessible. Another  %% reference, whose definition of gjp differs from Bards by some  %% signs, is Clarke, R. B., 'Algorithm AS 178: The GaussJordan sweep  %% operator with detection of collinearity', Journal of the Royal  %% Statistical Society, Series C (Applied Statistics) (1982), 31(2),  %% 166168.  if (nargin < 3) l = k; end @@ 51,3 +50,4 @@ m([1:k1, k+1:end], l) * m(k, [1:l1, l+1:end]); m([1:k1, k+1:end], l) =  m([1:k1, k+1:end], l) / p; % pivot column m(k, l) = 1 / p; +end Modified: trunk/octaveforge/main/optim/inst/jacobs.m ===================================================================  trunk/octaveforge/main/optim/inst/jacobs.m 20120330 15:02:12 UTC (rev 10115) +++ trunk/octaveforge/main/optim/inst/jacobs.m 20120330 15:14:48 UTC (rev 10116) @@ 1,17 +1,17 @@ ## Copyright (C) 2011 Fotios Kasolis <fotios.kasolis@...> ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 3 of the License, or ## (at your option) any later version. +## This program is free software; you can redistribute it and/or modify it under +## the terms of the GNU General Public License as published by the Free Software +## Foundation; either version 3 of the License, or (at your option) any later +## version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. +## This program is distributed in the hope that it will be useful, but WITHOUT +## ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or +## FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more +## details. ## ## You should have received a copy of the GNU General Public License ## along with this program; if not, see <http://www.gnu.org/licenses/>;. +## You should have received a copy of the GNU General Public License along with +## this program; if not, see <http://www.gnu.org/licenses/>;. ## * texinfo * ## @deftypefn {Function File} {Df =} jacobs (@var{x}, @var{f}) Modified: trunk/octaveforge/main/optim/inst/leasqr.m ===================================================================  trunk/octaveforge/main/optim/inst/leasqr.m 20120330 15:02:12 UTC (rev 10115) +++ trunk/octaveforge/main/optim/inst/leasqr.m 20120330 15:14:48 UTC (rev 10116) @@ 1,152 +1,156 @@ %% Copyright (C) 19921994 Richard Shrager %% Copyright (C) 19921994 Arthur Jutan %% Copyright (C) 19921994 Ray Muzic +%% Copyright (C) 19921994 Arthur Jutan <jutan@...> +%% Copyright (C) 19921994 Ray Muzic <rfm2@...> %% Copyright (C) 2010, 2011 Olaf Till <olaf.till@...> %% %% This program is free software; you can redistribute it and/or modify %% it under the terms of the GNU General Public License as published by %% the Free Software Foundation; either version 2 of the License, or %% (at your option) any later version. +%% This program is free software; you can redistribute it and/or modify it under +%% the terms of the GNU General Public License as published by the Free Software +%% Foundation; either version 3 of the License, or (at your option) any later +%% version. %% %% This program is distributed in the hope that it will be useful, %% but WITHOUT ANY WARRANTY; without even the implied warranty of %% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the %% GNU General Public License for more details. +%% This program is distributed in the hope that it will be useful, but WITHOUT +%% ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or +%% FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more +%% details. %% %% You should have received a copy of the GNU General Public License %% along with this program; If not, see <http://www.gnu.org/licenses/>;. +%% You should have received a copy of the GNU General Public License along with +%% this program; if not, see <http://www.gnu.org/licenses/>;. +%%function [f,p,cvg,iter,corp,covp,covr,stdresid,Z,r2]= +%% leasqr(x,y,pin,F,{stol,niter,wt,dp,dFdp,options}) +%% +%% LevenbergMarquardt nonlinear regression of f(x,p) to y(x). +%% +%% Version 3.beta +%% Optional parameters are in braces {}. +%% x = vector or matrix of independent variables. +%% y = vector or matrix of observed values. +%% wt = statistical weights (same dimensions as y). These should be +%% set to be proportional to (sqrt of var(y))^1; (That is, the +%% covariance matrix of the data is assumed to be proportional to +%% diagonal with diagonal equal to (wt.^2)^1. The constant of +%% proportionality will be estimated.); default = ones( size (y)). +%% pin = vec of initial parameters to be adjusted by leasqr. +%% dp = fractional increment of p for numerical partial derivatives; +%% default = .001*ones(size(pin)) +%% dp(j) > 0 means central differences on jth parameter p(j). +%% dp(j) < 0 means onesided differences on jth parameter p(j). +%% dp(j) = 0 holds p(j) fixed i.e. leasqr wont change initial guess: pin(j) +%% F = name of function in quotes or function handle; the function +%% shall be of the form y=f(x,p), with y, x, p of the form y, x, pin +%% as described above. +%% dFdp = name of partial derivative function in quotes or function +%% handle; default is 'dfdp', a slow but general partial derivatives +%% function; the function shall be of the form +%% prt=dfdp(x,f,p,dp,F[,bounds]). For backwards compatibility, the +%% function will only be called with an extra 'bounds' argument if the +%% 'bounds' option is explicitely specified to leasqr (see dfdp.m). +%% stol = scalar tolerance on fractional improvement in scalar sum of +%% squares = sum((wt.*(yf))^2); default stol = .0001; +%% niter = scalar maximum number of iterations; default = 20; +%% options = structure, currently recognized fields are 'fract_prec', +%% 'max_fract_change', 'inequc', 'bounds', and 'equc'. For backwards +%% compatibility, 'options' can also be a matrix whose first and +%% second column contains the values of 'fract_prec' and +%% 'max_fract_change', respectively. +%% Field 'options.fract_prec': column vector (same length as 'pin') +%% of desired fractional precisions in parameter estimates. +%% Iterations are terminated if change in parameter vector (chg) +%% relative to current parameter estimate is less than their +%% corresponding elements in 'options.fract_prec' [ie. all (abs +%% (chg) < abs (options.fract_prec .* current_parm_est))] on two +%% consecutive iterations, default = zeros(). +%% Field 'options.max_fract_change': column vector (same length as +%% 'pin) of maximum fractional step changes in parameter vector. +%% Fractional change in elements of parameter vector is constrained to +%% be at most 'options.max_fract_change' between sucessive iterations. +%% [ie. abs(chg(i))=abs(min([chg(i) +%% options.max_fract_change(i)*current param estimate])).], default = +%% Inf*ones(). +%% Field 'options.inequc': cellarray containing up to four entries, +%% two entries for linear inequality constraints and/or one or two +%% entries for general inequality constraints. Initial parameters +%% must satisfy these constraints. Either linear or general +%% constraints may be the first entries, but the two entries for +%% linear constraints must be adjacent and, if two entries are given +%% for general constraints, they also must be adjacent. The two +%% entries for linear constraints are a matrix (say m) and a vector +%% (say v), specifying linear inequality constraints of the form +%% `m.' * parameters + v >= 0'. If the constraints are just bounds, +%% it is suggested to specify them in 'options.bounds' instead, +%% since then some sanity tests are performed, and since the +%% function 'dfdp.m' is guarantied not to violate constraints during +%% determination of the numeric gradient only for those constraints +%% specified as 'bounds' (possibly with violations due to a certain +%% inaccuracy, however, except if no constraints except bounds are +%% specified). The first entry for general constraints must be a +%% differentiable vector valued function (say h), specifying general +%% inequality constraints of the form `h (p[, idx]) >= 0'; p is the +%% column vector of optimized paraters and the optional argument idx +%% is a logical index. h has to return the values of all constraints +%% if idx is not given, and has to return only the indexed +%% constraints if idx is given (so computation of the other +%% constraints can be spared). If a second entry for general +%% constraints is given, it must be a function (say dh) which +%% returnes a matrix whos rows contain the gradients of the +%% constraint function h with respect to the optimized parameters. +%% It has the form jac_h = dh (vh, p, dp, h, idx[, bounds]); p is +%% the column vector of optimized parameters, and idx is a logical +%% index  only the rows indexed by idx must be returned (so +%% computation of the others can be spared). The other arguments of +%% dh are for the case that dh computes numerical gradients: vh is +%% the column vector of the current values of the constraint +%% function h, with idx already applied. h is a function h (p) to +%% compute the values of the constraints for parameters p, it will +%% return only the values indexed by idx. dp is a suggestion for +%% relative step width, having the same value as the argument 'dp' +%% of leasqr above. If bounds were specified to leasqr, they are +%% provided in the argument bounds of dh, to enable their +%% consideration in determination of numerical gradients. If dh is +%% not specified to leasqr, numerical gradients are computed in the +%% same way as with 'dfdp.m' (see above). If some constraints are +%% linear, they should be specified as linear constraints (or +%% bounds, if applicable) for reasons of performance, even if +%% general constraints are also specified. +%% Field 'options.bounds': twocolumnmatrix, one row for each +%% parameter in 'pin'. Each row contains a minimal and maximal value +%% for each parameter. Default: [Inf, Inf] in each row. If this +%% field is used with an existing userside function for 'dFdp' +%% (see above) the functions interface might have to be changed. +%% Field 'options.equc': equality constraints, specified the same +%% way as inequality constraints (see field 'options.inequc'). +%% Initial parameters must satisfy these constraints. +%% Note that there is possibly a certain inaccuracy in honoring +%% constraints, except if only bounds are specified. +%% _Warning_: If constraints (or bounds) are set, returned guesses +%% of corp, covp, and Z are generally invalid, even if no constraints +%% are active for the final parameters. If equality constraints are +%% specified, corp, covp, and Z are not guessed at all. +%% Field 'options.cpiv': Function for complementary pivot algorithm +%% for inequality constraints, default: cpiv_bard. No different +%% function is supplied. +%% +%% OUTPUT VARIABLES +%% f = column vector of values computed: f = F(x,p). +%% p = column vector trial or final parameters. i.e, the solution. +%% cvg = scalar: = 1 if convergence, = 0 otherwise. +%% iter = scalar number of iterations used. +%% corp = correlation matrix for parameters. +%% covp = covariance matrix of the parameters. +%% covr = diag(covariance matrix of the residuals). +%% stdresid = standardized residuals. +%% Z = matrix that defines confidence region (see comments in the source). +%% r2 = coefficient of multiple determination, intercept form. +%% +%% Not suitable for nonreal residuals. +%% +%% References: +%% Bard, Nonlinear Parameter Estimation, Academic Press, 1974. +%% Draper and Smith, Applied Regression Analysis, John Wiley and Sons, 1981. + function [f,p,cvg,iter,corp,covp,covr,stdresid,Z,r2]= ... leasqr(x,y,pin,F,stol,niter,wt,dp,dFdp,options)  %%function [f,p,cvg,iter,corp,covp,covr,stdresid,Z,r2]=  %% leasqr(x,y,pin,F,{stol,niter,wt,dp,dFdp,options})  %%  %% LevenbergMarquardt nonlinear regression of f(x,p) to y(x).  %%  %% Version 3.beta  %% Optional parameters are in braces {}.  %% x = vector or matrix of independent variables.  %% y = vector or matrix of observed values.  %% wt = statistical weights (same dimensions as y). These should be  %% set to be proportional to (sqrt of var(y))^1; (That is, the  %% covariance matrix of the data is assumed to be proportional to  %% diagonal with diagonal equal to (wt.^2)^1. The constant of  %% proportionality will be estimated.); default = ones( size (y)).  %% pin = vec of initial parameters to be adjusted by leasqr.  %% dp = fractional increment of p for numerical partial derivatives;  %% default = .001*ones(size(pin))  %% dp(j) > 0 means central differences on jth parameter p(j).  %% dp(j) < 0 means onesided differences on jth parameter p(j).  %% dp(j) = 0 holds p(j) fixed i.e. leasqr wont change initial guess: pin(j)  %% F = name of function in quotes or function handle; the function  %% shall be of the form y=f(x,p), with y, x, p of the form y, x, pin  %% as described above.  %% dFdp = name of partial derivative function in quotes or function  %% handle; default is 'dfdp', a slow but general partial derivatives  %% function; the function shall be of the form  %% prt=dfdp(x,f,p,dp,F[,bounds]). For backwards compatibility, the  %% function will only be called with an extra 'bounds' argument if the  %% 'bounds' option is explicitely specified to leasqr (see dfdp.m).  %% stol = scalar tolerance on fractional improvement in scalar sum of  %% squares = sum((wt.*(yf))^2); default stol = .0001;  %% niter = scalar maximum number of iterations; default = 20;  %% options = structure, currently recognized fields are 'fract_prec',  %% 'max_fract_change', 'inequc', 'bounds', and 'equc'. For backwards  %% compatibility, 'options' can also be a matrix whose first and  %% second column contains the values of 'fract_prec' and  %% 'max_fract_change', respectively.  %% Field 'options.fract_prec': column vector (same length as 'pin')  %% of desired fractional precisions in parameter estimates.  %% Iterations are terminated if change in parameter vector (chg)  %% relative to current parameter estimate is less than their  %% corresponding elements in 'options.fract_prec' [ie. all (abs  %% (chg) < abs (options.fract_prec .* current_parm_est))] on two  %% consecutive iterations, default = zeros().  %% Field 'options.max_fract_change': column vector (same length as  %% 'pin) of maximum fractional step changes in parameter vector.  %% Fractional change in elements of parameter vector is constrained to  %% be at most 'options.max_fract_change' between sucessive iterations.  %% [ie. abs(chg(i))=abs(min([chg(i)  %% options.max_fract_change(i)*current param estimate])).], default =  %% Inf*ones().  %% Field 'options.inequc': cellarray containing up to four entries,  %% two entries for linear inequality constraints and/or one or two  %% entries for general inequality constraints. Initial parameters  %% must satisfy these constraints. Either linear or general  %% constraints may be the first entries, but the two entries for  %% linear constraints must be adjacent and, if two entries are given  %% for general constraints, they also must be adjacent. The two  %% entries for linear constraints are a matrix (say m) and a vector  %% (say v), specifying linear inequality constraints of the form  %% `m.' * parameters + v >= 0'. If the constraints are just bounds,  %% it is suggested to specify them in 'options.bounds' instead,  %% since then some sanity tests are performed, and since the  %% function 'dfdp.m' is guarantied not to violate constraints during  %% determination of the numeric gradient only for those constraints  %% specified as 'bounds' (possibly with violations due to a certain  %% inaccuracy, however, except if no constraints except bounds are  %% specified). The first entry for general constraints must be a  %% differentiable vector valued function (say h), specifying general @@ Diff output truncated at 100000 characters. @@ This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. 
From: <jordigh@us...>  20120330 15:02:23

Revision: 10115 http://octave.svn.sourceforge.net/octave/?rev=10115&view=rev Author: jordigh Date: 20120330 15:02:12 +0000 (Fri, 30 Mar 2012) Log Message:  Add HDF5 linking flags Modified Paths:  trunk/octaveforge/main/fixed/src/Makefile Modified: trunk/octaveforge/main/fixed/src/Makefile ===================================================================  trunk/octaveforge/main/fixed/src/Makefile 20120330 14:27:16 UTC (rev 10114) +++ trunk/octaveforge/main/fixed/src/Makefile 20120330 15:02:12 UTC (rev 10115) @@ 1,5 +1,7 @@ sinclude Makeconf +HDF5_LIBS := $(shell grep "\#define OCTAVE_CONF_HDF5_LIBS" $(shell mkoctfile p OCTINCLUDEDIR)/octconf.h  sed "s/^.*LIBS //" ) + FIXEDVERTARGET = fixedversion.h FIXEDTARGET = fixed.oct @@ 74,7 +76,7 @@ $(FIXEDTARGET) : $(DEPENDS) $(FIXEDOBJECTS) @echo "Linking $@";  $(MKOCTFILE) $(ADD_FLAGS) $(MOFLAGS) $(FIXEDOBJECTS) $(EXTRALIBS) o $@ + $(MKOCTFILE) $(ADD_FLAGS) $(MOFLAGS) $(FIXEDOBJECTS) $(EXTRALIBS) $(HDF5_LIBS) o $@ $(FIXEDVERTARGET) : @echo "Creating $@"; $(RM) f $@; This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. 
From: <carandraug@us...>  20120330 14:27:22

Revision: 10114 http://octave.svn.sourceforge.net/octave/?rev=10114&view=rev Author: carandraug Date: 20120330 14:27:16 +0000 (Fri, 30 Mar 2012) Log Message:  maint: change text file encoding to UTF8. No code change Modified Paths:  trunk/octaveforge/main/optim/inst/leasqr.m Modified: trunk/octaveforge/main/optim/inst/leasqr.m ===================================================================  trunk/octaveforge/main/optim/inst/leasqr.m 20120330 12:29:17 UTC (rev 10113) +++ trunk/octaveforge/main/optim/inst/leasqr.m 20120330 14:27:16 UTC (rev 10114) @@ 202,7 +202,7 @@ %% 8) Change to more efficent algorithm of Bard for selecting epsL. %% 9) Tighten up memory usage by making use of sparse matrices (if %% MATLAB version >= 4.0) in computation of covp, corp, stdresid.  %% Modified by Francesco Potort\xEC + %% Modified by Francesco Potortì %% for use in Octave %% Added linear inequality constraints with quadratic programming to %% this file and special case bounds to this file and to dfdp.m This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. 
From: <carandraug@us...>  20120330 12:29:23

Revision: 10113 http://octave.svn.sourceforge.net/octave/?rev=10113&view=rev Author: carandraug Date: 20120330 12:29:17 +0000 (Fri, 30 Mar 2012) Log Message:  optim: package is no longer automatically loaded Modified Paths:  trunk/octaveforge/main/optim/DESCRIPTION trunk/octaveforge/main/optim/NEWS Modified: trunk/octaveforge/main/optim/DESCRIPTION ===================================================================  trunk/octaveforge/main/optim/DESCRIPTION 20120330 12:27:14 UTC (rev 10112) +++ trunk/octaveforge/main/optim/DESCRIPTION 20120330 12:29:17 UTC (rev 10113) @@ 1,11 +1,11 @@ Name: Optim Version: 1.0.18 Date: 20111130 Author: Various Authors Maintainer: The Octave Community +Author: various authors +Maintainer: OctaveForge community <octavedev@...> Title: Optimization. Description: Nonlinear optimization toolkit. Depends: octave (>= 2.9.7), miscellaneous (>= 1.0.10), struct (>= 1.0.9) Autoload: yes +Autoload: no License: GPL version 2 or later and GFDL Url: http://octave.sf.net Modified: trunk/octaveforge/main/optim/NEWS ===================================================================  trunk/octaveforge/main/optim/NEWS 20120330 12:27:14 UTC (rev 10112) +++ trunk/octaveforge/main/optim/NEWS 20120330 12:29:17 UTC (rev 10113) @@ 17,3 +17,5 @@ deriv linprog ** The function `line_min' has a configurable setpesize and max evals + + ** Package is no longer automatically loaded. This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. 
From: <carandraug@us...>  20120330 12:27:20

Revision: 10112 http://octave.svn.sourceforge.net/octave/?rev=10112&view=rev Author: carandraug Date: 20120330 12:27:14 +0000 (Fri, 30 Mar 2012) Log Message:  optim: update NEWS file Modified Paths:  trunk/octaveforge/main/optim/NEWS Modified: trunk/octaveforge/main/optim/NEWS ===================================================================  trunk/octaveforge/main/optim/NEWS 20120330 11:56:24 UTC (rev 10111) +++ trunk/octaveforge/main/optim/NEWS 20120330 12:27:14 UTC (rev 10112) @@ 1,9 +1,19 @@ Summary of important uservisible changes for optim 1.1.0:  + ** The following functions are new optim 1.1.0: + + powell + ** The following functions have been deprecated since they have been implemented in Octave core: fminunc_compat optimset_compat ** The package Makefile has been adapted for compatibility with Octave 3.6.0. + + ** Bugfixes on the functions: + + deriv linprog + + ** The function `line_min' has a configurable setpesize and max evals This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. 
From: <carandraug@us...>  20120330 11:56:35

Revision: 10111 http://octave.svn.sourceforge.net/octave/?rev=10111&view=rev Author: carandraug Date: 20120330 11:56:24 +0000 (Fri, 30 Mar 2012) Log Message:  optim: mention deprecated functions on NEWS and make warning appear only once per session Modified Paths:  trunk/octaveforge/main/optim/NEWS trunk/octaveforge/main/optim/inst/fminunc_compat.m trunk/octaveforge/main/optim/inst/optimset_compat.m Modified: trunk/octaveforge/main/optim/NEWS ===================================================================  trunk/octaveforge/main/optim/NEWS 20120330 11:10:16 UTC (rev 10110) +++ trunk/octaveforge/main/optim/NEWS 20120330 11:56:24 UTC (rev 10111) @@ 1,6 +1,9 @@ Summary of important uservisible changes for optim 1.0.18: +Summary of important uservisible changes for optim 1.1.0:   ** The package makefile has been adapted for compatibility with Octave 3.6.0. + ** The following functions have been deprecated since they have been + implemented in Octave core:  ** There is now a 'NEWS' file. + fminunc_compat optimset_compat + + ** The package Makefile has been adapted for compatibility with Octave 3.6.0. Modified: trunk/octaveforge/main/optim/inst/fminunc_compat.m ===================================================================  trunk/octaveforge/main/optim/inst/fminunc_compat.m 20120330 11:10:16 UTC (rev 10110) +++ trunk/octaveforge/main/optim/inst/fminunc_compat.m 20120330 11:56:24 UTC (rev 10111) @@ 42,9 +42,15 @@ ## the 'backend' option of minimize(). ## ## This function is a frontend to minimize(). + function [x,fval,flag,out,df,d2f] = fminunc_compat (fun,x0,opt,varargin)  warning ("'fminunc_compat' has been deprecated in favor of 'fminunc', which is now part of core Octave. This function will possibly be removed from future versions of the 'optim' package."); + persistent warned = false; + if (! warned) + warned = true; + warning ("Octave:deprecatedfunction", + "`fminunc_compat' has been deprecated, and will be removed in the future. Use `fminunc' from Octave core instead."); + endif if nargin < 3, opt = struct (); end if nargin > 3, Modified: trunk/octaveforge/main/optim/inst/optimset_compat.m ===================================================================  trunk/octaveforge/main/optim/inst/optimset_compat.m 20120330 11:10:16 UTC (rev 10110) +++ trunk/octaveforge/main/optim/inst/optimset_compat.m 20120330 11:56:24 UTC (rev 10111) @@ 41,7 +41,12 @@ ## Display , ["off","iter","notify","final"] ## : N/A  warning ("'optimset_compat' has been deprecated in favor of 'optimset', which is now part of core Octave. This function will possibly be removed from future versions of the 'optim' package."); + persistent warned = false; + if (! warned) + warned = true; + warning ("Octave:deprecatedfunction", + "`optimset_compat' has been deprecated, and will be removed in the future. Use `optimset' from Octave core instead."); + endif args = varargin; This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. 
From: <carandraug@us...>  20120330 11:10:30

Revision: 10110 http://octave.svn.sourceforge.net/octave/?rev=10110&view=rev Author: carandraug Date: 20120330 11:10:16 +0000 (Fri, 30 Mar 2012) Log Message:  optiminterp: update license to GPLv3+ and added copyright notice to missing files Modified Paths:  trunk/octaveforge/main/optiminterp/COPYING trunk/octaveforge/main/optiminterp/DESCRIPTION trunk/octaveforge/main/optiminterp/INDEX trunk/octaveforge/main/optiminterp/inst/example_optiminterp.m trunk/octaveforge/main/optiminterp/inst/optiminterp1.m trunk/octaveforge/main/optiminterp/inst/optiminterp2.m trunk/octaveforge/main/optiminterp/inst/optiminterp3.m trunk/octaveforge/main/optiminterp/inst/optiminterp4.m trunk/octaveforge/main/optiminterp/inst/optiminterpn.m trunk/octaveforge/main/optiminterp/inst/test_optiminterp.m trunk/octaveforge/main/optiminterp/inst/test_optiminterp_err.m trunk/octaveforge/main/optiminterp/inst/test_optiminterp_mult.m trunk/octaveforge/main/optiminterp/src/example_optiminterp.F90 trunk/octaveforge/main/optiminterp/src/optimal_interpolation.F90 trunk/octaveforge/main/optiminterp/src/optiminterp.cc trunk/octaveforge/main/optiminterp/src/optiminterp_wrapper.F90 Modified: trunk/octaveforge/main/optiminterp/COPYING ===================================================================  trunk/octaveforge/main/optiminterp/COPYING 20120330 09:48:55 UTC (rev 10109) +++ trunk/octaveforge/main/optiminterp/COPYING 20120330 11:10:16 UTC (rev 10110) @@ 1,300 +1,642 @@  GNU GENERAL PUBLIC LICENSE  Version 2, June 1991 + GNU GENERAL PUBLIC LICENSE + Version 3, 29 June 2007  Copyright (C) 1989, 1991 Free Software Foundation, Inc., <http://fsf.org>; + Copyright (C) 2007 Free Software Foundation, Inc. <http://fsf.org/>; Everyone is permitted to copy and distribute verbatim copies of this license document, but changing it is not allowed.  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Interpretation of Sections 15 and 16. + + If the disclaimer of warranty and limitation of liability provided +above cannot be given local legal effect according to their terms, +reviewing courts shall apply local law that most closely approximates +an absolute waiver of all civil liability in connection with the +Program, unless a warranty or assumption of liability accompanies a +copy of the Program in return for a fee. + + END OF TERMS AND CONDITIONS + + How to Apply These Terms to Your New Programs + If you develop a new program, and you want it to be of the greatest possible use to the public, the best way to achieve this is to make it free software which everyone can redistribute and change under these terms. To do so, attach the following notices to the program. It is safest to attach them to the start of each source file to most effectively convey the exclusion of warranty; and each file should have at least +state the exclusion of warranty; and each file should have at least the "copyright" line and a pointer to where the full notice is found. <one line to give the program's name and a brief idea of what it does.> Copyright (C) <year> <name of author>  This program is free software; you can redistribute it and/or modify + This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by  the Free Software Foundation; either version 2 of the License, or + the Free Software Foundation, either version 3 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, @@ 302,36 +644,31 @@ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.  You should have received a copy of the GNU General Public License along  with this program; if not, see <http://www.gnu.org/licenses/>;. + You should have received a copy of the GNU General Public License + along with this program. If not, see <http://www.gnu.org/licenses/>;. Also add information on how to contact you by electronic and paper mail. If the program is interactive, make it output a short notice like this when it starts in an interactive mode: + If the program does terminal interaction, make it output a short +notice like this when it starts in an interactive mode:  Gnomovision version 69, Copyright (C) year name of author  Gnomovision comes with ABSOLUTELY NO WARRANTY; for details type `show w'. + <program> Copyright (C) <year> <name of author> + This program comes with ABSOLUTELY NO WARRANTY; for details type `show w'. This is free software, and you are welcome to redistribute it under certain conditions; type `show c' for details. The hypothetical commands `show w' and `show c' should show the appropriate parts of the General Public License. Of course, the commands you use may be called something other than `show w' and `show c'; they could even be mouseclicks or menu itemswhatever suits your program. +parts of the General Public License. Of course, your program's commands +might be different; for a GUI interface, you would use an "about box". You should also get your employer (if you work as a programmer) or your school, if any, to sign a "copyright disclaimer" for the program, if necessary. Here is a sample; alter the names: + You should also get your employer (if you work as a programmer) or school, +if any, to sign a "copyright disclaimer" for the program, if necessary. +For more information on this, and how to apply and follow the GNU GPL, see +<http://www.gnu.org/licenses/>;.  Yoyodyne, Inc., hereby disclaims all copyright interest in the program  `Gnomovision' (which makes passes at compilers) written by James Hacker.   <signature of Ty Coon>, 1 April 1989  Ty Coon, President of Vice  This General Public License does not permit incorporating your program into proprietary programs. If your program is a subroutine library, you may consider it more useful to permit linking proprietary applications with the library. If this is what you want to do, use the GNU Lesser General Public License instead of this License. + The GNU General Public License does not permit incorporating your program +into proprietary programs. If your program is a subroutine library, you +may consider it more useful to permit linking proprietary applications with +the library. If this is what you want to do, use the GNU Lesser General +Public License instead of this License. But first, please read +<http://www.gnu.org/philosophy/whynotlgpl.html>;. Modified: trunk/octaveforge/main/optiminterp/DESCRIPTION ===================================================================  trunk/octaveforge/main/optiminterp/DESCRIPTION 20120330 09:48:55 UTC (rev 10109) +++ trunk/octaveforge/main/optiminterp/DESCRIPTION 20120330 11:10:16 UTC (rev 10110) @@ 7,5 +7,5 @@ Description: An optimal interpolation toolbox for octave. This package provides functions to perform a ndimensional optimal interpolations of arbitrarily distributed data points. Depends: octave (>= 2.9.9) Autoload: yes License: GPL version 2 or later +License: GPLv3+ Url: http://octave.sf.net Modified: trunk/octaveforge/main/optiminterp/INDEX ===================================================================  trunk/octaveforge/main/optiminterp/INDEX 20120330 09:48:55 UTC (rev 10109) +++ trunk/octaveforge/main/optiminterp/INDEX 20120330 11:10:16 UTC (rev 10110) @@ 1,6 +1,6 @@ optiminterp >> OptimInterp OptimInterp  optiminterp1 + optiminterp1 optiminterp2 optiminterp3 optiminterp4 Modified: trunk/octaveforge/main/optiminterp/inst/example_optiminterp.m ===================================================================  trunk/octaveforge/main/optiminterp/inst/example_optiminterp.m 20120330 09:48:55 UTC (rev 10109) +++ trunk/octaveforge/main/optiminterp/inst/example_optiminterp.m 20120330 11:10:16 UTC (rev 10110) @@ 1,17 +1,17 @@ %% Copyright (C) 2008 Alexander Barth +%% Copyright (C) 2008 Alexander Barth <barth.alexander@...> %% %% This program is free software; you can redistribute it and/or modify %% it under the terms of the GNU General Public License as published by %% the Free Software Foundation; either version 2 of the License, or %% (at your option) any later version. +%% This program is free software; you can redistribute it and/or modify it under +%% the terms of the GNU General Public License as published by the Free Software +%% Foundation; either version 3 of the License, or (at your option) any later +%% version. %% %% This program is distributed in the hope that it will be useful, %% but WITHOUT ANY WARRANTY; without even the implied warranty of %% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the %% GNU General Public License for more details. +%% This program is distributed in the hope that it will be useful, but WITHOUT +%% ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or +%% FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more +%% details. %% %% You should have received a copy of the GNU General Public License %% along with this program; If not, see <http://www.gnu.org/licenses/>;. +%% You should have received a copy of the GNU General Public License along with +%% this program; if not, see <http://www.gnu.org/licenses/>;. % Example program of the optimal interpolation toolbox @@ 64,4 +64,4 @@ % Add the first guess back xa = fi + xb; \ No newline at end of file +xa = fi + xb; Modified: trunk/octaveforge/main/optiminterp/inst/optiminterp1.m ===================================================================  trunk/octaveforge/main/optiminterp/inst/optiminterp1.m 20120330 09:48:55 UTC (rev 10109) +++ trunk/octaveforge/main/optiminterp/inst/optiminterp1.m 20120330 11:10:16 UTC (rev 10110) @@ 1,17 +1,17 @@ ## Copyright (C) 2006 Alexander Barth +## Copyright (C) 2006 Alexander Barth <barth.alexander@...> ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 2 of the License, or ## (at your option) any later version. +## This program is free software; you can redistribute it and/or modify it under +## the terms of the GNU General Public License as published by the Free Software +## Foundation; either version 3 of the License, or (at your option) any later +## version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. +## This program is distributed in the hope that it will be useful, but WITHOUT +## ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or +## FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more +## details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see <http://www.gnu.org/licenses/>;. +## You should have received a copy of the GNU General Public License along with +## this program; if not, see <http://www.gnu.org/licenses/>;. ## * texinfo * ## @deftypefn {Loadable Function} {[@var{fi},@var{vari}]} = optiminterp1(@var{x},@var{f},@var{var},@var{lenx},@var{m},@var{xi}) @@ 34,8 +34,8 @@ ## background is added back to the interpolated field. ## @end deftypefn +function [fi,vari] = optiminterp1(x,f,var,lenx,m,xi) + [fi,vari] = optiminterpn(x,f,var,lenx,m,xi); function [fi,vari] = optiminterp1(x,f,var,lenx,m,xi)  [fi,vari] = optiminterpn(x,f,var,lenx,m,xi); +endfunction Modified: trunk/octaveforge/main/optiminterp/inst/optiminterp2.m ===================================================================  trunk/octaveforge/main/optiminterp/inst/optiminterp2.m 20120330 09:48:55 UTC (rev 10109) +++ trunk/octaveforge/main/optiminterp/inst/optiminterp2.m 20120330 11:10:16 UTC (rev 10110) @@ 1,17 +1,17 @@ ## Copyright (C) 2006 Alexander Barth +## Copyright (C) 2006 Alexander Barth <barth.alexander@...> ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 2 of the License, or ## (at your option) any later version. +## This program is free software; you can redistribute it and/or modify it under +## the terms of the GNU General Public License as published by the Free Software +## Foundation; either version 3 of the License, or (at your option) any later +## version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. +## This program is distributed in the hope that it will be useful, but WITHOUT +## ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or +## FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more +## details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see <http://www.gnu.org/licenses/>;. +## You should have received a copy of the GNU General Public License along with +## this program; if not, see <http://www.gnu.org/licenses/>;. ## * texinfo * ## @deftypefn {Loadable Function} {[@var{fi},@var{vari}] = } optiminterp2(@var{x},@var{y},@var{f},@var{var},@var{lenx},@var{leny},@var{m},@var{xi},@var{yi}) @@ 37,9 +37,8 @@ ## have a error variance of one. ## @end deftypefn ## Copyright (C) 2006, Alexander Barth ## Author: Alexander Barth <barth.alexander@...>  function [fi,vari] = optiminterp2(x,y,f,var,lenx,leny,m,xi,yi) [fi,vari] = optiminterpn(x,y,f,var,lenx,leny,m,xi,yi); + [fi,vari] = optiminterpn(x,y,f,var,lenx,leny,m,xi,yi); + +endfunction Modified: trunk/octaveforge/main/optiminterp/inst/optiminterp3.m ===================================================================  trunk/octaveforge/main/optiminterp/inst/optiminterp3.m 20120330 09:48:55 UTC (rev 10109) +++ trunk/octaveforge/main/optiminterp/inst/optiminterp3.m 20120330 11:10:16 UTC (rev 10110) @@ 1,17 +1,17 @@ ## Copyright (C) 2006 Alexander Barth +## Copyright (C) 2006 Alexander Barth <barth.alexander@...> ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 2 of the License, or ## (at your option) any later version. +## This program is free software; you can redistribute it and/or modify it under +## the terms of the GNU General Public License as published by the Free Software +## Foundation; either version 3 of the License, or (at your option) any later +## version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. +## This program is distributed in the hope that it will be useful, but WITHOUT +## ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or +## FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more +## details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see <http://www.gnu.org/licenses/>;. +## You should have received a copy of the GNU General Public License along with +## this program; if not, see <http://www.gnu.org/licenses/>;. ## * texinfo * ## @deftypefn {Loadable Function} {[@var{fi},@var{vari}] = } optiminterp3(@var{x},@var{y},@var{z},@var{f},@var{var},@var{lenx},@var{leny},@var{lenz},@var{m},@var{xi},@var{yi},@var{zi}) @@ 39,9 +39,8 @@ ## have a error variance of one. ## @end deftypefn ## Copyright (C) 2006, Alexander Barth ## Author: Alexander Barth <barth.alexander@...>  function [fi,vari] = optiminterp3(x,y,z,f,var,lenx,leny,lenz,m,xi,yi,zi) [fi,vari] = optiminterpn(x,y,z,f,var,lenx,leny,lenz,m,xi,yi,zi); + [fi,vari] = optiminterpn(x,y,z,f,var,lenx,leny,lenz,m,xi,yi,zi); + +endfunction Modified: trunk/octaveforge/main/optiminterp/inst/optiminterp4.m ===================================================================  trunk/octaveforge/main/optiminterp/inst/optiminterp4.m 20120330 09:48:55 UTC (rev 10109) +++ trunk/octaveforge/main/optiminterp/inst/optiminterp4.m 20120330 11:10:16 UTC (rev 10110) @@ 1,17 +1,18 @@ ## Copyright (C) 2007 Aida AlveraAzcárate +## Copyright (C) 2007 Aida AlveraAzcárate <aalvera@...> +## Copyright (C) 2007 Alexander Barth <barth.alexander@...> ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 2 of the License, or ## (at your option) any later version. +## This program is free software; you can redistribute it and/or modify it under +## the terms of the GNU General Public License as published by the Free Software +## Foundation; either version 3 of the License, or (at your option) any later +## version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. +## This program is distributed in the hope that it will be useful, but WITHOUT +## ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or +## FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more +## details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see <http://www.gnu.org/licenses/>;. +## You should have received a copy of the GNU General Public License along with +## this program; if not, see <http://www.gnu.org/licenses/>;. ## * texinfo * ## @deftypefn {Loadable Function} {[@var{fi},@var{vari}] = } optiminterp4(@var{x},@var{y},@var{z},@var{t},@var{f},@var{var},@var{lenx},@var{leny},@var{lenz},@var{lent},@var{m},@var{xi},@var{yi},@var{zi},@var{ti}) @@ 39,10 +40,8 @@ ## have a error variance of one. ## @end deftypefn ## Copyright (C) 2007 Aida AlveraAzcárate ## Author: Aida AlveraAzcárate <aalvera@...> ## Author: Alexander Barth <barth.alexander@...>  function [fi,vari] = optiminterp4(x,y,z,t,f,var,lenx,leny,lenz,lent,m,xi,yi,zi,ti) [fi,vari] = optiminterpn(x,y,z,t,f,var,lenx,leny,lenz,lent,m,xi,yi,zi,ti); + [fi,vari] = optiminterpn(x,y,z,t,f,var,lenx,leny,lenz,lent,m,xi,yi,zi,ti); + +endfunction Modified: trunk/octaveforge/main/optiminterp/inst/optiminterpn.m ===================================================================  trunk/octaveforge/main/optiminterp/inst/optiminterpn.m 20120330 09:48:55 UTC (rev 10109) +++ trunk/octaveforge/main/optiminterp/inst/optiminterpn.m 20120330 11:10:16 UTC (rev 10110) @@ 1,30 +1,30 @@ ## Copyright (C) 2008 Alexander Barth +## Copyright (C) 2008 Alexander Barth <barth.alexander@...> ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 2 of the License, or ## (at your option) any later version. +## This program is free software; you can redistribute it and/or modify it under +## the terms of the GNU General Public License as published by the Free Software +## Foundation; either version 3 of the License, or (at your option) any later +## version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. +## This program is distributed in the hope that it will be useful, but WITHOUT +## ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or +## FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more +## details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see <http://www.gnu.org/licenses/>;. +## You should have received a copy of the GNU General Public License along with +## this program; if not, see <http://www.gnu.org/licenses/>;. ## * texinfo * ## @deftypefn {Loadable Function} {[@var{fi},@var{vari}] = } optiminterpn(@var{x},@var{y},@var{...},@var{f},@var{var},@var{lenx},@var{leny},@var{...},@var{m},@var{xi},@var{yi},@var{...}) +## @deftypefn {Loadable Function} {[@var{fi},@var{vari}] = } optiminterpn(@var{x},@var{y},@dots{},@var{f},@var{var},@var{lenx},@var{leny},@dots{},@var{m},@var{xi},@var{yi},@dots{}) ## Performs a local nDoptimal interpolation (objective analysis). ## ## Every elements in @var{f} corresponds to a data point (observation) ## at location @var{x},@var{y},@var{...} with the error variance @var{var}. +## at location @var{x},@var{y},@dots{} with the error variance @var{var}. ## ## @var{lenx},@var{leny},@var{...} are correlation length in xdirection +## @var{lenx},@var{leny},@dots{} are correlation length in xdirection ## ydirection,... respectively. ## @var{m} represents the number of influential points. ## ## @var{xi},@var{yi},@var{...} are the data points where the field is +## @var{xi},@var{yi},@dots{} are the data points where the field is ## interpolated. @var{fi} is the interpolated field and @var{vari} is ## its error variance. ## @@ 37,11 +37,6 @@ ## have a error variance of one. ## @end deftypefn ## Copyright (C) 2008, Alexander Barth ## Author: Alexander Barth <barth.alexander@...>  # {[@var{fi},@var{vari}] = } optiminterpn(@var{x},@var{y},@var{...},@var{f},@var{var},@var{lenx},@var{leny},@var{len...},@var{m},@var{xi},@var{yi},@var{...})  function [fi,vari] = optiminterpn(varargin) if nargin < 6  mod(nargin3,3) ~= 0 Modified: trunk/octaveforge/main/optiminterp/inst/test_optiminterp.m ===================================================================  trunk/octaveforge/main/optiminterp/inst/test_optiminterp.m 20120330 09:48:55 UTC (rev 10109) +++ trunk/octaveforge/main/optiminterp/inst/test_optiminterp.m 20120330 11:10:16 UTC (rev 10110) @@ 1,3 +1,18 @@ +%% Copyright (C) 2006 Alexander Barth <barth.alexander@...> +%% +%% This program is free software; you can redistribute it and/or modify it under +%% the terms of the GNU General Public License as published by the Free Software +%% Foundation; either version 3 of the License, or (at your option) any later +%% version. +%% +%% This program is distributed in the hope that it will be useful, but WITHOUT +%% ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or +%% FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more +%% details. +%% +%% You should have received a copy of the GNU General Public License along with +%% this program; if not, see <http://www.gnu.org/licenses/>;. + % Tests 1D, 2D and 3D optimal interpolation. % All tests should pass; any error indicates that either % there is a bug in the optimal interpolation package or Modified: trunk/octaveforge/main/optiminterp/inst/test_optiminterp_err.m ===================================================================  trunk/octaveforge/main/optiminterp/inst/test_optiminterp_err.m 20120330 09:48:55 UTC (rev 10109) +++ trunk/octaveforge/main/optiminterp/inst/test_optiminterp_err.m 20120330 11:10:16 UTC (rev 10110) @@ 1,3 +1,18 @@ +%% Copyright (C) 2006 Alexander Barth <barth.alexander@...> +%% +%% This program is free software; you can redistribute it and/or modify it under +%% the terms of the GNU General Public License as published by the Free Software +%% Foundation; either version 3 of the License, or (at your option) any later +%% version. +%% +%% This program is distributed in the hope that it will be useful, but WITHOUT +%% ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or +%% FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more +%% details. +%% +%% You should have received a copy of the GNU General Public License along with +%% this program; if not, see <http://www.gnu.org/licenses/>;. + % Tests 2D optimal interpolation and compares result % (analysis and error field) to global OI solution Modified: trunk/octaveforge/main/optiminterp/inst/test_optiminterp_mult.m ===================================================================  trunk/octaveforge/main/optiminterp/inst/test_optiminterp_mult.m 20120330 09:48:55 UTC (rev 10109) +++ trunk/octaveforge/main/optiminterp/inst/test_optiminterp_mult.m 20120330 11:10:16 UTC (rev 10110) @@ 1,3 +1,18 @@ +%% Copyright (C) 2006 Alexander Barth <barth.alexander@...> +%% +%% This program is free software; you can redistribute it and/or modify it under +%% the terms of the GNU General Public License as published by the Free Software +%% Foundation; either version 3 of the License, or (at your option) any later +%% version. +%% +%% This program is distributed in the hope that it will be useful, but WITHOUT +%% ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or +%% FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more +%% details. +%% +%% You should have received a copy of the GNU General Public License along with +%% this program; if not, see <http://www.gnu.org/licenses/>;. + % Tests 1D, 2D and 3D optimal interpolation. % All tests should pass; any error indicates that either % there is a bug in the optimal interpolation package or Modified: trunk/octaveforge/main/optiminterp/src/example_optiminterp.F90 ===================================================================  trunk/octaveforge/main/optiminterp/src/example_optiminterp.F90 20120330 09:48:55 UTC (rev 10109) +++ trunk/octaveforge/main/optiminterp/src/example_optiminterp.F90 20120330 11:10:16 UTC (rev 10110) @@ 1,22 +1,19 @@ ! ! Example for using the ndimentional optimal interpolation Fortran module ! Copyright (C) 2005 Alexander Barth <barth.alexander@...> ! ! This program is free software; you can redistribute it and/or ! modify it under the terms of the GNU General Public License ! as published by the Free Software Foundation; either version 2 ! of the License, or (at your option) any later version. ! ! This program is distributed in the hope that it will be useful, ! but WITHOUT ANY WARRANTY; without even the implied warranty of ! MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ! GNU General Public License for more details. ! ! You should have received a copy of the GNU General Public License ! along with this program; if not, see <http://www.gnu.org/licenses/>;. ! +!! Copyright (C) 2005 Alexander Barth <barth.alexander@...> +!! +!! This program is free software; you can redistribute it and/or modify it under +!! the terms of the GNU General Public License as published by the Free Software +!! Foundation; either version 3 of the License, or (at your option) any later +!! version. +!! +!! This program is distributed in the hope that it will be useful, but WITHOUT +!! ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or +!! FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more +!! details. +!! +!! You should have received a copy of the GNU General Public License along with +!! this program; if not, see <http://www.gnu.org/licenses/>;. ! Author: Alexander Barth <barth.alexander@...> +!! Example for using the ndimentional optimal interpolation Fortran module program test_optiminterp use optimal_interpolation Modified: trunk/octaveforge/main/optiminterp/src/optimal_interpolation.F90 ===================================================================  trunk/octaveforge/main/optiminterp/src/optimal_interpolation.F90 20120330 09:48:55 UTC (rev 10109) +++ trunk/octaveforge/main/optiminterp/src/optimal_interpolation.F90 20120330 11:10:16 UTC (rev 10110) @@ 1,30 +1,23 @@ +!! Copyright (C) 2005 Alexander Barth <barth.alexander@...> +!! Copyright (C) 2006 David Saunders (NASA Ames Research Center) +!! Copyright (C) 2008 Gian Franco Marras (CINECA) <g.marras@...> +!! +!! This program is free software; you can redistribute it and/or modify it under +!! the terms of the GNU General Public License as published by the Free Software +!! Foundation; either version 3 of the License, or (at your option) any later +!! version. +!! +!! This program is distributed in the hope that it will be useful, but WITHOUT +!! ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or +!! FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more +!! details. +!! +!! You should have received a copy of the GNU General Public License along with +!! this program; if not, see <http://www.gnu.org/licenses/>;. ! Fortran 90 module for ndimensional optimal interpolation. ! Copyright (C) 2005 Alexander Barth <barth.alexander@...> ! ! This program is free software; you can redistribute it and/or ! modify it under the terms of the GNU General Public License ! as published by the Free Software Foundation; either version 2 ! of the License, or (at your option) any later version. ! ! This program is distributed in the hope that it will be useful, ! but WITHOUT ANY WARRANTY; without even the implied warranty of ! MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ! GNU General Public License for more details. ! ! You should have received a copy of the GNU General Public License ! along with this program; if not, see <http://www.gnu.org/licenses/>;. ! +!! Fortran 90 module for ndimensional optimal interpolation. +!! Dependencies: LAPACK (dsyev) ! Author: Alexander Barth <a.barth at ulg.ac.be> ! Dependencies: LAPACK (dsyev)  ! David Saunders (NASA Ames Research Center) ! optimizations and code cleanup  ! Gian Franco Marras (CINECA) <g.marras at cineca.it> ! fix OPENMP directive  #define DIAG_OBS_COVAR module optimal_interpolation ! working precision Modified: trunk/octaveforge/main/optiminterp/src/optiminterp.cc ===================================================================  trunk/octaveforge/main/optiminterp/src/optiminterp.cc 20120330 09:48:55 UTC (rev 10109) +++ trunk/octaveforge/main/optiminterp/src/optiminterp.cc 20120330 11:10:16 UTC (rev 10110) @@ 1,25 +1,20 @@ /*  ndimensional optimal interpolation  Copyright (C) 2005 Alexander Barth <barth.alexander@...> +// Copyright (C) 2005 Alexander Barth <barth.alexander@...> +// +// This program is free software; you can redistribute it and/or modify it under +// the terms of the GNU General Public License as published by the Free Software +// Foundation; either version 3 of the License, or (at your option) any later +// version. +// +// This program is distributed in the hope that it will be useful, but WITHOUT +// ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or +// FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more +// details. +// +// You should have received a copy of the GNU General Public License along with +// this program; if not, see <http://www.gnu.org/licenses/>;.  This program is free software; you can redistribute it and/or  modify it under the terms of the GNU General Public License  as published by the Free Software Foundation; either version 2  of the License, or (at your option) any later version. +// ndimensional optimal interpolation  This program is distributed in the hope that it will be useful,  but WITHOUT ANY WARRANTY; without even the implied warranty of  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the  GNU General Public License for more details.   You should have received a copy of the GNU General Public License  along with this program; If not, see <http://www.gnu.org/licenses/>;.    Author: Alexander Barth <barth.alexander@...> */   #include <octave/oct.h> #include "f77fcn.h" Modified: trunk/octaveforge/main/optiminterp/src/optiminterp_wrapper.F90 ===================================================================  trunk/octaveforge/main/optiminterp/src/optiminterp_wrapper.F90 20120330 09:48:55 UTC (rev 10109) +++ trunk/octaveforge/main/optiminterp/src/optiminterp_wrapper.F90 20120330 11:10:16 UTC (rev 10110) @@ 1,22 +1,19 @@ ! ! ndimentional optimal interpolation ! Copyright (C) 2005 Alexander Barth <barth.alexander@...> ! ! This program is free software; you can redistribute it and/or ! modify it under the terms of the GNU General Public License ! as published by the Free Software Foundation; either version 2 ! of the License, or (at your option) any later version. ! ! This program is distributed in the hope that it will be useful, ! but WITHOUT ANY WARRANTY; without even the implied warranty of ! MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ! GNU General Public License for more details. ! ! You should have received a copy of the GNU General Public License ! along with this program; if not, see <http://www.gnu.org/licenses/>;. ! +!! Copyright (C) 2005 Alexander Barth <barth.alexander@...> +!! +!! This program is free software; you can redistribute it and/or modify it under +!! the terms of the GNU General Public License as published by the Free Software +!! Foundation; either version 3 of the License, or (at your option) any later +!! version. +!! +!! This program is distributed in the hope that it will be useful, but WITHOUT +!! ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or +!! FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more +!! details. +!! +!! You should have received a copy of the GNU General Public License along with +!! this program; if not, see <http://www.gnu.org/licenses/>;. ! Author: Alexander Barth <barth.alexander@...> +!! ndimentional optimal interpolation subroutine optiminterpwrapper(n,nf,gn,on,nparam,ox,of,ovar, & param,m,gx,gf,gvar) This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. 
From: <cdf@us...>  20120330 09:49:02

Revision: 10109 http://octave.svn.sourceforge.net/octave/?rev=10109&view=rev Author: cdf Date: 20120330 09:48:55 +0000 (Fri, 30 Mar 2012) Log Message:  avoid compiler warning Modified Paths:  trunk/octaveforge/extra/nurbs/src/nrb_srf_basisfun__.cc trunk/octaveforge/extra/nurbs/src/nrb_srf_basisfun_der__.cc Modified: trunk/octaveforge/extra/nurbs/src/nrb_srf_basisfun__.cc ===================================================================  trunk/octaveforge/extra/nurbs/src/nrb_srf_basisfun__.cc 20120330 08:44:19 UTC (rev 10108) +++ trunk/octaveforge/extra/nurbs/src/nrb_srf_basisfun__.cc 20120330 09:48:55 UTC (rev 10109) @@ 34,10 +34,10 @@ const Cell knots = nrb.contents("knots")(0).cell_value(); const NDArray coefs = nrb.contents("coefs")(0).array_value();  octave_idx_type m = (nrb.contents("number")(0).vector_value())(0)  1; // m = size (nrb.coefs, 2) 1;  octave_idx_type n = (nrb.contents("number")(0).vector_value())(1)  1; // n = size (nrb.coefs, 3) 1;  octave_idx_type p = (nrb.contents("order")(0).vector_value())(0)  1; // p = nrb.order(1) 1;  octave_idx_type q = (nrb.contents("order")(0).vector_value())(1)  1; // q = nrb.order(2) 1; + octave_idx_type m = static_cast<octave_idx_type> ((nrb.contents("number")(0).vector_value())(0))  1; // m = size (nrb.coefs, 2) 1; + octave_idx_type n = static_cast<octave_idx_type> ((nrb.contents("number")(0).vector_value())(1))  1; // n = size (nrb.coefs, 3) 1; + octave_idx_type p = static_cast<octave_idx_type> ((nrb.contents("order")(0).vector_value())(0))  1; // p = nrb.order(1) 1; + octave_idx_type q = static_cast<octave_idx_type> ((nrb.contents("order")(0).vector_value())(1))  1; // q = nrb.order(2) 1; Array<idx_vector> idx(dim_vector (2, 1), idx_vector(':')); idx(0) = 0; @@ 95,15 +95,21 @@ for (octave_idx_type k(0); k < npt; k++) for (octave_idx_type ii(0); ii < p+1; ii++) for (octave_idx_type jj(0); jj < q+1; jj++)  denom(k) += NuIkuk(k, ii) * NvJkvk(k, jj) * w(Ik(k, ii), Jk(k, jj)); + denom(k) += NuIkuk(k, ii) * NvJkvk(k, jj) * + w(static_cast<octave_idx_type> (Ik(k, ii)), + static_cast<octave_idx_type> (Jk(k, jj))); for (octave_idx_type k(0); k < npt; k++) for (octave_idx_type ii(0); ii < p+1; ii++) for (octave_idx_type jj(0); jj < q+1; jj++) {  RIkJk(k, octave_idx_type(ii+(p+1)*jj)) = NuIkuk(k, ii)*NvJkvk(k, jj) * w(Ik(k, ii), Jk(k, jj))/denom(k);  indIkJk(k, octave_idx_type(ii+(p+1)*jj))= Ik(k, ii)+(m+1)*Jk(k, jj)+1; + + RIkJk(k, octave_idx_type(ii+(p+1)*jj)) = NuIkuk(k, ii) * NvJkvk(k, jj) * + w(static_cast<octave_idx_type> (Ik(k, ii)), static_cast<octave_idx_type> (Jk(k, jj))) + / denom(k); + + indIkJk(k, octave_idx_type(ii+(p+1)*jj))= Ik(k, ii) + (m+1) * Jk(k, jj) + 1; } // for k=1:npt Modified: trunk/octaveforge/extra/nurbs/src/nrb_srf_basisfun_der__.cc ===================================================================  trunk/octaveforge/extra/nurbs/src/nrb_srf_basisfun_der__.cc 20120330 08:44:19 UTC (rev 10108) +++ trunk/octaveforge/extra/nurbs/src/nrb_srf_basisfun_der__.cc 20120330 09:48:55 UTC (rev 10109) @@ 34,10 +34,10 @@ { const Cell knots = nrb.contents("knots")(0).cell_value(); const NDArray coefs = nrb.contents("coefs")(0).array_value();  octave_idx_type m = (nrb.contents("number")(0).vector_value())(0)  1; // m = size (nrb.coefs, 2) 1;  octave_idx_type n = (nrb.contents("number")(0).vector_value())(1)  1; // n = size (nrb.coefs, 3) 1;  octave_idx_type p = (nrb.contents("order")(0).vector_value())(0)  1; // p = nrb.order(1) 1;  octave_idx_type q = (nrb.contents("order")(0).vector_value())(1)  1; // q = nrb.order(2) 1; + octave_idx_type m = static_cast<octave_idx_type> ((nrb.contents("number")(0).vector_value())(0))  1; // m = size (nrb.coefs, 2) 1; + octave_idx_type n = static_cast<octave_idx_type> ((nrb.contents("number")(0).vector_value())(1))  1; // n = size (nrb.coefs, 3) 1; + octave_idx_type p = static_cast<octave_idx_type> ((nrb.contents("order")(0).vector_value())(0))  1; // p = nrb.order(1) 1; + octave_idx_type q = static_cast<octave_idx_type> ((nrb.contents("order")(0).vector_value())(1))  1; // q = nrb.order(2) 1; Array<idx_vector> idx(dim_vector (2, 1), idx_vector(':')); idx(0) = 0; @@ 111,14 +111,21 @@ for (octave_idx_type ii(0); ii < p+1; ii++) for (octave_idx_type jj(0); jj < q+1; jj++) {  Num(k, ii+jj*(p+1)) = NuIkuk(k, ii) * NvJkvk(k, jj) * w(Ik(k, ii), Jk(k, jj)); + Num(k, ii+jj*(p+1)) = NuIkuk(k, ii) * NvJkvk(k, jj) * + w(static_cast<octave_idx_type> (Ik(k, ii)), + static_cast<octave_idx_type> (Jk(k, jj))); Denom(k) += Num(k, ii+jj*(p+1));  Num_du(k, ii+jj*(p+1)) = NuIkukprime(k, 1, ii) * NvJkvk(k, jj) * w(Ik(k, ii), Jk(k, jj)); + Num_du(k, ii+jj*(p+1)) = NuIkukprime(k, 1, ii) * NvJkvk(k, jj) * + w(static_cast<octave_idx_type> (Ik(k, ii)), + static_cast<octave_idx_type> (Jk(k, jj))); Denom_du(k) += Num_du(k, ii+jj*(p+1));  Num_dv(k, ii+jj*(p+1)) = NuIkuk(k, ii) * NvJkvkprime(k, 1, jj) * w(Ik(k, ii), Jk(k, jj));  Denom_dv(k) += Num_dv(k, ii+jj*(p+1)); + Num_dv(k, ii+jj*(p+1)) = NuIkuk(k, ii) * NvJkvkprime(k, 1, jj) * + w(static_cast<octave_idx_type> (Ik(k, ii)), + static_cast<octave_idx_type> (Jk(k, jj))); + + Denom_dv(k) += Num_dv(k, ii + jj * (p+1)); } for (octave_idx_type k(0); k < npt; k++) This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. 
From: <schloegl@us...>  20120330 08:44:26

Revision: 10108 http://octave.svn.sourceforge.net/octave/?rev=10108&view=rev Author: schloegl Date: 20120330 08:44:19 +0000 (Fri, 30 Mar 2012) Log Message:  initial import of Martin Billinger's code Added Paths:  trunk/octaveforge/extra/tsa/src/kalman_maar.cpp trunk/octaveforge/extra/tsa/src/kalman_maar.h Added: trunk/octaveforge/extra/tsa/src/kalman_maar.cpp ===================================================================  trunk/octaveforge/extra/tsa/src/kalman_maar.cpp (rev 0) +++ trunk/octaveforge/extra/tsa/src/kalman_maar.cpp 20120330 08:44:19 UTC (rev 10108) @@ 0,0 +1,219 @@ +// Copyright by Martin Billinger + +// This program is free software; you can redistribute it and/or modify it under +// the terms of the GNU General Public License as published by the Free Software +// Foundation; either version 2 of the License, or (at your option) any later +// version. +// +// This program is distributed in the hope that it will be useful, but WITHOUT +// ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS +// FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. +// +// You should have received a copy of the GNU General Public License along with +// this program; if not, write to the Free Software Foundation, Inc., 59 Temple +// Place  Suite 330, Boston, MA 021111307, USA. + +#include "mex.h" +#include "memory.h" + +#ifndef WIN32 +#include "blas.h" +#include "lapack.h" +#endif + +#include "kalman_maar.h" + +// input to the matlab function. for convenience elements +// can be accessed by name as well as array element. +union mexin +{ + struct { + const mxArray *y, *p, *UC, *Kalman, *mode; + }; + const mxArray *list[5]; +}; + +// output of the matlab function. for convenience elements +// can be accessed by name as well as array element. +union mexout +{ + struct { + mxArray *x, *e, *Kalman; + }; + mxArray *list[3]; +}; + +struct mxKalman +{ + mxArray *G, *H, *Kp, *Q1, *Q2, *errCov, *x, *yr; + struct Kalman pointers; +}; + +// true when persistent variables are initialized +static bool initialized = false; + +// holds persistent variables used by the MVAAR algorithm +static Kalman_Helper *kh = NULL; + +// parameters +int M = 0, L = 0, p = 0; + +void initialize( ptrdiff_t M, ptrdiff_t p ) +{ + mexPrintf( "Initializing Persistent variables.\n" ); + kh = new Kalman_Helper( M, p ); + initialized = true; +} + +void cleanup( ) +{ + mexPrintf( "Destroying Persistent variables.\n" ); + delete kh; + kh = NULL; + initialized = false; +} + +void mexFunction( + int nlhs, mxArray *plhs[], // output + int nrhs, const mxArray *prhs[] ) // input +{ + union mexin in; + union mexout out; + struct mxKalman inKalman, outKalman; + + // some pointers for various uses + double *tmp1, *tmp2, *tmp3; + + int n; + double UC; + double *y, *err; + double mode; + + if( nrhs < 3 ) + mexErrMsgTxt( "Not enough input arguments" ); + + if( nrhs > 5 ) + mexErrMsgTxt( "Too many input arguments" ); + + for( n=0; n<nrhs; n++ ) + in.list[n] = prhs[n]; + + if( nrhs < 5 ) + mode = 7; + else + mode = *mxGetPr( in.mode ); + + y = mxGetPr( in.y ); + + // if any parameters is changed the persistent variables have to be + // initialized anew to accomodate for eventually changed memory requirements + if( ( p!=(int)mxGetPr(in.p)[0] )  ( M!=mxGetN(in.y) ) ) + if( initialized ) + cleanup( ); + + if( !initialized ) + { + p = (int)mxGetPr(in.p)[0]; + M = mxGetN( in.y ); + L = M*M*p; + initialize( M, p ); + mexAtExit( cleanup ); + } + + UC = mxGetPr( in.UC )[0]; + + // create output variables + { // (in C variables can only be declared et the beginning of a block) + const char *fieldnames[8] = { "G", "H", "Kp", "Q1", "Q2", "errCov", "x", "yr" }; + plhs[0] = mxCreateDoubleMatrix( 1, L, mxREAL ); // x + plhs[1] = mxCreateDoubleMatrix( 1, M, mxREAL ); // err + plhs[2] = mxCreateStructMatrix( 1, 1, 8, fieldnames ); // Kalman + } + + for( n=0; n<3; n++ ) + out.list[n] = plhs[n]; + + err = mxGetPr( out.e ); + + if( nrhs == 3 ) // no filterstate argument given. initialize filter + { + printf( "Initialising Kalman Filter\n" ); + outKalman.G = mxCreateDoubleMatrix( L, M, mxREAL ); + outKalman.H = mxCreateDoubleMatrix( M, L, mxREAL ); + outKalman.Kp = eye( L, 1.0 ); + outKalman.Q1 = eye( L, UC ); + outKalman.Q2 = eye( M, 1.0 ); + outKalman.errCov = eye( M, 1.0 ); + outKalman.x = mxCreateDoubleMatrix(L,1,mxREAL); + outKalman.yr = mxCreateDoubleMatrix(1,M*p,mxREAL); + + // Kalman.yr = [y(:)' zeros(1,M*(p1))]; + // err = y; + /*tmp1 = mxGetPr( in.y ); + tmp2 = mxGetPr( outKalman.yr ); + tmp3 = mxGetPr( out.e ); + for( n=0; n<M; n++ ) + { + *(tmp2++) = *(tmp1); + *(tmp3++) = *(tmp1++); + }*/ + } + else + { + // extract filterstate from input data + inKalman.G = mxGetField( in.Kalman, 0, "G" ); + inKalman.H = mxGetField( in.Kalman, 0, "H" ); + inKalman.Kp = mxGetField( in.Kalman, 0, "Kp" ); + inKalman.Q1 = mxGetField( in.Kalman, 0, "Q1" ); + inKalman.Q2 = mxGetField( in.Kalman, 0, "Q2" ); + inKalman.errCov = mxGetField( in.Kalman, 0, "errCov" ); + inKalman.x = mxGetField( in.Kalman, 0, "x" ); + inKalman.yr = mxGetField( in.Kalman, 0, "yr" ); + + // set pointers + inKalman.pointers.G = mxGetPr( inKalman.G ); + inKalman.pointers.H = mxGetPr( inKalman.H ); + inKalman.pointers.Kp = mxGetPr( inKalman.Kp ); + inKalman.pointers.Q1 = mxGetPr( inKalman.Q1 ); + inKalman.pointers.Q2 = mxGetPr( inKalman.Q2 ); + inKalman.pointers.errCov = mxGetPr( inKalman.errCov ); + inKalman.pointers.x = mxGetPr( inKalman.x ); + inKalman.pointers.yr = mxGetPr( inKalman.yr ); + + // initialize filterstate output + outKalman.G = mxCreateDoubleMatrix( L, M, mxREAL ); + outKalman.H = mxCreateDoubleMatrix( M, L, mxREAL ); + outKalman.Kp = mxCreateDoubleMatrix(L, L, mxREAL ); + outKalman.Q1 = mxCreateDoubleMatrix(L, L, mxREAL ); + outKalman.Q2 = mxCreateDoubleMatrix(M, M, mxREAL ); + outKalman.errCov = mxCreateDoubleMatrix(M, M, mxREAL ); + outKalman.x = mxCreateDoubleMatrix( L, 1, mxREAL ); + outKalman.yr = mxCreateDoubleMatrix(1,M*p,mxREAL ); + + // set pointers + outKalman.pointers.G = mxGetPr( outKalman.G ); + outKalman.pointers.H = mxGetPr( outKalman.H ); + outKalman.pointers.Kp = mxGetPr( outKalman.Kp ); + outKalman.pointers.Q1 = mxGetPr( outKalman.Q1 ); + outKalman.pointers.Q2 = mxGetPr( outKalman.Q2 ); + outKalman.pointers.errCov = mxGetPr( outKalman.errCov ); + outKalman.pointers.x = mxGetPr( outKalman.x ); + outKalman.pointers.yr = mxGetPr( outKalman.yr ); + + // filtering step + kalman_maar( err, y, UC, M, L, p, + &inKalman.pointers, &outKalman.pointers, kh, mode ); + } + + // x = Kalman.x' + memcpy( mxGetPr( out.x ), mxGetPr( outKalman.x ), L*sizeof(double) ); + + mxSetField( out.Kalman, 0, "G", outKalman.G ); + mxSetField( out.Kalman, 0, "H", outKalman.H ); + mxSetField( out.Kalman, 0, "Kp", outKalman.Kp ); + mxSetField( out.Kalman, 0, "Q1", outKalman.Q1 ); + mxSetField( out.Kalman, 0, "Q2", outKalman.Q2 ); + mxSetField( out.Kalman, 0, "errCov", outKalman.errCov ); + mxSetField( out.Kalman, 0, "x", outKalman.x ); + mxSetField( out.Kalman, 0, "yr", outKalman.yr ); +} Added: trunk/octaveforge/extra/tsa/src/kalman_maar.h ===================================================================  trunk/octaveforge/extra/tsa/src/kalman_maar.h (rev 0) +++ trunk/octaveforge/extra/tsa/src/kalman_maar.h 20120330 08:44:19 UTC (rev 10108) @@ 0,0 +1,403 @@ +// Copyright by Martin Billinger + +// This program is free software; you can redistribute it and/or modify it under +// the terms of the GNU General Public License as published by the Free Software +// Foundation; either version 2 of the License, or (at your option) any later +// version. +// +// This program is distributed in the hope that it will be useful, but WITHOUT +// ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS +// FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. +// +// You should have received a copy of the GNU General Public License along with +// this program; if not, write to the Free Software Foundation, Inc., 59 Temple +// Place  Suite 330, Boston, MA 021111307, USA. + +// struct Kalman +// holds all information to describe a +// kalman filter and it's current state +struct Kalman +{ + // Cstyle pointers to matrices and vectors that + // describe a kalman filter and it's current state + double *G, *H, *Kp, *Q1, *Q2, *errCov, *x, *yr; +}; + +// struct Kalman_Helper +// holds temporary variables that are +// used by the algorithm +struct Kalman_Helper +{ + Kalman_Helper( ptrdiff_t M, ptrdiff_t p ) + { + ptrdiff_t L = M*M*p; + ye = new double[M]; + ipiv = new ptrdiff_t[M]; + tmp = new double[M*M]; + KpH = new double[L*M]; + HKp = new double[M*L]; + HKpH = new double[M*M]; + K = new double[L*L]; + } + + ~Kalman_Helper( ) + { + delete[] ye; + delete[] ipiv; + delete[] tmp; + delete[] KpH; + delete[] HKp; + delete[] HKpH; + delete[] K; + } + + double *ye; + ptrdiff_t *ipiv; + double *tmp; + double *KpH; + double *HKp; + double *HKpH; + double *K; +}; + +// BLAS' and LAPACK's fortran functions need +// all their arguments to be passed by reference. +// Therefore we need constants that can be referenced. +double one = 1.0, zero = 0.0; +double minusone = 1.0; +ptrdiff_t inc = 1; +char *chn="N"; char *cht="T"; + +// Helper functions to create identity matrices +void deye( int N, double *i, double value ); +mxArray *eye( int N, double value ); + + +// Implementation of the mvaar algorithm +void kalman_maar( double *err, const double *y, + //double UC, int M, int L, int p, + double UC, ptrdiff_t M, ptrdiff_t L, ptrdiff_t p, + struct Kalman *inKalman, struct Kalman *outKalman, + struct Kalman_Helper *kh, int mode ) +{ + double traceK; + double *tmp1, *tmp2, *tmp3; + ptrdiff_t n,i,j, info, index; + + // % update Measurement Matrix + // Kalman.H = kron( eye(M), Kalman.yr ); + index = 0; + for( j=0; j<M; j++ ) { + for( i=0; i<M*p; i++ ) { + outKalman>H[index] = inKalman>yr[i]; + index += M; + } + index += 1; + } + + // % calculate prediction error + // ye = (Kalman.H*Kalman.x)'; + // err = y  ye + index = 0; + for( j=0; j<M; j++ ) { + kh>ye[j] = 0; + for( i=0; i<M*p; i++ ) + kh>ye[j] += inKalman>yr[i] * inKalman>x[index++]; + err[j] = y[j]  kh>ye[j]; + } + + + // % Adaptive Error covariance + // Kalman.errCov = (1UC)*Kalman.errCov + UC*(err'*err); + index = 0; + for( i=0; i<M; i++ ) + for( j=0; j<M; j++ ) { + outKalman>errCov[index] = (1UC)*inKalman>errCov[index] + UC * err[i] * err[j]; + index++; + } + + if( mode == 0 ) + { + // Kalman.Q2 = Kalman.Q2; % No update + memcpy( outKalman>Q2, inKalman>Q2, sizeof(double)*M*M ); + } + else + { + // % update Q2 using the prediction error + // % of the previous step (corresponds to BioSigs's eMode==4) + // Kalman.Q2 = Kalman.errCov; + memcpy( outKalman>Q2, inKalman>errCov, sizeof(double)*M*M ); + } + + // KpH = Kalman.Kp * Kalman.H'; + dgemm( chn, cht, &L, &M, &L, &one, inKalman>Kp, &L, + outKalman>H, &M, &zero, kh>KpH, &L ); + + // HKp = Kalman.H * Kalman.Kp; + dgemm( chn, chn, &M, &L, &L, &one, outKalman>H, &M, + inKalman>Kp, &L, &zero, kh>HKp, &M ); + + // HKpH = Kalman.H * KpH + dgemm( chn, chn, &M, &M, &L, &one, outKalman>H, &M, + kh>KpH, &L, &zero, kh>HKpH, &M ); + + + // % Kalman Gain + // Kalman.G = KpH * inv( HKpH + Kalman.Q2 ); + tmp1 = kh>HKpH; + tmp2 = outKalman>Q2; + for( n=0; n<M*M; n++ ) + *(tmp1++) += *(tmp2++); + memset( kh>tmp, 0, M*M*sizeof( double ) ); + deye( M, kh>tmp, 1.0 ); + dgesv( &M, &M, kh>HKpH, &M, kh>ipiv, + kh>tmp, &M, &info ); + dgemm( chn, chn, &L, &M, &M, &one, kh>KpH, &L, + kh>tmp, &M, &zero, outKalman>G, &L ); + + // % calculation of the aposteriori state + // % error covariance matrix + // K = Kalman.KpKalman.G*HKp; + tmp1 = kh>K; + tmp2 = inKalman>Kp; + for( n=0; n<L*L; n++ ) + *(tmp1++) = *(tmp2++); + dgemm( chn, chn, &L, &L, &M, &minusone, outKalman>G, + &L, kh>HKp, &M, &one, kh>K, &L ); + + + // % updating Q1 + if( mode == 0 ) + { + // Kalman.Q1 = Kalman.Q1; % no update + memcpy( outKalman>Q1, inKalman>Q1, sizeof(double)*L*L ); + } + else + { + // % corresponds to aMode==17 + // K = 0.5 * (K+K'); + // Kalman.Q1 = UC * Kalman.Kp; + + for( j=0; j<L; j++ ) + for( i=0; i<=j; i++ ) + { + size_t ij = i * L + j; + size_t ji = j * L + i; + kh>K[ij] = 0.5 * ( kh>K[ij] + kh>K[ji] ); + kh>K[ji] = kh>K[ij]; + } + + for( n=0; n<L*L; n++ ) + outKalman>Q1[n] = UC * inKalman>Kp[n]; + } + + // % apriori state error covariance matrix + // % for the next time step + // Kalman.Kp=K+Kalman.Q1; + tmp1 = outKalman>Kp; + tmp2 = kh>K; + tmp3 = outKalman>Q1; + for( n=0; n<L*L; n++ ) + *(tmp1++) = *(tmp2++) + *(tmp3++); + + // % current estimation of state x + // Kalman.x = Kalman.x + Kalman.G*err'; + tmp1 = outKalman>x; + tmp2 = inKalman>x; + for( n=0; n<L; n++ ) + *(tmp1++) = *(tmp2++); + dgemv( chn, &L, &M, &one, outKalman>G, &L, err, + &inc, &one, outKalman>x, &inc ); + + // % add new observation, drop oldest + // Kalman.yr = [y(:)' Kalman.yr(1:M*(p1))]; + tmp1 = outKalman>yr; + const double *tmpc = y; + for( n=0; n<M; n++ ) + *(tmp1++) = *(tmpc++); + tmp2 = inKalman>yr; + for( n=0; n<M*(p1); n++ ) + *(tmp1++) = *(tmp2++); +} + + +// Implementation of the mvaar algorithm, that uses only one state variable +void kalman_maar( double *err, const double *y, + //double UC, int M, int L, int p, + double UC, ptrdiff_t M, ptrdiff_t L, ptrdiff_t p, + struct Kalman *state, + struct Kalman_Helper *kh, int mode ) +{ + double traceK; + double *tmp1, *tmp2, *tmp3; + ptrdiff_t n,i,j, info, index; + + // % update Measurement Matrix + // Kalman.H = kron( eye(M), Kalman.yr ); + // this loop should be faster than calculating the kronecker tensor product. + index = 0; + for( j=0; j<M; j++ ) { + for( i=0; i<M*p; i++ ) { + state>H[index] = state>yr[i]; + index += M; + } + index += 1; + } + // % calculate prediction error + // ye = (Kalman.H*Kalman.x)'; + // err = y  ye + index = 0; + for( j=0; j<M; j++ ) { + kh>ye[j] = 0; + for( i=0; i<M*p; i++ ) + kh>ye[j] += state>yr[i] * state>x[index++]; + err[j] = y[j]  kh>ye[j]; + } + + // % update of Q2 using the prediction error + // of the previous step + // Kalman.Q2 = (1UC)*Kalman.Q2 + UC*err'*err; + index = 0; + for( i=0; i<M; i++ ) + for( j=0; j<M; j++ ) { + state>Q2[index] = (1UC)*state>Q2[index] + UC * err[i] * err[j]; + index++; + } + + // KpH = Kalman.Kp * Kalman.H'; + dgemm( chn, cht, &L, &M, &L, &one, state>Kp, &L, + state>H, &M, &zero, kh>KpH, &L ); + + // HKp = Kalman.H * Kalman.Kp; + dgemm( chn, chn, &M, &L, &L, &one, state>H, &M, + state>Kp, &L, &zero, kh>HKp, &M ); + + // HKpH = Kalman.H * KpH + dgemm( chn, chn, &M, &M, &L, &one, state>H, &M, + kh>KpH, &L, &zero, kh>HKpH, &M ); + + + // % Kalman Gain + // Kalman.G = KpH * inv( HKpH + Kalman.Q2 ); + tmp1 = kh>HKpH; + tmp2 = state>Q2; + for( n=0; n<M*M; n++ ) + *(tmp1++) += *(tmp2++); + memset( kh>tmp, 0, M*M*sizeof( double ) ); + deye( M, kh>tmp, 1.0 ); + dgesv( &M, &M, kh>HKpH, &M, kh>ipiv, + kh>tmp, &M, &info ); + dgemm( chn, chn, &L, &M, &M, &one, kh>KpH, &L, + kh>tmp, &M, &zero, state>G, &L ); + + // % calculation of the aposteriori state + // % error covariance matrix + // K = Kalman.KpKalman.G*HKp; + tmp1 = kh>K; + tmp2 = state>Kp; + for( n=0; n<L*L; n++ ) + *(tmp1++) = *(tmp2++); + dgemm( chn, chn, &L, &L, &M, &minusone, state>G, + &L, kh>HKp, &M, &one, kh>K, &L ); + + + // % updating Q1 + tmp1 = state>Q1; + if( mode == 0 ) + { + // no update + } + else if( mode == 1 ) + { + // Kalman.Q1=diag(diag(K)).*UC; + tmp2 = kh>K; + for( n=0; n<L*L; n++ ) + { + if( n%(L+1)==0 ) + { + *tmp1 = *tmp2 * UC; + tmp2 += L+1; + } + else + *tmp1 = 0; + tmp1++; + } + } + else if( mode == 2 ) + { + // %diagonal matrix containing UC + // upd = eye(L)/L*UC; + // Kalman.Q1=upd*trace(K); + tmp2 = kh>K; + traceK = *tmp2; + for( n=1; n<L; n++ ) + { + tmp2 += L+1; + traceK += *tmp2; + } + + for( n=0; n<L*L; n++ ) + { + if( n%(L+1)==0 ) + *tmp1 = traceK * UC / L; + else + *tmp1 = 0; + tmp1++; + } + + } + + + // % apriori state error covariance matrix + // % for the next time step + // Kalman.Kp=K+Kalman.Q1; + tmp1 = state>Kp; + tmp2 = kh>K; + tmp3 = state>Q1; + for( n=0; n<L*L; n++ ) + *(tmp1++) = *(tmp2++) + *(tmp3++); + + // % current estimation of state x + // Kalman.x = Kalman.x + Kalman.G*err'; + dgemv( chn, &L, &M, &one, state>G, &L, err, + &inc, &one, state>x, &inc ); + + // % add new observation, drop oldest + // Kalman.yr = [y(:)' Kalman.yr(1:M*(p1))]; + + tmp1 = state>yr + M*p1; + tmp2 = tmp1  M; + for( n=0; n<M*(p1); n++ ) + *(tmp1) = *(tmp2); + + tmp1 = state>yr; + const double *tmpc = y; + for( n=0; n<M; n++ ) + *(tmp1++) = *(tmpc++); +} + + + +// ============================ +// Implementation of helper functions +// ============================ + +mxArray *eye( int N, double value ) +{ + mxArray *I; + I = mxCreateDoubleMatrix( N, N, mxREAL ); + deye( N, mxGetPr( I ), value ); + return I; +} + +void deye( int N, double *i, double value ) +{ + int n; + double *p = i; + for( n=0; n<N; n++ ) + { + *p = value; + p = p + (N+1); + } +} + This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. 
From: <paramaniac@us...>  20120330 08:27:07

Revision: 10107 http://octave.svn.sourceforge.net/octave/?rev=10107&view=rev Author: paramaniac Date: 20120330 08:26:56 +0000 (Fri, 30 Mar 2012) Log Message:  quaternion: add missing ## * texinfo * Modified Paths:  trunk/octaveforge/main/quaternion/inst/qi.m trunk/octaveforge/main/quaternion/inst/qj.m trunk/octaveforge/main/quaternion/inst/qk.m Modified: trunk/octaveforge/main/quaternion/inst/qi.m ===================================================================  trunk/octaveforge/main/quaternion/inst/qi.m 20120330 01:03:40 UTC (rev 10106) +++ trunk/octaveforge/main/quaternion/inst/qi.m 20120330 08:26:56 UTC (rev 10107) @@ 13,6 +13,7 @@ ## You should have received a copy of the GNU General Public License ## along with this program. If not, see <http://www.gnu.org/licenses/>;. +## * texinfo * ## @deftypefn {Function File} {} qi ## Create xcomponent of a quaternion's vector part. ## Modified: trunk/octaveforge/main/quaternion/inst/qj.m ===================================================================  trunk/octaveforge/main/quaternion/inst/qj.m 20120330 01:03:40 UTC (rev 10106) +++ trunk/octaveforge/main/quaternion/inst/qj.m 20120330 08:26:56 UTC (rev 10107) @@ 13,6 +13,7 @@ ## You should have received a copy of the GNU General Public License ## along with this program. If not, see <http://www.gnu.org/licenses/>;. +## * texinfo * ## @deftypefn {Function File} {} qj ## Create ycomponent of a quaternion's vector part. ## Modified: trunk/octaveforge/main/quaternion/inst/qk.m ===================================================================  trunk/octaveforge/main/quaternion/inst/qk.m 20120330 01:03:40 UTC (rev 10106) +++ trunk/octaveforge/main/quaternion/inst/qk.m 20120330 08:26:56 UTC (rev 10107) @@ 13,6 +13,7 @@ ## You should have received a copy of the GNU General Public License ## along with this program. If not, see <http://www.gnu.org/licenses/>;. +## * texinfo * ## @deftypefn {Function File} {} qk ## Create zcomponent of a quaternion's vector part. ## This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. 
From: <carandraug@us...>  20120330 01:03:46

Revision: 10106 http://octave.svn.sourceforge.net/octave/?rev=10106&view=rev Author: carandraug Date: 20120330 01:03:40 +0000 (Fri, 30 Mar 2012) Log Message:  quaternion: write license in DESCRIPTINO in an easy to parse automatically format Modified Paths:  trunk/octaveforge/main/quaternion/DESCRIPTION trunk/octaveforge/main/strings/NEWS Modified: trunk/octaveforge/main/quaternion/DESCRIPTION ===================================================================  trunk/octaveforge/main/quaternion/DESCRIPTION 20120330 01:02:51 UTC (rev 10105) +++ trunk/octaveforge/main/quaternion/DESCRIPTION 20120330 01:03:40 UTC (rev 10106) @@ 7,5 +7,5 @@ Description: Overloaded operators for quaternions Depends: octave (>= 3.6.0) Autoload: yes License: GPL version 3 or later +License: GPLv3+ Url: http://octave.sf.net Modified: trunk/octaveforge/main/strings/NEWS ===================================================================  trunk/octaveforge/main/strings/NEWS 20120330 01:02:51 UTC (rev 10105) +++ trunk/octaveforge/main/strings/NEWS 20120330 01:03:40 UTC (rev 10106) @@ 6,8 +6,8 @@ strtrim  ** Package is no longer automatically loaded. + ** Package is no longer automatically loaded.  ** The function `cstrcmp' has been completely rewritten. It should + ** The function `cstrcmp' has been completely rewritten. It should perform faster and will accept arguments exactly the same way as Octave's core `strcmp'. This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. 
From: <carandraug@us...>  20120330 01:02:57

Revision: 10105 http://octave.svn.sourceforge.net/octave/?rev=10105&view=rev Author: carandraug Date: 20120330 01:02:51 +0000 (Fri, 30 Mar 2012) Log Message:  description: date of new release Modified Paths:  trunk/octaveforge/main/general/DESCRIPTION Modified: trunk/octaveforge/main/general/DESCRIPTION ===================================================================  trunk/octaveforge/main/general/DESCRIPTION 20120330 00:35:55 UTC (rev 10104) +++ trunk/octaveforge/main/general/DESCRIPTION 20120330 01:02:51 UTC (rev 10105) @@ 1,6 +1,6 @@ Name: general Version: 1.3.0 Date: 20100312 +Date: 20120330 Author: various authors Maintainer: OctaveForge community <octavedev@...> Title: General This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. 
From: <carandraug@us...>  20120330 00:36:02

Revision: 10104 http://octave.svn.sourceforge.net/octave/?rev=10104&view=rev Author: carandraug Date: 20120330 00:35:55 +0000 (Fri, 30 Mar 2012) Log Message:  general: new package release Modified Paths:  trunk/octaveforge/main/general/DESCRIPTION trunk/octaveforge/main/general/INDEX Modified: trunk/octaveforge/main/general/DESCRIPTION ===================================================================  trunk/octaveforge/main/general/DESCRIPTION 20120330 00:29:51 UTC (rev 10103) +++ trunk/octaveforge/main/general/DESCRIPTION 20120330 00:35:55 UTC (rev 10104) @@ 1,5 +1,5 @@ Name: general Version: 1.2.2 +Version: 1.3.0 Date: 20100312 Author: various authors Maintainer: OctaveForge community <octavedev@...> Modified: trunk/octaveforge/main/general/INDEX ===================================================================  trunk/octaveforge/main/general/INDEX 20120330 00:29:51 UTC (rev 10103) +++ trunk/octaveforge/main/general/INDEX 20120330 00:35:55 UTC (rev 10104) @@ 8,12 +8,12 @@ @dict/length @dict/struct Input check  @inputParser/inputParser @inputParser/addOptional @inputParser/addRequired @inputParser/addParamValue @inputParser/addSwitch @inputParser/createCopy + @inputParser/inputParser @inputParser/parse Parallel Computing pararrayfun @@ 26,8 +26,9 @@ mark_for_deletion packfields safeprod + SHA1 unpackfields unresamp2 unvech ztvals  SHA1 + __exit__ This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. 
From: <carandraug@us...>  20120330 00:29:57

Revision: 10103 http://octave.svn.sourceforge.net/octave/?rev=10103&view=rev Author: carandraug Date: 20120330 00:29:51 +0000 (Fri, 30 Mar 2012) Log Message:  general: update NEWS and INDEX Modified Paths:  trunk/octaveforge/main/general/INDEX trunk/octaveforge/main/general/NEWS Modified: trunk/octaveforge/main/general/INDEX ===================================================================  trunk/octaveforge/main/general/INDEX 20120330 00:08:36 UTC (rev 10102) +++ trunk/octaveforge/main/general/INDEX 20120330 00:29:51 UTC (rev 10103) @@ 1,4 +1,20 @@ general_html >> General purpose functions +general >> General purpose functions +Dictionaries + @dict/dict + @dict/get + @dict/has + @dict/isempty + @dict/join + @dict/length + @dict/struct +Input check + @inputParser/inputParser + @inputParser/addOptional + @inputParser/addRequired + @inputParser/addParamValue + @inputParser/addSwitch + @inputParser/createCopy + @inputParser/parse Parallel Computing pararrayfun parcellfun @@ 15,16 +31,3 @@ unvech ztvals SHA1 Dictionaries  @dict/dict  @dict/display  @dict/end  @dict/get  @dict/has  @dict/isempty  @dict/join  @dict/length  @dict/struct  @dict/subsasgn  @dict/subsref  Modified: trunk/octaveforge/main/general/NEWS ===================================================================  trunk/octaveforge/main/general/NEWS 20120330 00:08:36 UTC (rev 10102) +++ trunk/octaveforge/main/general/NEWS 20120330 00:29:51 UTC (rev 10103) @@ 4,6 +4,17 @@ ** The following functions are new: majle + ** The class `inputParser' class has been implemented with many methods. It + attempts to be as compatible with Matlab as possible. However, since + classdef is not yet implemented the syntax differs slightly. Unlike the + Matlab implementation, this functions return the object. For example: + + obj.method (arguments) # matlab implementation + obj = obj.method (arguments) # octave implementation + + The octave implementatino expands on the Matlab one as it has one more type + of API, see `help @inputParser/addSwitch'. + ** The function `unvech' accepts a new argument scale to calculate the upper triangular part of the matrix thus returning nonsymmetric matrix. This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. 
From: <carandraug@us...>  20120330 00:08:44

Revision: 10102 http://octave.svn.sourceforge.net/octave/?rev=10102&view=rev Author: carandraug Date: 20120330 00:08:36 +0000 (Fri, 30 Mar 2012) Log Message:  @inputParser/addSwitch: implemented addSwitch method Modified Paths:  trunk/octaveforge/main/general/inst/@inputParser/addOptional.m trunk/octaveforge/main/general/inst/@inputParser/addParamValue.m trunk/octaveforge/main/general/inst/@inputParser/addRequired.m trunk/octaveforge/main/general/inst/@inputParser/addSwitch.m trunk/octaveforge/main/general/inst/@inputParser/createCopy.m trunk/octaveforge/main/general/inst/@inputParser/inputParser.m trunk/octaveforge/main/general/inst/@inputParser/parse.m trunk/octaveforge/main/general/inst/@inputParser/subsref.m Modified: trunk/octaveforge/main/general/inst/@inputParser/addOptional.m ===================================================================  trunk/octaveforge/main/general/inst/@inputParser/addOptional.m 20120329 22:55:39 UTC (rev 10101) +++ trunk/octaveforge/main/general/inst/@inputParser/addOptional.m 20120330 00:08:36 UTC (rev 10102) @@ 34,7 +34,7 @@ ## @emph{Note}: if @command{ParamValue} arguments are also specified, all @command{Optional} ## arguments will have to be specified before. ## ## @seealso{inputParser, @@inputParser/addParamValue +## @seealso{inputParser, @@inputParser/addParamValue, @@inputParser/addSwitch, ## @@inputParser/addParamValue, @@inputParser/addRequired, @@inputParser/parse} ## @end deftypefn Modified: trunk/octaveforge/main/general/inst/@inputParser/addParamValue.m ===================================================================  trunk/octaveforge/main/general/inst/@inputParser/addParamValue.m 20120329 22:55:39 UTC (rev 10101) +++ trunk/octaveforge/main/general/inst/@inputParser/addParamValue.m 20120330 00:08:36 UTC (rev 10102) @@ 29,7 +29,7 @@ ## for the parameter with name @var{argname}. Alternatively, a function name ## can be used. ## ## @seealso{inputParser, @@inputParser/addOptional, +## @seealso{inputParser, @@inputParser/addOptional, @@inputParser/addSwitch, ## @@inputParser/addParamValue, @@inputParser/addRequired, @@inputParser/parse} ## @end deftypefn Modified: trunk/octaveforge/main/general/inst/@inputParser/addRequired.m ===================================================================  trunk/octaveforge/main/general/inst/@inputParser/addRequired.m 20120329 22:55:39 UTC (rev 10101) +++ trunk/octaveforge/main/general/inst/@inputParser/addRequired.m 20120330 00:08:36 UTC (rev 10102) @@ 37,7 +37,7 @@ ## it must be the first (see @command{@@inputParser}). ## ## @seealso{inputParser, @@inputParser/addOptional, @@inputParser/addParamValue ## @@inputParser/addParamValue, @@inputParser/parse} +## @@inputParser/addParamValue, @@inputParser/addSwitch, @@inputParser/parse} ## @end deftypefn function inPar = addRequired (inPar, name, val) Modified: trunk/octaveforge/main/general/inst/@inputParser/addSwitch.m ===================================================================  trunk/octaveforge/main/general/inst/@inputParser/addSwitch.m 20120329 22:55:39 UTC (rev 10101) +++ trunk/octaveforge/main/general/inst/@inputParser/addSwitch.m 20120330 00:08:36 UTC (rev 10102) @@ 1,4 +1,4 @@ ## Copyright (C) 2011 Carnë Draug <carandraug+dev@...> +## Copyright (C) 20112012 Carnë Draug <carandraug+dev@...> ## ## This program is free software; you can redistribute it and/or modify it under ## the terms of the GNU General Public License as published by the Free Software @@ 14,11 +14,35 @@ ## this program; if not, see <http://www.gnu.org/licenses/>;. ## * texinfo * ## @deftypefn {Function File} {@var{parser} =} addSwitch (@var{parser}, @var{argname}, @var{default}) ## @deftypefnx {Function File} {@var{parser} =} @var{parser}.addSwitch (@var{argname}, @var{default}) ## Not implemented yet +## @deftypefn {Function File} {@var{parser} =} addSwitch (@var{parser}, @var{argname}) +## @deftypefnx {Function File} {@var{parser} =} @var{parser}.addSwitch (@var{argname}) +## Add new switch type of argument to the object @var{parser} of inputParser class. +## +## This method belongs to the inputParser class and implements a switch +## arguments type of API. +## +## @var{argname} must be a string with the name of the new argument. Arguments +## of this type can be specified at the end, after @code{Required} and @code{Optional}, +## and mixed between the @code{ParamValue}. They default to false. If one of the +## arguments supplied is a string like @var{argname}, then after parsing the value +## of @var{parse}.Results.@...{argname} will be true. +## +## See @command{help @@inputParser} for examples. +## +## @seealso{inputParser, @@inputParser/addOptional, @@inputParser/addParamValue +## @@inputParser/addParamValue, @@inputParser/addRequired, @@inputParser/parse} ## @end deftypefn function inPar = addSwitch (inPar, name, def) +function inPar = addSwitch (inPar, name) + ## check @inputParser/subsref for the actual code + if (nargin == 2) + inPar = subsref (inPar, substruct( + '.' , 'addParamValue', + '()', {name} + )); + else + print_usage; + endif + endfunction Modified: trunk/octaveforge/main/general/inst/@inputParser/createCopy.m ===================================================================  trunk/octaveforge/main/general/inst/@inputParser/createCopy.m 20120329 22:55:39 UTC (rev 10101) +++ trunk/octaveforge/main/general/inst/@inputParser/createCopy.m 20120330 00:08:36 UTC (rev 10102) @@ 19,7 +19,7 @@ ## class. ## ## @seealso{inputParser, @@inputParser/addOptional, @@inputParser/addParamValue ## @@inputParser/addParamValue, @@inputParser/addRequired, +## @@inputParser/addParamValue, @@inputParser/addRequired, @@inputParser/addSwitch, ## @@inputParser/parse} ## @end deftypefn Modified: trunk/octaveforge/main/general/inst/@inputParser/inputParser.m ===================================================================  trunk/octaveforge/main/general/inst/@inputParser/inputParser.m 20120329 22:55:39 UTC (rev 10101) +++ trunk/octaveforge/main/general/inst/@inputParser/inputParser.m 20120330 00:08:36 UTC (rev 10102) @@ 1,4 +1,4 @@ ## Copyright (C) 2011 Carnë Draug <carandraug+dev@...> +## Copyright (C) 20112012 Carnë Draug <carandraug+dev@...> ## ## This program is free software; you can redistribute it and/or modify it under ## the terms of the GNU General Public License as published by the Free Software @@ 24,7 +24,7 @@ ## @item mandatory (see @command{@@inputParser/addRequired}); ## @item optional (see @command{@@inputParser/addOptional}); ## @item named (see @command{@@inputParser/addParamValue}); ## @item switch (not implemented yet). +## @item switch (see @command{@@inputParser/addSwitch}). ## @end enumerate ## ## After defining the function API with this methods, the supplied arguments can @@ 53,7 +53,10 @@ ## @deftypefnx {Class property} parser.KeepUnmatched = @var{boolean} ## Set whether an error should be given for nondefined arguments. Defaults to ## false. If set to true, the extra arguments can be accessed through ## @code{Unmatched} after the @code{parse} method. +## @code{Unmatched} after the @code{parse} method. Note that since @command{Switch} +## and @command{ParamValue} arguments can be mixed, it is not possible to know +## the unmatched type. If argument is found unmatched it is assumed to be of the +## @command{ParamValue} type and it is expected to be followed by a value. ## ## @deftypefnx {Class property} parser.StructExpand = @var{boolean} ## Set whether a structure can be passed to the function instead of parameter @@ 77,13 +80,16 @@ ## ## create two ParamValue type of arguments ## val_type = @@(x) ischar(x) && any(strcmp(x, @{"linear", "quadratic"@}); ## p = p.addParamValue ("type", "linear", @@val_type); ## val_verb = @@(x) ischar(x) && any(strcmp(x, @{"silent", "verbose", "debug"@}); ## p = p.addParamValue ("verbosity", "silent", @@val_verb)'; +## val_verb = @@(x) ischar(x) && any(strcmp(x, @{"low", "medium", "high"@}); +## p = p.addParamValue ("tolerance", "low", @@val_verb); ## +## ## create a switch type of argument +## p = p.addSwitch ("verbose"); +## ## p = p.parse (pack, path, mat, varargin@{:@}); ## ## ## the rest of the function can access the input by accessing p.Results ## ## for example, to access the value of verbosity, use p.Results.verbosity +## ## for example, to access the value of tolerance, use p.Results.tolerance ## endfunction ## ## check ("mech"); # valid, will use defaults for other arguments @@ 93,6 +99,10 @@ ## ## check ("mech", "~/dev", [0 1 0 0], "type", "linear"); # valid ## +## ## the following is also valid. Note how the Switch type of argument can be +## ## mixed into or before the ParamValue (but still after Optional) +## check ("mech", "~/dev", [0 1 0 0], "verbose", "tolerance", "high"); +## ## ## the following returns an error since not all optional arguments, `path' and ## ## `mat', were given before the named argument `type'. ## check ("mech", "~/dev", "type", "linear"); @@ 107,7 +117,8 @@ ## ## @emph{Note 2}: if both @command{Optional} and @command{ParamValue} arguments ## are mixed in a function API, the user will have to specify @emph{all} ## @command{Optional} arguments before the @command{ParamValue} arguments. +## @command{Optional} arguments before the @command{ParamValue} and +## @command{Switch}arguments. ## ## @seealso{@@inputParser/addOptional, @@inputParser/addSwitch, ## @@inputParser/addParamValue, @@inputParser/addRequired, @@ 128,6 +139,7 @@ inPar.ParamValue = struct; inPar.Optional = struct; inPar.Required = struct; + inPar.Switch = struct; ## this will be filled when the methodd parse is used and will be a struct whose ## fieldnames are the argnames that return their value Modified: trunk/octaveforge/main/general/inst/@inputParser/parse.m ===================================================================  trunk/octaveforge/main/general/inst/@inputParser/parse.m 20120329 22:55:39 UTC (rev 10101) +++ trunk/octaveforge/main/general/inst/@inputParser/parse.m 20120330 00:08:36 UTC (rev 10102) @@ 23,7 +23,7 @@ ## accessor. See @command{help inputParser} for a more complete description. ## ## @seealso{inputParser, @@inputParser/addOptional, @@inputParser/addParamValue ## @@inputParser/addParamValue, @@inputParser/addRequired} +## @@inputParser/addParamValue, @@inputParser/addRequired, @@inputParser/addSwitch} ## @end deftypefn function inPar = parse (inPar, varargin) Modified: trunk/octaveforge/main/general/inst/@inputParser/subsref.m ===================================================================  trunk/octaveforge/main/general/inst/@inputParser/subsref.m 20120329 22:55:39 UTC (rev 10101) +++ trunk/octaveforge/main/general/inst/@inputParser/subsref.m 20120330 00:08:36 UTC (rev 10102) @@ 1,4 +1,4 @@ ## Copyright (C) 2011 Carnë Draug <carandraug+dev@...> +## Copyright (C) 20112012 Carnë Draug <carandraug+dev@...> ## ## This program is free software; you can redistribute it and/or modify it under ## the terms of the GNU General Public License as published by the Free Software @@ 38,7 +38,7 @@ inPar = parse_args (inPar, idx); case 'Unmatched' case 'UsingDefaults'  case {'addOptional', 'addParamValue', 'addRequired'} + case {'addOptional', 'addParamValue', 'addRequired', 'addSwitch'} inPar = check_methods (inPar, idx); otherwise error ("invalid index for reference of class %s", class (inPar) ); @@ 109,39 +109,47 @@ inPar.Results.(name) = value; endfor  ## only ParamValue can be after Optional so their number must be even  if ( rem (numel (args), 2) )  error("%sodd number of Parameter/Values arguments", inPar.FunctionName);  endif  ## loop a maximum #times of the number of ParamValue, taking pairs of keys and ## values out 'args'. We no longer expect an order so we need the index in ## 'copy' to remove it from there. Once ran out of 'args', move their name ## into usingDefaults, place their default values into 'Results', and break  for i = 1 : numel (fieldnames (inPar.ParamValue)) + for i = 1 : (numel (fieldnames (inPar.ParamValue)) + numel (fieldnames (inPar.Switch))) if ( !numel (args) ) ## loops the number of times left in 'copy' since these are the last type for n = 1 : numel (inPar.copy) [name, inPar.copy] = pop (inPar.copy); inPar.UsingDefaults = push (inPar.UsingDefaults, name);  inPar.Results.(name) = inPar.ParamValue.(name).default; + if (isfield (inPar.ParamValue, name)) + inPar.Results.(name) = inPar.ParamValue.(name).default; + else + inPar.Results.(name) = inPar.Switch.(name).default; + endif endfor break endif  [key, args] = pop (args);  [value, args] = pop (args); + [key, args] = pop (args); if ( !ischar (key) )  error("%sParameter names must be strings", inPar.FunctionName); + error("%sParameter/Switch names must be strings", inPar.FunctionName); endif if (inPar.CaseSensitive) index = find( strcmp(inPar.copy, key)); else index = find( strcmpi(inPar.copy, key)); endif + ## we can't use isfield here to support case insensitive + if (any (strcmpi (fieldnames (inPar.Switch), key))) + value = true; + method = "Switch"; + else + ## then it must be a ParamValue, pop its value + [value, args] = pop (args); + method = "ParamValue"; + endif + ## index == 0 means no match so either return error or move them into 'Unmatched' if ( index != 0 ) [name, inPar.copy] = pop (inPar.copy, index);  if ( !feval (inPar.ParamValue.(name).validator, value) ) + if ( !feval (inPar.(method).(name).validator, value)) error("%sinvalid value for parameter '%s'", inPar.FunctionName, key); endif ## we use the name popped from 'copy' instead of the key from 'args' in case @@ 188,7 +196,7 @@ ## a validator is optional but that complicates handling all the parsing with ## few functions and conditions. If not specified @() true will always return ## true. Simply using true is not enough because if the argument is zero it  ## return false and it it's too large, takes up memory + ## return false and if it's too large, takes up memory switch method case {'addOptional', 'addParamValue'} if ( numel (args) == 1 ) @@ 208,6 +216,9 @@ print_usage(func); endif def = false; + case {'addSwitch'} + val = def_val; + def = false; otherwise error ("invalid index for reference of class %s", class (inPar) ); endswitch @@ 238,13 +249,14 @@ endif ## because the order arguments are specified are the order they are expected,  ## can't have ParamValue before Optional, and Optional before Required + ## can't have ParamValue/Switch before Optional, and Optional before Required n_optional = numel (fieldnames (inPar.Optional)); n_params = numel (fieldnames (inPar.ParamValue));  if ( strcmp (method, 'Required') && ( n_optional  n_params ) )  error ("Can't specify 'Required' arguments after Optional or ParamValue");  elseif ( strcmp (method, 'Optional') && n_params )  error ("Can't specify 'Required' arguments after Optional or ParamValue"); + n_switch = numel (fieldnames (inPar.Switch)); + if ( strcmp (method, 'Required') && ( n_optional  n_params  n_switch) ) + error ("Can't specify 'Required' arguments after Optional, ParamValue or Switch"); + elseif ( strcmp (method, 'Optional') && ( n_params  n_switch) ) + error ("Can't specify 'Optional' arguments after ParamValue or Switch"); endif ## even if CaseSensitive is turned on, we still shouldn't have two args with This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. 
From: <cdf@us...>  20120329 22:55:45

Revision: 10101 http://octave.svn.sourceforge.net/octave/?rev=10101&view=rev Author: cdf Date: 20120329 22:55:39 +0000 (Thu, 29 Mar 2012) Log Message:  help improvement Modified Paths:  trunk/octaveforge/extra/secs1d/DESCRIPTION Modified: trunk/octaveforge/extra/secs1d/DESCRIPTION ===================================================================  trunk/octaveforge/extra/secs1d/DESCRIPTION 20120329 22:54:47 UTC (rev 10100) +++ trunk/octaveforge/extra/secs1d/DESCRIPTION 20120329 22:55:39 UTC (rev 10101) @@ 1,6 +1,6 @@ Name: SECS1D Version: 0.0.9 Date: 20120325 +Date: 20120330 Author: Carlo de Falco Maintainer: Carlo de Falco Title: SEmi Conductor Simulator in 1D This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. 
From: <cdf@us...>  20120329 22:54:53

Revision: 10100 http://octave.svn.sourceforge.net/octave/?rev=10100&view=rev Author: cdf Date: 20120329 22:54:47 +0000 (Thu, 29 Mar 2012) Log Message:  help improvement Modified Paths:  trunk/octaveforge/extra/secs1d/inst/secs1d_dd_gummel_map.m trunk/octaveforge/extra/secs1d/inst/secs1d_dd_newton.m trunk/octaveforge/extra/secs1d/inst/secs1d_nlpoisson_newton.m Modified: trunk/octaveforge/extra/secs1d/inst/secs1d_dd_gummel_map.m ===================================================================  trunk/octaveforge/extra/secs1d/inst/secs1d_dd_gummel_map.m 20120329 20:57:24 UTC (rev 10099) +++ trunk/octaveforge/extra/secs1d/inst/secs1d_dd_gummel_map.m 20120329 22:54:47 UTC (rev 10100) @@ 16,6 +16,9 @@ %% You should have received a copy of the GNU General Public License %% along with SECS1D; If not, see <http://www.gnu.org/licenses/>;. +%% +%% Solve the scaled stationary bipolar DD equation system using Gummel algorithm. +%% %% [n, p, V, Fn, Fp, Jn, Jp, it, res] = secs1d_dd_gummel_map (x, D, Na, Nd, %% pin, nin, Vin, Fnin, %% Fpin, l2, er, u0n, @@ 25,9 +28,6 @@ %% Cn, Cp, an, ap, Ecritnin, Ecritpin, %% toll, maxit, ptoll, pmaxit) %% %% This function solves the scaled stationary bipolar DD %% equation system using Gummel algorithm %% %% input: %% x spatial grid %% D, Na, Nd doping profile Modified: trunk/octaveforge/extra/secs1d/inst/secs1d_dd_newton.m ===================================================================  trunk/octaveforge/extra/secs1d/inst/secs1d_dd_newton.m 20120329 20:57:24 UTC (rev 10099) +++ trunk/octaveforge/extra/secs1d/inst/secs1d_dd_newton.m 20120329 22:54:47 UTC (rev 10100) @@ 16,13 +16,13 @@ %% You should have received a copy of the GNU General Public License %% along with SECS1D; If not, see <http://www.gnu.org/licenses/>;. +%% Solve the scaled stationary bipolar DD equation system using Newton's method. +%% %% [n, p, V, Fn, Fp, Jn, Jp, it, res] = secs1d_dd_newton (x, D, Vin, nin, %% pin, l2, er, un, %% up, theta, tn, tp, %% Cn, Cp, toll, maxit) %% %% Solve the scaled stationary bipolar DD equation system using Newton's method %% %% input: %% x spatial grid %% D doping profile Modified: trunk/octaveforge/extra/secs1d/inst/secs1d_nlpoisson_newton.m ===================================================================  trunk/octaveforge/extra/secs1d/inst/secs1d_nlpoisson_newton.m 20120329 20:57:24 UTC (rev 10099) +++ trunk/octaveforge/extra/secs1d/inst/secs1d_nlpoisson_newton.m 20120329 22:54:47 UTC (rev 10100) @@ 16,6 +16,8 @@ %% You should have received a copy of the GNU General Public License %% along with SECS1D; If not, see <http://www.gnu.org/licenses/>;. +%% Solve the nonlinear Poisson problem using Newton's algorithm. +%% %% [V, n, p, res, niter] = secs1d_nlpoisson_newton (x, sinodes, Vin, nin, pin, %% Fnin, Fpin, D, l2, er, toll, maxit) %% This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. 