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Re: [OctDev] openmpi_ext 1.1.0
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From: Sukanta B. <suk...@gm...> - 2012-08-30 17:05:03
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Hi Carlo,
Here is the output:
octave:5> pkg install -verbose openmpi_ext-1.1.0.tar.gz
mkdir (/tmp/oct-8OOYmQ)
untar (openmpi_ext-1.1.0.tar.gz, /tmp/oct-8OOYmQ)
make: Entering directory `/tmp/oct-8OOYmQ/openmpi_ext/src'
mkoctfile -I/usr/lib/openmpi/include
-I/usr/lib/openmpi/include/openmpi -lpthread -L/usr/lib/openmpi/lib
-lmpi_cxx -lmpi -lopen-rte -lopen-pal -ldl -Wl,--export-dynamic -lnsl
-lutil -lm -ldl MPI_Init.cc
mkoctfile -I/usr/lib/openmpi/include
-I/usr/lib/openmpi/include/openmpi -lpthread -L/usr/lib/openmpi/lib
-lmpi_cxx -lmpi -lopen-rte -lopen-pal -ldl -Wl,--export-dynamic -lnsl
-lutil -lm -ldl MPI_Initialized.cc
mkoctfile -I/usr/lib/openmpi/include
-I/usr/lib/openmpi/include/openmpi -lpthread -L/usr/lib/openmpi/lib
-lmpi_cxx -lmpi -lopen-rte -lopen-pal -ldl -Wl,--export-dynamic -lnsl
-lutil -lm -ldl MPI_Comm_rank.cc
mkoctfile -I/usr/lib/openmpi/include
-I/usr/lib/openmpi/include/openmpi -lpthread -L/usr/lib/openmpi/lib
-lmpi_cxx -lmpi -lopen-rte -lopen-pal -ldl -Wl,--export-dynamic -lnsl
-lutil -lm -ldl MPI_Comm_size.cc
mkoctfile -I/usr/lib/openmpi/include
-I/usr/lib/openmpi/include/openmpi -lpthread -L/usr/lib/openmpi/lib
-lmpi_cxx -lmpi -lopen-rte -lopen-pal -ldl -Wl,--export-dynamic -lnsl
-lutil -lm -ldl MPI_Finalize.cc
mkoctfile -I/usr/lib/openmpi/include
-I/usr/lib/openmpi/include/openmpi -lpthread -L/usr/lib/openmpi/lib
-lmpi_cxx -lmpi -lopen-rte -lopen-pal -ldl -Wl,--export-dynamic -lnsl
-lutil -lm -ldl MPI_Finalized.cc
mkoctfile -I/usr/lib/openmpi/include
-I/usr/lib/openmpi/include/openmpi -lpthread -L/usr/lib/openmpi/lib
-lmpi_cxx -lmpi -lopen-rte -lopen-pal -ldl -Wl,--export-dynamic -lnsl
-lutil -lm -ldl MPI_Send.cc
mkoctfile -I/usr/lib/openmpi/include
-I/usr/lib/openmpi/include/openmpi -lpthread -L/usr/lib/openmpi/lib
-lmpi_cxx -lmpi -lopen-rte -lopen-pal -ldl -Wl,--export-dynamic -lnsl
-lutil -lm -ldl MPI_Recv.cc
mkoctfile -I/usr/lib/openmpi/include
-I/usr/lib/openmpi/include/openmpi -lpthread -L/usr/lib/openmpi/lib
-lmpi_cxx -lmpi -lopen-rte -lopen-pal -ldl -Wl,--export-dynamic -lnsl
-lutil -lm -ldl MPI_Iprobe.cc
mkoctfile -I/usr/lib/openmpi/include
-I/usr/lib/openmpi/include/openmpi -lpthread -L/usr/lib/openmpi/lib
-lmpi_cxx -lmpi -lopen-rte -lopen-pal -ldl -Wl,--export-dynamic -lnsl
-lutil -lm -ldl MPI_Probe.cc
mkoctfile -I/usr/lib/openmpi/include
-I/usr/lib/openmpi/include/openmpi -lpthread -L/usr/lib/openmpi/lib
-lmpi_cxx -lmpi -lopen-rte -lopen-pal -ldl -Wl,--export-dynamic -lnsl
-lutil -lm -ldl MPI_Barrier.cc
mkoctfile -I/usr/lib/openmpi/include
-I/usr/lib/openmpi/include/openmpi -lpthread -L/usr/lib/openmpi/lib
-lmpi_cxx -lmpi -lopen-rte -lopen-pal -ldl -Wl,--export-dynamic -lnsl
-lutil -lm -ldl MPI_Comm_Load.cc
mkoctfile -I/usr/lib/openmpi/include
-I/usr/lib/openmpi/include/openmpi -lpthread -L/usr/lib/openmpi/lib
-lmpi_cxx -lmpi -lopen-rte -lopen-pal -ldl -Wl,--export-dynamic -lnsl
-lutil -lm -ldl MPI_Comm_Test.cc
mkoctfile -I/usr/lib/openmpi/include
-I/usr/lib/openmpi/include/openmpi -lpthread -L/usr/lib/openmpi/lib
-lmpi_cxx -lmpi -lopen-rte -lopen-pal -ldl -Wl,--export-dynamic -lnsl
-lutil -lm -ldl MPI_Get_processor_name.cc
make: Leaving directory `/tmp/oct-8OOYmQ/openmpi_ext/src'
copyfile /tmp/oct-8OOYmQ/openmpi_ext/src/MPI_Barrier.oct
/tmp/oct-8OOYmQ/openmpi_ext/src/MPI_Comm_Load.oct
/tmp/oct-8OOYmQ/openmpi_ext/src/MPI_Comm_Test.oct
/tmp/oct-8OOYmQ/openmpi_ext/src/MPI_Comm_rank.oct
/tmp/oct-8OOYmQ/openmpi_ext/src/MPI_Comm_size.oct
/tmp/oct-8OOYmQ/openmpi_ext/src/MPI_Finalize.oct
/tmp/oct-8OOYmQ/openmpi_ext/src/MPI_Finalized.oct
/tmp/oct-8OOYmQ/openmpi_ext/src/MPI_Get_processor_name.oct
/tmp/oct-8OOYmQ/openmpi_ext/src/MPI_Init.oct
/tmp/oct-8OOYmQ/openmpi_ext/src/MPI_Initialized.oct
/tmp/oct-8OOYmQ/openmpi_ext/src/MPI_Iprobe.oct
/tmp/oct-8OOYmQ/openmpi_ext/src/MPI_Probe.oct
/tmp/oct-8OOYmQ/openmpi_ext/src/MPI_Recv.oct
/tmp/oct-8OOYmQ/openmpi_ext/src/MPI_Send.oct
/tmp/oct-8OOYmQ/openmpi_ext/inst/x86_64-pc-linux-gnu-api-v37
If I use "ver", openmpi_ext shows up without a "*" next to it. I
believe that signals improper installation.
octave:6> ver
----------------------------------------------------------------------
GNU Octave Version 3.2.4
GNU Octave License: GNU General Public License
Operating System: Linux 3.2.0-29-generic #46-Ubuntu SMP Fri Jul 27
17:03:23 UTC 2012 x86_64
----------------------------------------------------------------------
Package Name | Version | Installation directory
-------------------+---------+-----------------------
benchmark | 1.1.1 | /usr/share/octave/packages/3.2/benchmark-1.1.1
communications *| 1.0.10 |
/usr/share/octave/packages/3.2/communications-1.0.10
control *| 1.0.11 | /usr/share/octave/packages/3.2/control-1.0.11
data-smoothing *| 1.2.3 |
/usr/share/octave/packages/3.2/data-smoothing-1.2.3
econometrics *| 1.0.8 | /usr/share/octave/packages/3.2/econometrics-1.0.8
financial *| 0.3.2 | /usr/share/octave/packages/3.2/financial-0.3.2
ga *| 0.9.8 | /usr/share/octave/packages/3.2/ga-0.9.8
general *| 1.2.2 | /usr/share/octave/packages/3.2/general-1.2.2
gsl *| 1.0.8 | /usr/share/octave/packages/3.2/gsl-1.0.8
image *| 1.0.14 | /usr/share/octave/packages/3.2/image-1.0.14
io *| 1.0.14 | /usr/share/octave/packages/3.2/io-1.0.14
java *| 1.2.8 | /usr/share/octave/packages/3.2/java-1.2.8
linear-algebra *| 2.1.0 |
/usr/share/octave/packages/3.2/linear-algebra-2.1.0
mapping *| 1.0.7 | /usr/share/octave/packages/3.2/mapping-1.0.7
miscellaneous *| 1.0.11 |
/usr/share/octave/packages/3.2/miscellaneous-1.0.11
missing-functions *| 1.0.2 |
/usr/share/octave/packages/3.2/missing-functions-1.0.2
nan *| 2.4.4 | /usr/share/octave/packages/3.2/nan-2.4.4
nnet *| 0.1.13 | /usr/share/octave/packages/3.2/nnet-0.1.13
octcdf *| 1.0.13 | /usr/share/octave/packages/3.2/octcdf-1.0.13
octgpr *| 1.2.0 | /usr/share/octave/packages/3.2/octgpr-1.2.0
odepkg *| 0.6.12 | /usr/share/octave/packages/3.2/odepkg-0.6.12
openmpi_ext | 1.1.0 | /usr/share/octave/packages/3.2/openmpi_ext-1.1.0
optim *| 1.0.17 | /usr/share/octave/packages/3.2/optim-1.0.17
optiminterp *| 0.3.3 | /usr/share/octave/packages/3.2/optiminterp-0.3.3
parallel *| 2.0.5 | /usr/share/octave/packages/3.2/parallel-2.0.5
plot *| 1.0.8 | /usr/share/octave/packages/3.2/plot-1.0.8
signal *| 1.0.11 | /usr/share/octave/packages/3.2/signal-1.0.11
specfun *| 1.0.9 | /usr/share/octave/packages/3.2/specfun-1.0.9
splines *| 1.0.7 | /usr/share/octave/packages/3.2/splines-1.0.7
statistics *| 1.0.10 | /usr/share/octave/packages/3.2/statistics-1.0.10
strings *| 1.0.7 | /usr/share/octave/packages/3.2/strings-1.0.7
struct *| 1.0.9 | /usr/share/octave/packages/3.2/struct-1.0.9
symbolic *| 1.0.9 | /usr/share/octave/packages/3.2/symbolic-1.0.9
time *| 1.0.9 | /usr/share/octave/packages/3.2/time-1.0.9
tsa *| 4.1.0 | /usr/share/octave/packages/3.2/tsa-4.1.0
None of the MPI commands are found.
octave:7> help MPI_Init
error: help: `MPI_Init' not found
octave:7> help MPI_Send
error: help: `MPI_Send' not found
Best regards,
Sukanta
On Thu, Aug 30, 2012 at 12:57 PM, c. <car...@gm...> wrote:
> Hi,
> please keep the list in CC as others may find this discussion useful
>
> On 30 Aug 2012, at 18:45, Sukanta Basu wrote:
>
>> Hi Carlo,
>>
>> I tried to install the new openmpi_ext version.
> thanks for trying it!
>
>> However, it won't compile properly on Octave 3.2.4.
> I did not knowingly introduce anything that would make this release incompatible with
> Octave 3.2.4 what exactly is the problem you get in installing?
> It would be helpful if you could try installing with the "-verbose" option enabled
>
> pkg install -verbose openmpi_ext-1.1.0.tar.gz
>
> and send me the output
>
>> Since Ubuntu 12.04 does not yet have
>> Octave 3.6 (unofficial version does exist), I could not test it on
>> 3.6.
>>
>> The next release of Ubuntu will happen in October and will include
>> 3.6.2. I will probably wait for this release.
> You don't need to wait for a new Ubuntu release to get newer binaries for Ubuntu
> you could just use one of the links listed here:
>
> http://wiki.octave.org/Octave_for_GNU/Linux#Unofficial_binaries
>
>> Best regards,
>> Sukanta
> c.
>
--
Sukanta Basu
Associate Professor
North Carolina State University
http://www4.ncsu.edu/~sbasu5/
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