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[Octave-cvsupdate] SF.net SVN: octave:[10081] trunk/octave-forge/main/system-identification/ devel/tisean
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From: <jpi...@us...> - 2012-03-28 13:55:23
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Revision: 10081
http://octave.svn.sourceforge.net/octave/?rev=10081&view=rev
Author: jpicarbajal
Date: 2012-03-28 13:55:12 +0000 (Wed, 28 Mar 2012)
Log Message:
-----------
system-identification: removing big collection and adding only under development
Added Paths:
-----------
trunk/octave-forge/main/system-identification/devel/tisean/src/
trunk/octave-forge/main/system-identification/devel/tisean/src/delay.c
trunk/octave-forge/main/system-identification/devel/tisean/src/tisean_functions.cc
Removed Paths:
-------------
trunk/octave-forge/main/system-identification/devel/tisean/source_c/
trunk/octave-forge/main/system-identification/devel/tisean/source_f/
Added: trunk/octave-forge/main/system-identification/devel/tisean/src/delay.c
===================================================================
--- trunk/octave-forge/main/system-identification/devel/tisean/src/delay.c (rev 0)
+++ trunk/octave-forge/main/system-identification/devel/tisean/src/delay.c 2012-03-28 13:55:12 UTC (rev 10081)
@@ -0,0 +1,331 @@
+/*
+ * This file is part of TISEAN
+ *
+ * Copyright (c) 1998-2007 Rainer Hegger, Holger Kantz, Thomas Schreiber
+ *
+ * TISEAN is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation; either version 2 of the License, or
+ * (at your option) any later version.
+ *
+ * TISEAN is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with TISEAN; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
+ */
+/*Author: Rainer Hegger. Last modified (rewritten in C) Aug 22, 2004*/
+#include <stdio.h>
+#include <stdlib.h>
+#include <string.h>
+#include <limits.h>
+#include <ctype.h>
+#include "routines/tsa.h"
+
+#define WID_STR "Produces delay vectors"
+
+
+unsigned long length=ULONG_MAX;
+unsigned long exclude=0;
+unsigned int verbosity=0xff;
+int delay=1;
+unsigned int indim=1,embdim=2;
+char *column=NULL,*format=NULL,*multidelay=NULL;
+char *outfile=NULL;
+char *infile=NULL;
+char dimset=0,formatset=0,embset=0,mdelayset=0,delayset=0;
+char stdo=1;
+
+double **series;
+unsigned int *formatlist,*delaylist;
+
+void show_options(char *progname)
+{
+ what_i_do(progname,WID_STR);
+ fprintf(stderr,"\nUsage: %s [options]\n",progname);
+ fprintf(stderr,"Options:\n");
+ fprintf(stderr,"Everything not being a valid option will be interpreted as a"
+ " possible datafile.\nIf no datafile is given stdin is read."
+ " Just - also means stdin\n");
+ fprintf(stderr,"\t-l # of data [default: whole file]\n");
+ fprintf(stderr,"\t-x # of rows to ignore [default: 0]\n");
+ fprintf(stderr,"\t-M num. of columns to read [default: %u]\n",indim);
+ fprintf(stderr,"\t-c columns to read [default: 1,...,M]\n");
+ fprintf(stderr,"\t-m dimension [default: 2]\n");
+ fprintf(stderr,"\t-F format of the delay vector (see man page)\n");
+ fprintf(stderr,"\t-d delay [default: 1]\n");
+ fprintf(stderr,"\t-D multi delay list (see man page)\n");
+ fprintf(stderr,"\t-V verbosity level [default: 1]\n\t\t"
+ "0='only panic messages'\n\t\t"
+ "1='+ input/output messages'\n");
+ fprintf(stderr,"\t-o output file [default: 'datafile'.del, "
+ "without -o: stdout]\n");
+ fprintf(stderr,"\t-h show these options\n");
+ exit(0);
+}
+
+void scan_options(int n,char **str)
+{
+ char *out;
+
+ if ((out=check_option(str,n,'l','u')) != NULL)
+ sscanf(out,"%lu",&length);
+ if ((out=check_option(str,n,'x','u')) != NULL)
+ sscanf(out,"%lu",&exclude);
+ if ((out=check_option(str,n,'c','s')) != NULL)
+ column=out;
+ if ((out=check_option(str,n,'M','u')) != NULL) {
+ sscanf(out,"%u",&indim);
+ dimset=1;
+ }
+ if ((out=check_option(str,n,'F','s')) != NULL) {
+ format=out;
+ formatset=1;
+ }
+ if ((out=check_option(str,n,'m','u')) != NULL) {
+ sscanf(out,"%u",&embdim);
+ embset=1;
+ }
+ if ((out=check_option(str,n,'d','u')) != NULL) {
+ sscanf(out,"%u",&delay);
+ delayset=1;
+ }
+ if ((out=check_option(str,n,'D','s')) != NULL) {
+ multidelay=out;
+ mdelayset=1;
+ }
+ if ((out=check_option(str,n,'V','u')) != NULL)
+ sscanf(out,"%u",&verbosity);
+ if ((out=check_option(str,n,'o','o')) != NULL) {
+ stdo=0;
+ if (strlen(out) > 0)
+ outfile=out;
+ }
+}
+
+void create_format_list(void)
+{
+ unsigned int i=0,num=0,sum=0;
+
+ while (format[i]) {
+ if (!(isdigit(format[i])) && !(format[i] == ',')) {
+ fprintf(stderr,"Wrong format of -F parameter. Exiting!\n");
+ exit(DELAY_WRONG_FORMAT_F);
+ }
+ i++;
+ }
+
+ i=0;
+ while (format[i]) {
+ if (format[i++] == ',')
+ num++;
+ }
+
+ check_alloc(formatlist=(unsigned int*)malloc(sizeof(int)*(num+1)));
+ for (i=0;i<=num;i++) {
+ sscanf(format,"%d",&formatlist[i]);
+ if (i<num) {
+ while ((*format) != ',')
+ format++;
+ }
+ format++;
+ }
+
+ if (dimset && ((num+1) != indim)) {
+ fprintf(stderr,"Number of dimensions in -F is not equal to -M. Exiting!\n");
+ exit(DELAY_DIM_NOT_EQUAL_F_M);
+ }
+
+ for (i=0;i<=num;i++)
+ sum += formatlist[i];
+ if (embset && (sum != embdim)) {
+ fprintf(stderr,"The dimensions given in -m and -F are not equal!"
+ " Exiting\n");
+ exit(DELAY_DIM_NOT_EQUAL_F_m);
+ }
+ if (!dimset)
+ indim=num+1;
+ if (!embset)
+ embdim=sum;
+}
+
+void create_delay_list(void)
+{
+ unsigned int i=0,num=0;
+
+ while (multidelay[i]) {
+ if (!(isdigit(multidelay[i])) && !(multidelay[i] == ',')) {
+ fprintf(stderr,"Wrong format of -D parameter. Exiting!\n");
+ exit(DELAY_WRONG_FORMAT_D);
+ }
+ i++;
+ }
+
+ i=0;
+ while (multidelay[i]) {
+ if (multidelay[i++] == ',')
+ num++;
+ }
+
+ check_alloc(delaylist=(unsigned int*)malloc(sizeof(int)*(num+1)));
+ for (i=0;i<=num;i++) {
+ sscanf(multidelay,"%d",&delaylist[i]);
+ if (i<num) {
+ while ((*multidelay) != ',')
+ multidelay++;
+ }
+ multidelay++;
+ }
+
+ if ((num+1) != (embdim-indim)) {
+ fprintf(stderr,"Wrong number of delays. See man page. Exiting!\n");
+ exit(DELAY_WRONG_NUM_D);
+ }
+}
+
+int main(int argc,char **argv)
+{
+ char stin=0;
+ unsigned long i;
+ int j,k;
+ unsigned int alldim,maxemb,emb,rundel,delsum,runmdel;
+ unsigned int *inddelay;
+ FILE *fout;
+
+ if (scan_help(argc,argv))
+ show_options(argv[0]);
+
+ scan_options(argc,argv);
+#ifndef OMIT_WHAT_I_DO
+ if (verbosity&VER_INPUT)
+ what_i_do(argv[0],WID_STR);
+#endif
+
+
+ infile=search_datafile(argc,argv,NULL,verbosity);
+ if (infile == NULL)
+ stin=1;
+
+ if (outfile == NULL) {
+ if (!stin) {
+ check_alloc(outfile=(char*)calloc(strlen(infile)+5,1));
+ strcpy(outfile,infile);
+ strcat(outfile,".del");
+ }
+ else {
+ check_alloc(outfile=(char*)calloc(10,1));
+ strcpy(outfile,"stdin.del");
+ }
+ }
+ if (!stdo)
+ test_outfile(outfile);
+
+ if (delayset && mdelayset) {
+ fprintf(stderr,"-d and -D can't be used simultaneously. Exiting!\n");
+ exit(DELAY_INCONS_d_D);
+ }
+
+ if (delay < 1) {
+ fprintf(stderr,"Delay has to be larger than 0. Exiting!\n");
+ exit(DELAY_SMALL_ZERO);
+ }
+
+ if (!formatset && (embdim%indim)) {
+ fprintf(stderr,"Inconsistent -m and -M. Please set -F\n");
+ exit(DELAY_INCONS_m_M);
+ }
+ if (formatset) {
+ create_format_list();
+ }
+ else {
+ check_alloc(formatlist=(unsigned int*)malloc(sizeof(int)*indim));
+ for (i=0;i<indim;i++) {
+ formatlist[i]=embdim/indim;
+ }
+ }
+
+ alldim=0;
+ for (i=0;i<indim;i++)
+ alldim += formatlist[i];
+
+ if (mdelayset) {
+ create_delay_list();
+ }
+
+ check_alloc(inddelay=(unsigned int*)malloc(sizeof(int)*alldim));
+
+ rundel=0;
+ if (!mdelayset) {
+ for (i=0;i<indim;i++) {
+ delsum=0;
+ inddelay[rundel++]=delsum;
+ for (j=1;j<formatlist[i];j++) {
+ delsum += delay;
+ inddelay[rundel++]=delsum;
+ }
+ }
+ }
+ else {
+ runmdel=0;
+ for (i=0;i<indim;i++) {
+ delsum=0;
+ inddelay[rundel++]=delsum;
+ for (j=1;j<formatlist[i];j++) {
+ delsum += delaylist[runmdel++];
+ inddelay[rundel++]=delsum;
+ }
+ }
+ }
+
+ maxemb=0;
+ for (i=0;i<alldim;i++)
+ maxemb=(maxemb<inddelay[i])?inddelay[i]:maxemb;
+
+ if (column == NULL) {
+ series=get_multi_series(infile,&length,exclude,&indim,"",dimset,verbosity);
+ }
+ else {
+ series=get_multi_series(infile,&length,exclude,&indim,column,dimset,
+ verbosity);
+ }
+
+ if (stdo) {
+ if (verbosity)
+ fprintf(stderr,"Writing to stdout\n");
+ for (i=maxemb;i<length;i++) {
+ rundel=0;
+ for (j=0;j<indim;j++) {
+ emb=formatlist[j];
+ for (k=0;k<emb;k++)
+ fprintf(stdout,"%e ",series[j][i-inddelay[rundel++]]);
+ }
+ fprintf(stdout,"\n");
+ }
+ }
+ else {
+ fout=fopen(outfile,"w");
+ if (verbosity)
+ fprintf(stderr,"Opened %s for writing\n",outfile);
+ for (i=maxemb;i<length;i++) {
+ for (j=0;j<indim;j++) {
+ rundel=0;
+ emb=formatlist[j];
+ for (k=0;k<emb;k++)
+ fprintf(fout,"%e ",series[j][i-inddelay[rundel++]]);
+ }
+ fprintf(fout,"\n");
+ }
+ fclose(fout);
+ }
+
+ if (formatlist != NULL)
+ free(formatlist);
+ if (delaylist != NULL)
+ free(delaylist);
+ free(inddelay);
+
+ return 0;
+}
Added: trunk/octave-forge/main/system-identification/devel/tisean/src/tisean_functions.cc
===================================================================
--- trunk/octave-forge/main/system-identification/devel/tisean/src/tisean_functions.cc (rev 0)
+++ trunk/octave-forge/main/system-identification/devel/tisean/src/tisean_functions.cc 2012-03-28 13:55:12 UTC (rev 10081)
@@ -0,0 +1 @@
+#include "dealy.c" // produces delay vectors either from a scalar or from a multivariate time series.
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