From: <rik...@us...> - 2009-11-16 15:40:02
|
Revision: 6476 http://octave.svn.sourceforge.net/octave/?rev=6476&view=rev Author: rikcorradini Date: 2009-11-16 15:39:52 +0000 (Mon, 16 Nov 2009) Log Message: ----------- Added Paths: ----------- trunk/octave-forge/extra/openmpi_ext/ trunk/octave-forge/extra/openmpi_ext/COPYING trunk/octave-forge/extra/openmpi_ext/DESCRIPTION trunk/octave-forge/extra/openmpi_ext/INDEX trunk/octave-forge/extra/openmpi_ext/doc/ trunk/octave-forge/extra/openmpi_ext/doc/README trunk/octave-forge/extra/openmpi_ext/inst/ trunk/octave-forge/extra/openmpi_ext/inst/hello2dimmat.m trunk/octave-forge/extra/openmpi_ext/inst/hellosparsemat.m trunk/octave-forge/extra/openmpi_ext/inst/helloworld.m trunk/octave-forge/extra/openmpi_ext/src/ trunk/octave-forge/extra/openmpi_ext/src/MPI_Comm_rank.cc trunk/octave-forge/extra/openmpi_ext/src/MPI_Comm_size.cc trunk/octave-forge/extra/openmpi_ext/src/MPI_Finalize.cc trunk/octave-forge/extra/openmpi_ext/src/MPI_Finalized.cc trunk/octave-forge/extra/openmpi_ext/src/MPI_Init.cc trunk/octave-forge/extra/openmpi_ext/src/MPI_Initialized.cc trunk/octave-forge/extra/openmpi_ext/src/MPI_Recv.cc trunk/octave-forge/extra/openmpi_ext/src/MPI_Send.cc trunk/octave-forge/extra/openmpi_ext/src/Makefile Added: trunk/octave-forge/extra/openmpi_ext/COPYING =================================================================== --- trunk/octave-forge/extra/openmpi_ext/COPYING (rev 0) +++ trunk/octave-forge/extra/openmpi_ext/COPYING 2009-11-16 15:39:52 UTC (rev 6476) @@ -0,0 +1,337 @@ + GNU GENERAL PUBLIC LICENSE + Version 2, June 1991 + + Copyright (C) 1989, 1991 Free Software Foundation, Inc. <http://fsf.org/> + Everyone is permitted to copy and distribute verbatim copies + of this license document, but changing it is not allowed. + + Preamble + + The licenses for most software are designed to take away your +freedom to share and change it. By contrast, the GNU General Public +License is intended to guarantee your freedom to share and change free +software--to make sure the software is free for all its users. This +General Public License applies to most of the Free Software +Foundation's software and to any other program whose authors commit to +using it. (Some other Free Software Foundation software is covered by +the GNU Library General Public License instead.) You can apply it to +your programs, too. + + When we speak of free software, we are referring to freedom, not +price. Our General Public Licenses are designed to make sure that you +have the freedom to distribute copies of free software (and charge for +this service if you wish), that you receive source code or can get it +if you want it, that you can change the software or use pieces of it +in new free programs; and that you know you can do these things. + + To protect your rights, we need to make restrictions that forbid +anyone to deny you these rights or to ask you to surrender the rights. +These restrictions translate to certain responsibilities for you if you +distribute copies of the software, or if you modify it. + + For example, if you distribute copies of such a program, whether +gratis or for a fee, you must give the recipients all the rights that +you have. You must make sure that they, too, receive or can get the +source code. And you must show them these terms so they know their +rights. + + We protect your rights with two steps: (1) copyright the software, and +(2) offer you this license which gives you legal permission to copy, +distribute and/or modify the software. + + Also, for each author's protection and ours, we want to make certain +that everyone understands that there is no warranty for this free +software. If the software is modified by someone else and passed on, we +want its recipients to know that what they have is not the original, so +that any problems introduced by others will not reflect on the original +authors' reputations. + + Finally, any free program is threatened constantly by software +patents. We wish to avoid the danger that redistributors of a free +program will individually obtain patent licenses, in effect making the +program proprietary. To prevent this, we have made it clear that any +patent must be licensed for everyone's free use or not licensed at all. + + The precise terms and conditions for copying, distribution and +modification follow. + + GNU GENERAL PUBLIC LICENSE + TERMS AND CONDITIONS FOR COPYING, DISTRIBUTION AND MODIFICATION + + 0. This License applies to any program or other work which contains +a notice placed by the copyright holder saying it may be distributed +under the terms of this General Public License. The "Program", below, +refers to any such program or work, and a "work based on the Program" +means either the Program or any derivative work under copyright law: +that is to say, a work containing the Program or a portion of it, +either verbatim or with modifications and/or translated into another +language. (Hereinafter, translation is included without limitation in +the term "modification".) Each licensee is addressed as "you". + +Activities other than copying, distribution and modification are not +covered by this License; they are outside its scope. The act of +running the Program is not restricted, and the output from the Program +is covered only if its contents constitute a work based on the +Program (independent of having been made by running the Program). +Whether that is true depends on what the Program does. + + 1. You may copy and distribute verbatim copies of the Program's +source code as you receive it, in any medium, provided that you +conspicuously and appropriately publish on each copy an appropriate +copyright notice and disclaimer of warranty; keep intact all the +notices that refer to this License and to the absence of any warranty; +and give any other recipients of the Program a copy of this License +along with the Program. + +You may charge a fee for the physical act of transferring a copy, and +you may at your option offer warranty protection in exchange for a fee. + + 2. You may modify your copy or copies of the Program or any portion +of it, thus forming a work based on the Program, and copy and +distribute such modifications or work under the terms of Section 1 +above, provided that you also meet all of these conditions: + + a) You must cause the modified files to carry prominent notices + stating that you changed the files and the date of any change. + + b) You must cause any work that you distribute or publish, that in + whole or in part contains or is derived from the Program or any + part thereof, to be licensed as a whole at no charge to all third + parties under the terms of this License. + + c) If the modified program normally reads commands interactively + when run, you must cause it, when started running for such + interactive use in the most ordinary way, to print or display an + announcement including an appropriate copyright notice and a + notice that there is no warranty (or else, saying that you provide + a warranty) and that users may redistribute the program under + these conditions, and telling the user how to view a copy of this + License. (Exception: if the Program itself is interactive but + does not normally print such an announcement, your work based on + the Program is not required to print an announcement.) + +These requirements apply to the modified work as a whole. If +identifiable sections of that work are not derived from the Program, +and can be reasonably considered independent and separate works in +themselves, then this License, and its terms, do not apply to those +sections when you distribute them as separate works. But when you +distribute the same sections as part of a whole which is a work based +on the Program, the distribution of the whole must be on the terms of +this License, whose permissions for other licensees extend to the +entire whole, and thus to each and every part regardless of who wrote it. + +Thus, it is not the intent of this section to claim rights or contest +your rights to work written entirely by you; rather, the intent is to +exercise the right to control the distribution of derivative or +collective works based on the Program. + +In addition, mere aggregation of another work not based on the Program +with the Program (or with a work based on the Program) on a volume of +a storage or distribution medium does not bring the other work under +the scope of this License. + + 3. You may copy and distribute the Program (or a work based on it, +under Section 2) in object code or executable form under the terms of +Sections 1 and 2 above provided that you also do one of the following: + + a) Accompany it with the complete corresponding machine-readable + source code, which must be distributed under the terms of Sections + 1 and 2 above on a medium customarily used for software interchange; or, + + b) Accompany it with a written offer, valid for at least three + years, to give any third party, for a charge no more than your + cost of physically performing source distribution, a complete + machine-readable copy of the corresponding source code, to be + distributed under the terms of Sections 1 and 2 above on a medium + customarily used for software interchange; or, + + c) Accompany it with the information you received as to the offer + to distribute corresponding source code. (This alternative is + allowed only for noncommercial distribution and only if you + received the program in object code or executable form with such + an offer, in accord with Subsection b above.) + +The source code for a work means the preferred form of the work for +making modifications to it. For an executable work, complete source +code means all the source code for all modules it contains, plus any +associated interface definition files, plus the scripts used to +control compilation and installation of the executable. However, as a +special exception, the source code distributed need not include +anything that is normally distributed (in either source or binary +form) with the major components (compiler, kernel, and so on) of the +operating system on which the executable runs, unless that component +itself accompanies the executable. + +If distribution of executable or object code is made by offering +access to copy from a designated place, then offering equivalent +access to copy the source code from the same place counts as +distribution of the source code, even though third parties are not +compelled to copy the source along with the object code. + + 4. You may not copy, modify, sublicense, or distribute the Program +except as expressly provided under this License. Any attempt +otherwise to copy, modify, sublicense or distribute the Program is +void, and will automatically terminate your rights under this License. +However, parties who have received copies, or rights, from you under +this License will not have their licenses terminated so long as such +parties remain in full compliance. + + 5. You are not required to accept this License, since you have not +signed it. However, nothing else grants you permission to modify or +distribute the Program or its derivative works. These actions are +prohibited by law if you do not accept this License. Therefore, by +modifying or distributing the Program (or any work based on the +Program), you indicate your acceptance of this License to do so, and +all its terms and conditions for copying, distributing or modifying +the Program or works based on it. + + 6. Each time you redistribute the Program (or any work based on the +Program), the recipient automatically receives a license from the +original licensor to copy, distribute or modify the Program subject to +these terms and conditions. You may not impose any further +restrictions on the recipients' exercise of the rights granted herein. +You are not responsible for enforcing compliance by third parties to +this License. + + 7. If, as a consequence of a court judgment or allegation of patent +infringement or for any other reason (not limited to patent issues), +conditions are imposed on you (whether by court order, agreement or +otherwise) that contradict the conditions of this License, they do not +excuse you from the conditions of this License. If you cannot +distribute so as to satisfy simultaneously your obligations under this +License and any other pertinent obligations, then as a consequence you +may not distribute the Program at all. For example, if a patent +license would not permit royalty-free redistribution of the Program by +all those who receive copies directly or indirectly through you, then +the only way you could satisfy both it and this License would be to +refrain entirely from distribution of the Program. + +If any portion of this section is held invalid or unenforceable under +any particular circumstance, the balance of the section is intended to +apply and the section as a whole is intended to apply in other +circumstances. + +It is not the purpose of this section to induce you to infringe any +patents or other property right claims or to contest validity of any +such claims; this section has the sole purpose of protecting the +integrity of the free software distribution system, which is +implemented by public license practices. Many people have made +generous contributions to the wide range of software distributed +through that system in reliance on consistent application of that +system; it is up to the author/donor to decide if he or she is willing +to distribute software through any other system and a licensee cannot +impose that choice. + +This section is intended to make thoroughly clear what is believed to +be a consequence of the rest of this License. + + 8. If the distribution and/or use of the Program is restricted in +certain countries either by patents or by copyrighted interfaces, the +original copyright holder who places the Program under this License +may add an explicit geographical distribution limitation excluding +those countries, so that distribution is permitted only in or among +countries not thus excluded. In such case, this License incorporates +the limitation as if written in the body of this License. + + 9. The Free Software Foundation may publish revised and/or new versions +of the General Public License from time to time. Such new versions will +be similar in spirit to the present version, but may differ in detail to +address new problems or concerns. + +Each version is given a distinguishing version number. If the Program +specifies a version number of this License which applies to it and "any +later version", you have the option of following the terms and conditions +either of that version or of any later version published by the Free +Software Foundation. If the Program does not specify a version number of +this License, you may choose any version ever published by the Free Software +Foundation. + + 10. If you wish to incorporate parts of the Program into other free +programs whose distribution conditions are different, write to the author +to ask for permission. For software which is copyrighted by the Free +Software Foundation, write to the Free Software Foundation; we sometimes +make exceptions for this. Our decision will be guided by the two goals +of preserving the free status of all derivatives of our free software and +of promoting the sharing and reuse of software generally. + + NO WARRANTY + + 11. BECAUSE THE PROGRAM IS LICENSED FREE OF CHARGE, THERE IS NO WARRANTY +FOR THE PROGRAM, TO THE EXTENT PERMITTED BY APPLICABLE LAW. EXCEPT WHEN +OTHERWISE STATED IN WRITING THE COPYRIGHT HOLDERS AND/OR OTHER PARTIES +PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED +OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF +MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. THE ENTIRE RISK AS +TO THE QUALITY AND PERFORMANCE OF THE PROGRAM IS WITH YOU. SHOULD THE +PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF ALL NECESSARY SERVICING, +REPAIR OR CORRECTION. + + 12. IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING +WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MAY MODIFY AND/OR +REDISTRIBUTE THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, +INCLUDING ANY GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING +OUT OF THE USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED +TO LOSS OF DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY +YOU OR THIRD PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER +PROGRAMS), EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE +POSSIBILITY OF SUCH DAMAGES. + + END OF TERMS AND CONDITIONS + + How to Apply These Terms to Your New Programs + + If you develop a new program, and you want it to be of the greatest +possible use to the public, the best way to achieve this is to make it +free software which everyone can redistribute and change under these terms. + + To do so, attach the following notices to the program. It is safest +to attach them to the start of each source file to most effectively +convey the exclusion of warranty; and each file should have at least +the "copyright" line and a pointer to where the full notice is found. + + <one line to give the program's name and a brief idea of what it does.> + Copyright (C) <year> <name of author> + + This program is free software; you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation; either version 2 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program; if not, see <http://www.gnu.org/licenses/>. + +Also add information on how to contact you by electronic and paper mail. + +If the program is interactive, make it output a short notice like this +when it starts in an interactive mode: + + Gnomovision version 69, Copyright (C) year name of author + Gnomovision comes with ABSOLUTELY NO WARRANTY; for details type `show w'. + This is free software, and you are welcome to redistribute it + under certain conditions; type `show c' for details. + +The hypothetical commands `show w' and `show c' should show the appropriate +parts of the General Public License. Of course, the commands you use may +be called something other than `show w' and `show c'; they could even be +mouse-clicks or menu items--whatever suits your program. + +You should also get your employer (if you work as a programmer) or your +school, if any, to sign a "copyright disclaimer" for the program, if +necessary. Here is a sample; alter the names: + + Yoyodyne, Inc., hereby disclaims all copyright interest in the program + `Gnomovision' (which makes passes at compilers) written by James Hacker. + + <signature of Ty Coon>, 1 April 1989 + Ty Coon, President of Vice + +This General Public License does not permit incorporating your program into +proprietary programs. If your program is a subroutine library, you may +consider it more useful to permit linking proprietary applications with the +library. If this is what you want to do, use the GNU Library General +Public License instead of this License. Added: trunk/octave-forge/extra/openmpi_ext/DESCRIPTION =================================================================== --- trunk/octave-forge/extra/openmpi_ext/DESCRIPTION (rev 0) +++ trunk/octave-forge/extra/openmpi_ext/DESCRIPTION 2009-11-16 15:39:52 UTC (rev 6476) @@ -0,0 +1,11 @@ +Name: openmpi_ext +Version: 1.0.0 +Date: 2009-11-16 +Author: Riccardo Corradini <ric...@ya...> +Maintainer: Riccardo Corradini <ric...@ya...> +Title: openmpi_ext +Description: MPI functions for parallel computing using simple MPI Derived Datatypes. +Depends: octave (>= 3.2.3), openmpi1.3.3 +Autoload: ? +License: GPL version 2 or later +Url: http://octave.sf.net Added: trunk/octave-forge/extra/openmpi_ext/INDEX =================================================================== --- trunk/octave-forge/extra/openmpi_ext/INDEX (rev 0) +++ trunk/octave-forge/extra/openmpi_ext/INDEX 2009-11-16 15:39:52 UTC (rev 6476) @@ -0,0 +1 @@ +TO be filled Added: trunk/octave-forge/extra/openmpi_ext/doc/README =================================================================== --- trunk/octave-forge/extra/openmpi_ext/doc/README (rev 0) +++ trunk/octave-forge/extra/openmpi_ext/doc/README 2009-11-16 15:39:52 UTC (rev 6476) @@ -0,0 +1,44 @@ +The code is general-purpose, but I would like to use it for econometrics. +So the first step will be to install the following tarball from +http://www.open-mpi.org/software/ompi/v1.3/downloads/openmpi-1.3.3.tar.bz2 +possibly in a multi-core computer to run my simple examples +and configure it for instance in the following way (/home/user is your $HOME) +./configure --enable-mpirun-prefix-by-default --enable-heterogeneous --prefix=/home/user/openmpi-1.3.3/ --enable-static + +and modify .bashrc in your home + OMPIBIN=`$ompi_info -path bindir -parsable | cut -d: -f3` + OMPILIB=`$ompi_info -path libdir -parsable | cut -d: -f3` + OMPISCD=`$ompi_info -path sysconfdir -parsable | cut -d: -f3` + + + +export PATH=$OMPIBIN:$PATH + +export LD_LIBRARY_PATH=:$OMPILIB:$LD_LIBRARY_PATH + +unset ompi_info OMPIBIN OMPILIB OMPISCD + +If you want to install it on a simple toy network, just assign a static ip address on every linux computer and set up +an ssh connection with no password (see for instance http://linuxproblem.org/art_9.html ) and then install openmpi and octave always with the same versions and with the same info on .bashrc for the same user. + +After this type in a terminal mpiCC --showme +In my case I will have something like + +g++ -I/home/user/openmpi-1.3.3/include -pthread -L/home/user/openmpi-1.3.3/lib -lmpi_cxx -lmpi -lopen-rte -lopen-pal -ldl -Wl,--export-dynamic -lnsl -lutil -lm -ldl + +This will be useful for mkoctfile +for instance for MPI_Init.cc we shall have +mkoctfile -I/home/user/openmpi-1.3.3/include -lpthread -L/home/user/openmpi-1.3.3/lib -lmpi_cxx -lmpi -lopen-rte -lopen-pal -ldl -lnsl -lutil -lm -ldl MPI_Init.cc + + + +The m files just contain some very simple examples +More complex examples will be provided in the next future. +See also +http://static.msi.umn.edu/tutorial/scicomp/general/MPI/content6.html +to understand the logic of MPI Derived Datatypes and how could they be easily handled by openmpi_ext package. +Bests regards +Riccardo Corradini + + + Added: trunk/octave-forge/extra/openmpi_ext/inst/hello2dimmat.m =================================================================== --- trunk/octave-forge/extra/openmpi_ext/inst/hello2dimmat.m (rev 0) +++ trunk/octave-forge/extra/openmpi_ext/inst/hello2dimmat.m 2009-11-16 15:39:52 UTC (rev 6476) @@ -0,0 +1,33 @@ +if not(MPI_Initialized) + info = MPI_Init(); +end + + [info my_rank] = MPI_Comm_rank(); + [info p ] = MPI_Comm_size(); + mytag = 48; + + + + if (my_rank != 0) +# Generate a random matrix + message=rand(90,90); +# load message +# rankvect is the vector containing the list of rank destination process + rankvect = 0; + [info] = MPI_Send(message,rankvect,mytag); + else + for source = 1:p-1 + disp("We are at rank 0 that is master etc.."); + [info messager] = MPI_Recv(source,mytag); +# You could also save each result and make comparisons if you don't trust MPI + disp("Rank 0 is the master receiving ... :"); + if (info == true) + disp('OK!'); + endif + endfor + end + + + if not(MPI_Finalized) + info = MPI_Finalize(); + end Added: trunk/octave-forge/extra/openmpi_ext/inst/hellosparsemat.m =================================================================== --- trunk/octave-forge/extra/openmpi_ext/inst/hellosparsemat.m (rev 0) +++ trunk/octave-forge/extra/openmpi_ext/inst/hellosparsemat.m 2009-11-16 15:39:52 UTC (rev 6476) @@ -0,0 +1,46 @@ +if not(MPI_Initialized) + info = MPI_Init(); +end + + [info my_rank] = MPI_Comm_rank(); + [info p ] = MPI_Comm_size(); +# tag[0] ----> type of octave_value +# tag[1] ----> array of three elements 1) num of rows 2) number of columns 3) number of non zero elements +# tag[2] ----> vector of rowindex +# tag[3] ----> vector of columnindex +# tag[4] ----> vector of non zero elements +# These tags will be generated after mytag by the MPI_Send and MPI_Recv (see source code) + + mytag = 48; + + + + +# This is just to fill the sparse matrix + M=5; + N=5; + D=0.9; + message = sprand (M, N, D); +# load message + + + + if (my_rank != 0) + dest = 0; +# rankvect is the vector containing the list of rank destination process + rankvect(1,1) = 0; + [info] = MPI_Send(message,rankvect,mytag); + disp("This is flag for sending the message --") + info + else + for source = 1:p-1 + messager=''; + disp("We are at rank 0 that is master etc.."); + [info messager] = MPI_Recv(source,mytag); + disp("Rank 0 is the master receiving ... :"); + if (messager/message) + disp('OK!'); + endif + messager + endfor + end Added: trunk/octave-forge/extra/openmpi_ext/inst/helloworld.m =================================================================== --- trunk/octave-forge/extra/openmpi_ext/inst/helloworld.m (rev 0) +++ trunk/octave-forge/extra/openmpi_ext/inst/helloworld.m 2009-11-16 15:39:52 UTC (rev 6476) @@ -0,0 +1,56 @@ +## Copyright (C) 2009 Riccardo Corradini <ric...@ya...> +## under the terms of the GNU General Public License. +## +## This program is free software; you can redistribute it and/or modify +## it under the terms of the GNU General Public License as published by +## the Free Software Foundation; either version 2 of the License, or +## (at your option) any later version. +## +## This program is distributed in the hope that it will be useful, +## but WITHOUT ANY WARRANTY; without even the implied warranty of +## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +## GNU General Public License for more details. +## +## You should have received a copy of the GNU General Public License +## along with this program; If not, see <http://www.gnu.org/licenses/>. + + +# Please add the oct files openmpi_ext folder +# For instance +#h = genpath("/home/user/octave/openmpi_ext/"); +#addpath(h); +#clear h; +# if you have 4 cores or a network of 4 computers with a ssh connection with no password and same openmpi 1.3.3 installation +# type at the terminal mpirun -np 4 octave --eval helloworld + + +if not(MPI_Initialized) + info = MPI_Init(); +end + + [info my_rank] = MPI_Comm_rank(); + [info p ] = MPI_Comm_size(); + # Could be any number + mytag = 48; + + + message=""; + if (my_rank != 0) + message = sprintf('Greetings from process: %d!',my_rank); + dest = 0; +# rankvect is the vector containing the list of rank destination process + rankvect = 0; + [info] = MPI_Send(message,rankvect,mytag); + info + else + for source = 1:p-1 + disp("We are at rank 0 that is master etc.."); + [info message] = MPI_Recv(source,mytag); + printf('%s\n', message); + endfor + end + + + if not(MPI_Finalized) + info = MPI_Finalize(); + end \ No newline at end of file Added: trunk/octave-forge/extra/openmpi_ext/src/MPI_Comm_rank.cc =================================================================== --- trunk/octave-forge/extra/openmpi_ext/src/MPI_Comm_rank.cc (rev 0) +++ trunk/octave-forge/extra/openmpi_ext/src/MPI_Comm_rank.cc 2009-11-16 15:39:52 UTC (rev 6476) @@ -0,0 +1,59 @@ +// Copyright (C) 2004-2007 Javier Fernández Baldomero, Mancia Anguita López +// This code has been adjusted for octave3.2.3 and more in +// 2009 by Riccardo Corradini <ric...@ya...> + +// +// This program is free software; you can redistribute it and/or modify +// it under the terms of the GNU General Public License as published by +// the Free Software Foundation; either version 2 of the License, or +// (at your option) any later version. +// +// This program is distributed in the hope that it will be useful, +// but WITHOUT ANY WARRANTY; without even the implied warranty of +// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +// GNU General Public License for more details. +// +// You should have received a copy of the GNU General Public License +// along with this program; If not, see <http://www.gnu.org/licenses/>. + + +#define NAME MPI_Comm_rank +/* + * ---------------------------------------------------- + * Determines the rank of the calling process in the communicator + * [info rank] = MPI_Comm_rank (comm) + * ---------------------------------------------------- + */ + +#include <octave/oct.h> +#include "mpi.h" + +DEFUN_DLD(NAME, args, nargout, +"MPI_Comm_rank Determines rank of calling process in communicator\n\ +\n\ + [info rank] = MPI_Comm_rank (comm)\n\ +\n\ + comm (int) communicator handle. MPI_COMM_NULL not valid\n\ + rank (int) rank of the calling process in group of comm\n\ +\n\ + info (int) return code\n\ + 0 MPI_SUCCESS No error\n\ + 5 MPI_ERR_COMM Invalid communicator (NULL?)\n\ + 13 MPI_ERR_ARG Invalid argument (typically a NULL pointer?)\n\ +\n\ + SEE ALSO: MPI_Comm_size\n\ + comms\n\ +\n\ +") + +{ + octave_value_list results; + int my_rank; + int info = MPI_Comm_rank(MPI_COMM_WORLD,&my_rank); + results(0) = info; + results(1) = my_rank; + + /* [info rank] = MPI_Comm_rank (comm) */ + + return results; +} \ No newline at end of file Added: trunk/octave-forge/extra/openmpi_ext/src/MPI_Comm_size.cc =================================================================== --- trunk/octave-forge/extra/openmpi_ext/src/MPI_Comm_size.cc (rev 0) +++ trunk/octave-forge/extra/openmpi_ext/src/MPI_Comm_size.cc 2009-11-16 15:39:52 UTC (rev 6476) @@ -0,0 +1,59 @@ +// Copyright (C) 2004-2007 Javier Fernández Baldomero, Mancia Anguita López +// This code has been adjusted for octave3.2.3 and more in +// 2009 by Riccardo Corradini <ric...@ya...> + +// +// This program is free software; you can redistribute it and/or modify +// it under the terms of the GNU General Public License as published by +// the Free Software Foundation; either version 2 of the License, or +// (at your option) any later version. +// +// This program is distributed in the hope that it will be useful, +// but WITHOUT ANY WARRANTY; without even the implied warranty of +// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +// GNU General Public License for more details. +// +// You should have received a copy of the GNU General Public License +// along with this program; If not, see <http://www.gnu.org/licenses/>. + +#define NAME MPI_Comm_size +/* + * ---------------------------------------------------- + * Determines the size of the calling process in the communicator + * [info rank] = MPI_Comm_size (comm) + * ---------------------------------------------------- + */ + +#include <octave/oct.h> +#include "mpi.h" + +DEFUN_DLD(NAME, args, nargout, +"MPI_Comm_size Determines rank of calling process in communicator\n\ +\n\ + [info rank] = MPI_Comm_size (comm)\n\ +\n\ + comm (int) communicator handle. MPI_COMM_NULL not valid\n\ + size (int) size of the calling process in group of comm\n\ +\n\ + info (int) return code\n\ + 0 MPI_SUCCESS No error\n\ + 5 MPI_ERR_COMM Invalid communicator (NULL?)\n\ + 13 MPI_ERR_ARG Invalid argument (typically a NULL pointer?)\n\ +\n\ + SEE ALSO: MPI_Comm_rank\n\ + comms\n\ +\n\ +") + +{ + octave_value_list results; + int my_size; + int info = MPI_Comm_size(MPI_COMM_WORLD,&my_size); + results(0) = info; + results(1) = my_size; + + /* [info rank] = MPI_Comm_size (comm) */ + + return results; +} + Added: trunk/octave-forge/extra/openmpi_ext/src/MPI_Finalize.cc =================================================================== --- trunk/octave-forge/extra/openmpi_ext/src/MPI_Finalize.cc (rev 0) +++ trunk/octave-forge/extra/openmpi_ext/src/MPI_Finalize.cc 2009-11-16 15:39:52 UTC (rev 6476) @@ -0,0 +1,49 @@ +// Copyright (C) 2004-2007 Javier Fernández Baldomero, Mancia Anguita López +// This code has been adjusted for octave3.2.3 and more in +// 2009 by Riccardo Corradini <ric...@ya...> + +// +// This program is free software; you can redistribute it and/or modify +// it under the terms of the GNU General Public License as published by +// the Free Software Foundation; either version 2 of the License, or +// (at your option) any later version. +// +// This program is distributed in the hope that it will be useful, +// but WITHOUT ANY WARRANTY; without even the implied warranty of +// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +// GNU General Public License for more details. +// +// You should have received a copy of the GNU General Public License +// along with this program; If not, see <http://www.gnu.org/licenses/>. + +#define NAME MPI_Finalize +/* + * ---------------------------------------------------- + * Terminates MPI execution environment + * info = MPI_Finalize + * ---------------------------------------------------- + */ +#include "mpi.h" +#include <octave/oct.h> + +DEFUN_DLD(NAME, args, nargout, +"MPI_Finalize Terminates MPI execution environment\n\ +\n\ + info = MPI_Finalize\n\ +\n\ + info(int) return code\n\ + 0 MPI_SUCCESS No error\n\ + 17 MPI_ERR_INTERN This is fatal. Please send bug report to OPENMPI\n\ + 16 MPI_ERR_OTHER A different thread attempts to finalize MPI than\n\ + the thread that initialized MPI\n\ +\n\ + SEE ALSO: MPI_Init, MPI_Initialized, MPI_Finalized\n\ + misc\n\ +\n\ +") +{ + + int info = MPI_Finalize(); + + return octave_value(info); +} Added: trunk/octave-forge/extra/openmpi_ext/src/MPI_Finalized.cc =================================================================== --- trunk/octave-forge/extra/openmpi_ext/src/MPI_Finalized.cc (rev 0) +++ trunk/octave-forge/extra/openmpi_ext/src/MPI_Finalized.cc 2009-11-16 15:39:52 UTC (rev 6476) @@ -0,0 +1,57 @@ +// Copyright (C) 2004-2007 Javier Fernández Baldomero, Mancia Anguita López +// This code has been adjusted for octave3.2.3 and more in +// 2009 by Riccardo Corradini <ric...@ya...> + +// under the terms of the GNU General Public License. +// +// This program is free software; you can redistribute it and/or modify +// it under the terms of the GNU General Public License as published by +// the Free Software Foundation; either version 2 of the License, or +// (at your option) any later version. +// +// This program is distributed in the hope that it will be useful, +// but WITHOUT ANY WARRANTY; without even the implied warranty of +// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +// GNU General Public License for more details. +// +// You should have received a copy of the GNU General Public License +// along with this program; If not, see <http://www.gnu.org/licenses/>. + +#define NAME MPI_Finalized +/* + * ---------------------------------------------------- + * Indicates whether MPI_Finalize has completed + * [info flag] = MPI_Finalized + * ---------------------------------------------------- + */ +#include "mpi.h" +#include <octave/oct.h> + +DEFUN_DLD(NAME, args, nargout, +"MPI_Finalized Indicates whether MPI_Finalize has completed\n\ +\n\ + [info flag] = MPI_Finalized\n\ +\n\ + flag(int) 0 false\n\ + 1 true\n\ +\n\ + info(int) return code\n\ + 0 MPI_SUCCESS This function always returns MPI_SUCCESS\n\ +\n\ + SEE ALSO: MPI_Init, MPI_Finalize, MPI_Initialized\n\ + misc\n\ +\n\ +") +{ + octave_value_list results; + int flag; + + + + int info = MPI_Finalized(&flag); + results(0) = info; + results(1) = flag; + return results; + + /* [info flag] = MPI_Finalized */ +} Added: trunk/octave-forge/extra/openmpi_ext/src/MPI_Init.cc =================================================================== --- trunk/octave-forge/extra/openmpi_ext/src/MPI_Init.cc (rev 0) +++ trunk/octave-forge/extra/openmpi_ext/src/MPI_Init.cc 2009-11-16 15:39:52 UTC (rev 6476) @@ -0,0 +1,71 @@ +// Copyright (C) 2004-2007 Javier Fernández Baldomero, Mancia Anguita López +// This code has been adjusted for octave3.2.3 and more in +// 2009 by Riccardo Corradini <ric...@ya...> + +// This program is free software; you can redistribute it and/or modify +// it under the terms of the GNU General Public License as published by +// the Free Software Foundation; either version 2 of the License, or +// (at your option) any later version. +// +// This program is distributed in the hope that it will be useful, +// but WITHOUT ANY WARRANTY; without even the implied warranty of +// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +// GNU General Public License for more details. +// +// You should have received a copy of the GNU General Public License +// along with this program; If not, see <http://www.gnu.org/licenses/>. + + + + + + +/* + * ---------------------------------------------------- + * Initialize the MPI execution environment + * info = MPI_Init [ ( 'arg' [, 'arg']... ) ] + * ---------------------------------------------------- + */ + +#define NAME MPI_Init + +#include "mpi.h" // mpi.h, oct.h +#include <octave/oct.h> + +DEFUN_DLD(NAME, args, nargout, +"MPI_Init Initialize the MPI execution environment\n\ +\n\ + info = MPI_Init [ ( 'arg' [, 'arg']... ) ]\n\ +\n\ + arg (str) arguments to pass\n\ + info(int) return code\n\ + 0 MPI_SUCCESS No error\n\ + 16 MPI_ERR_OTHER Attempt was made to call MPI_INIT a second time\n\ + MPI_INIT may only be called once in a program\n\ + \n\ +\n\ + SEE ALSO: MPI_Finalize, MPI_Initialized, MPI_Finalized\n\ + misc\n\ +\n\ +") +{ + int nargin = args.length(); + for (int i=0; i<nargin; i++){ + if( ! args(i).is_string() ) { + error("MPI_Init: args must be strings"); + return octave_value (MPI_ERR_ARG); // error returns nothing + } + } + + string_vector argvec = args.make_argv("MPI_Init"); + char **argve= argvec.c_str_vec(); + char **argv =&argve[1]; + +// printf("args: "); for (int i=0; i<nargin; i++) printf("%s ",argv[i]); +// printf("\n"); + + int info = MPI_Init(&nargin, &argv); + free(argve); + return octave_value (info); +} + \ No newline at end of file Added: trunk/octave-forge/extra/openmpi_ext/src/MPI_Recv.cc =================================================================== --- trunk/octave-forge/extra/openmpi_ext/src/MPI_Recv.cc (rev 0) +++ trunk/octave-forge/extra/openmpi_ext/src/MPI_Recv.cc 2009-11-16 15:39:52 UTC (rev 6476) @@ -0,0 +1,1432 @@ +// Copyright (C) 2009 Riccardo Corradini <ric...@ya...> +// under the terms of the GNU General Public License. +// +// This program is free software; you can redistribute it and/or modify +// it under the terms of the GNU General Public License as published by +// the Free Software Foundation; either version 2 of the License, or +// (at your option) any later version. +// +// This program is distributed in the hope that it will be useful, +// but WITHOUT ANY WARRANTY; without even the implied warranty of +// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +// GNU General Public License for more details. +// +// You should have received a copy of the GNU General Public License +// along with this program; If not, see <http://www.gnu.org/licenses/>. +/* + * Receives most Octave datatypes into contiguous memory + * using derived datatypes + * info = MPI_Send(var,rank) + */ +#include "mpi.h" +#include <octave/oct.h> +#include <ov-cell.h> // avoid errmsg "cell -- incomplete datatype" +#include <oct-map.h> // avoid errmsg "Oct.map -- invalid use undef type" + +// tested on Octave 3.2.3 +// Octave 3.2.X + +enum ov_t_id +{ + +ov_unknown=0, // t_id=0 +ov_cell, // t_id=1 +ov_scalar, // t_id=2 +ov_complex_scalar, // t_id=3 +ov_matrix, // t_id=4 +ov_diagonal_matrix, // t_id=5 +ov_complex_matrix, // t_id=6 +ov_complex_diagonal_matrix, // t_id=7 +ov_range, // t_id=8 +ov_bool, // t_id=9 +ov_bool_matrix, // t_id=10 +ov_char_matrix, // t_id=11 +ov_string, // t_id=12 +ov_sq_string, // t_id=13 +ov_int8_scalar, // t_id=14 +ov_int16_scalar, // t_id=15 +ov_int32_scalar, // t_id=16 +ov_int64_scalar, // t_id=17 +ov_uint8_scalar, // t_id=18 +ov_uint16_scalar, // t_id=19 +ov_uint32_scalar, // t_id=20 +ov_uint64_scalar, // t_id=21 +ov_int8_matrix, // t_id=22 +ov_int16_matrix, // t_id=23 +ov_int32_matrix, // t_id=24 +ov_int64_matrix, // t_id=25 +ov_uint8_matrix, // t_id=26 +ov_uint16_matrix, // t_id=27 +ov_uint32_matrix, // t_id=28 +ov_uint64_matrix, // t_id=29 +ov_sparse_bool_matrix, // t_id=30 + +ov_sparse_matrix, // t_id=31 +ov_sparse_complex_matrix, +ov_struct, +ov_class, +ov_list, +ov_cs_list, +ov_magic_colon, +ov_built_in_function, +ov_user_defined_function, +ov_dynamically_linked_function, +ov_function_handle, +ov_inline_function, +ov_float_scalar, +ov_float_complex_scalar, +ov_float_matrix, +ov_float_diagonal_matrix, +ov_float_complex_matrix, +ov_float_complex_diagonal_matrix, +ov_permutation_matrix, +ov_null_matrix, +ov_null_string, +ov_null_sq_string, +}; + + + +/*----------------------------------*/ /* forward declaration */ + + + +int recv_class( octave_value &ov, int source, int mytag); /* along the datatype */ +/*----------------------------------*/ /* to send any octave_value */ + + +int recv_string( octave_value &ov, int source, int mytag){ /* directly MPI_Send it, */ +/*-----------------------------*/ /* it's just a string value */ + +OCTAVE_LOCAL_BUFFER(int, tanktag, 2); +tanktag[0]=mytag; +tanktag[1]=mytag+1; +tanktag[2]=mytag+2; + + int info,nitem; + MPI_Status stat; + info = MPI_Recv((&nitem), 1,MPI_INT, source, tanktag[1] , MPI_COMM_WORLD,&stat); +// printf("I have received number of elements %i \n",nitem); + OCTAVE_LOCAL_BUFFER(char,mess,nitem+1); + if (info !=MPI_SUCCESS) return info; + MPI_Datatype fortvec; + MPI_Type_contiguous(nitem,MPI_CHAR, &fortvec); + MPI_Type_commit(&fortvec); + + + info = MPI_Recv(mess, 1,fortvec, source, tanktag[2] , MPI_COMM_WORLD,&stat); +// printf("Flag for string received %i \n",info); + std::string cpp_string; + cpp_string = mess; + ov = cpp_string; + if (info !=MPI_SUCCESS) return info; + return(MPI_SUCCESS); +} + +int recv_matrix(octave_value &ov,int source, int mytag){ + +OCTAVE_LOCAL_BUFFER(int, tanktag, 5); +tanktag[0] = mytag; +tanktag[1] = mytag+1; +tanktag[2] = mytag+2; +tanktag[3] = mytag+3; +tanktag[4] = mytag+4; + + int info; + int nitem,nd; + MPI_Status stat; + dim_vector dv; + +// nitem is the total number of elements + info = MPI_Recv((&nitem), 1,MPI_INT, source, tanktag[1] , MPI_COMM_WORLD,&stat); +// printf("I have received number of elements %i \n",nitem); + if (info !=MPI_SUCCESS) return info; +// ndims is number of dimensions + info = MPI_Recv((&nd), 1,MPI_INT, source, tanktag[2] , MPI_COMM_WORLD,&stat); +// printf("I have received number of dimensions %i \n",nd); + if (info !=MPI_SUCCESS) return info; +// Now create contiguos datatype for dim vector + dv.resize(nd); + OCTAVE_LOCAL_BUFFER(int,dimV,nd); + MPI_Datatype dimvec; + MPI_Type_contiguous(nd,MPI_INT, &dimvec); + MPI_Type_commit(&dimvec); + + info = MPI_Recv((dimV), 1,dimvec, source, tanktag[3] , MPI_COMM_WORLD,&stat); + if (info !=MPI_SUCCESS) return info; + +// Now reverse the content of int vector into dim vector + for (octave_idx_type i=0; i<nd; i++) + { + + dv(i) = dimV[i] ; +// printf("I am printing dimvector %i \n",dimV[i]); + } + NDArray myNDA(dv); +// double *p = myNDA.fortran_vec(); + OCTAVE_LOCAL_BUFFER(double,LBNDA,nitem); +// printf("BUFFER CREATED \n"); + // Now create the contiguous derived datatype + MPI_Datatype fortvec; + MPI_Type_contiguous(nitem,MPI_DOUBLE, &fortvec); + MPI_Type_commit(&fortvec); +// printf("I am printing dimvector %i \n",tanktag[4]); + info = MPI_Recv((LBNDA), 1,fortvec, source, tanktag[4] , MPI_COMM_WORLD,&stat); +// printf("info for receiving data is = %i \n",info); + if (info !=MPI_SUCCESS) return info; + for (octave_idx_type i=0; i<nitem; i++) + { +// *LBNDA = *p; +// LBNDA++; +// p++; + myNDA(i)=LBNDA[i]; + } + ov = myNDA; +// printf("info for receiving scalar matrix is = %i \n",info); + +} + +int recv_float_matrix(octave_value &ov,int source, int mytag){ + +OCTAVE_LOCAL_BUFFER(int, tanktag, 5); +tanktag[0] = mytag; +tanktag[1] = mytag+1; +tanktag[2] = mytag+2; +tanktag[3] = mytag+3; +tanktag[4] = mytag+4; + int info; + int nitem,nd; + MPI_Status stat; + dim_vector dv; + +// nitem is the total number of elements + info = MPI_Recv((&nitem), 1,MPI_INT, source, tanktag[1] , MPI_COMM_WORLD,&stat); +// printf("I have received number of elements %i \n",nitem); + if (info !=MPI_SUCCESS) return info; +// ndims is number of dimensions + info = MPI_Recv((&nd), 1,MPI_INT, source, tanktag[2] , MPI_COMM_WORLD,&stat); +// printf("I have received number of dimensions %i \n",nd); + if (info !=MPI_SUCCESS) return info; +// Now create contiguos datatype for dim vector + dv.resize(nd); + OCTAVE_LOCAL_BUFFER(int,dimV,nd); + MPI_Datatype dimvec; + MPI_Type_contiguous(nd,MPI_INT, &dimvec); + MPI_Type_commit(&dimvec); + + info = MPI_Recv((dimV), 1,dimvec, source, tanktag[3] , MPI_COMM_WORLD,&stat); + if (info !=MPI_SUCCESS) return info; + +// Now reverse the content of int vector into dim vector + for (octave_idx_type i=0; i<nd; i++) + { +// printf("I am printing dimvector %i \n",dimV[i]); + dv(i) = dimV[i] ; + } + FloatNDArray myNDA(dv); + float *p = myNDA.fortran_vec(); + OCTAVE_LOCAL_BUFFER(float,LBNDA,nitem); +// printf("BUFFER CREATED \n"); + // Now create the contiguous derived datatype + MPI_Datatype fortvec; + MPI_Type_contiguous(nitem,MPI_FLOAT, &fortvec); + MPI_Type_commit(&fortvec); + + info = MPI_Recv((LBNDA), 1,fortvec, source, tanktag[4] , MPI_COMM_WORLD,&stat); +// printf("info for receiving data is = %i \n",info); + if (info !=MPI_SUCCESS) return info; + for (octave_idx_type i=0; i<nitem; i++) + { +// *LBNDA = *p; +// LBNDA++; +// p++; + myNDA(i)=LBNDA[i]; + } + ov = myNDA; +// printf("info for receiving scalar matrix is = %i \n",info); + +} + + + +int recv_complex_matrix(octave_value &ov,int source, int mytag){ + +OCTAVE_LOCAL_BUFFER(int, tanktag, 6); +tanktag[0] = mytag; +tanktag[1] = mytag+1; +tanktag[2] = mytag+2; +tanktag[3] = mytag+3; +tanktag[4] = mytag+4; +tanktag[5] = mytag+5; + + int info; + int nitem,nd; + MPI_Status stat; + dim_vector dv; + +// nitem is the total number of elements + info = MPI_Recv((&nitem), 1,MPI_INT, source, tanktag[1] , MPI_COMM_WORLD,&stat); +// printf("I have received number of elements %i \n",nitem); + if (info !=MPI_SUCCESS) return info; +// ndims is number of dimensions + info = MPI_Recv((&nd), 1,MPI_INT, source, tanktag[2] , MPI_COMM_WORLD,&stat); +// printf("I have received number of dimensions %i \n",nd); + if (info !=MPI_SUCCESS) return info; +// Now create contiguos datatype for dim vector + dv.resize(nd); + OCTAVE_LOCAL_BUFFER(int,dimV,nd); + MPI_Datatype dimvec; + MPI_Type_contiguous(nd,MPI_INT, &dimvec); + MPI_Type_commit(&dimvec); + + info = MPI_Recv((dimV), 1,dimvec, source, tanktag[3] , MPI_COMM_WORLD,&stat); + if (info !=MPI_SUCCESS) return info; + +// Now reverse the content of int vector into dim vector + for (octave_idx_type i=0; i<nd; i++) + { +// printf("I am printing dimvector %i \n",i); + dv(i) = dimV[i] ; + } + NDArray rmyNDA(dv); // for the real part + NDArray imyNDA(dv); // for the img part + + ComplexNDArray oa (dv); /* Create->Delete on ret?!? */ + + double *p = rmyNDA.fortran_vec(); + double *ip = imyNDA.fortran_vec(); + OCTAVE_LOCAL_BUFFER(double,LBNDA,nitem); + OCTAVE_LOCAL_BUFFER(double,CLBNDA,nitem); + +// printf("BUFFER CREATED \n"); + // Now create the contiguous derived datatype + MPI_Datatype fortvec; + MPI_Type_contiguous(nitem,MPI_DOUBLE, &fortvec); + MPI_Type_commit(&fortvec); + + info = MPI_Recv((LBNDA), 1,fortvec, source, tanktag[4] , MPI_COMM_WORLD,&stat); +// printf("info for receiving data is = %i \n",info); + if (info !=MPI_SUCCESS) return info; + + info = MPI_Recv((CLBNDA), 1,fortvec, source, tanktag[5] , MPI_COMM_WORLD,&stat); +// printf("info for receiving data is = %i \n",info); + if (info !=MPI_SUCCESS) return info; + + + for (octave_idx_type i=0; i<nitem; i++) + { +// *LBNDA = *p; +// LBNDA++; +// p++; + rmyNDA(i)=LBNDA[i]; + imyNDA(i)=CLBNDA[i]; + oa(i) = Complex (rmyNDA (i), imyNDA (i)); + } + ov = oa; + +return(MPI_SUCCESS); +} + + +int recv_float_complex_matrix(octave_value &ov,int source, int mytag){ + +OCTAVE_LOCAL_BUFFER(int, tanktag, 6); +tanktag[0] = mytag; +tanktag[1] = mytag+1; +tanktag[2] = mytag+2; +tanktag[3] = mytag+3; +tanktag[4] = mytag+4; +tanktag[5] = mytag+5; + + int info; + int nitem,nd; + MPI_Status stat; + dim_vector dv; + +// nitem is the total number of elements + info = MPI_Recv((&nitem), 1,MPI_INT, source, tanktag[1] , MPI_COMM_WORLD,&stat); +// printf("I have received number of elements %i \n",nitem); + if (info !=MPI_SUCCESS) return info; +// ndims is number of dimensions + info = MPI_Recv((&nd), 1,MPI_INT, source, tanktag[2] , MPI_COMM_WORLD,&stat); +// printf("I have received number of dimensions %i \n",nd); + if (info !=MPI_SUCCESS) return info; +// Now create contiguos datatype for dim vector + dv.resize(nd); + OCTAVE_LOCAL_BUFFER(int,dimV,nd); + MPI_Datatype dimvec; + MPI_Type_contiguous(nd,MPI_INT, &dimvec); + MPI_Type_commit(&dimvec); + + info = MPI_Recv((dimV), 1,dimvec, source, tanktag[3] , MPI_COMM_WORLD,&stat); + if (info !=MPI_SUCCESS) return info; + +// Now reverse the content of int vector into dim vector + for (octave_idx_type i=0; i<nd; i++) + { +// printf("I am printing dimvector %i \n",i); + dv(i) = dimV[i] ; + } + FloatNDArray rmyNDA(dv); // for the real part + FloatNDArray imyNDA(dv); // for the img part + + FloatComplexNDArray oa (dv); /* Create->Delete on ret?!? */ + + float *p = rmyNDA.fortran_vec(); + float *ip = imyNDA.fortran_vec(); + OCTAVE_LOCAL_BUFFER(float,LBNDA,nitem); + OCTAVE_LOCAL_BUFFER(float,CLBNDA,nitem); + +// printf("BUFFER CREATED \n"); + // Now create the contiguous derived datatype + MPI_Datatype fortvec; + MPI_Type_contiguous(nitem,MPI_DOUBLE, &fortvec); + MPI_Type_commit(&fortvec); + + info = MPI_Recv((LBNDA), 1,fortvec, source, tanktag[4] , MPI_COMM_WORLD,&stat); +// printf("info for receiving data is = %i \n",info); + if (info !=MPI_SUCCESS) return info; + + info = MPI_Recv((CLBNDA), 1,fortvec, source, tanktag[5] , MPI_COMM_WORLD,&stat); +// printf("info for receiving data is = %i \n",info); + if (info !=MPI_SUCCESS) return info; + + + for (octave_idx_type i=0; i<nitem; i++) + { +// *LBNDA = *p; +// LBNDA++; +// p++; + rmyNDA(i)=LBNDA[i]; + imyNDA(i)=CLBNDA[i]; + std::complex<float> c = real(rmyNDA(i))+imag(imyNDA(i)); + oa(i) = c; + } + ov = oa; + +return(MPI_SUCCESS); +} + + + + + + +int recv_sp_mat(octave_value &ov,int source, int mytag){ +int info; +/* int nr = m.rows(); + int nc = m.cols (); + int nnzm = m.nzmax ();*/ +// tag[0] ----> type of octave_value +// tag[1] ----> array of three elements 1) num of rows 2) number of columns 3) number of non zero elements +// tag[2] ----> vector of rowindex +// tag[3] ----> vector of columnindex +// tag[5] ----> vector of number of non zero elements +OCTAVE_LOCAL_BUFFER(int, tanktag,6); +tanktag[0] = mytag; +tanktag[1] = mytag+1; +tanktag[2] = mytag+2; +tanktag[3] = mytag+3; +tanktag[4] = mytag+4; +tanktag[5] = mytag+5; + +MPI_Status stat; + +OCTAVE_LOCAL_BUFFER(int,s,3); + +// Create a contiguous derived datatype +MPI_Datatype sintsparse; +MPI_Type_contiguous(3,MPI_INT, &sintsparse); +MPI_Type_commit(&sintsparse); + +// receive the sintsparse vector named s +info = MPI_Recv(s, 1, sintsparse, source, tanktag[1], MPI_COMM_WORLD, &stat); +if (info !=MPI_SUCCESS) return info; + +// int appo1, appo2, appo3; +// appo1 = s[0]; +// appo2 = s[1]; +// appo3 = s[2]; +// +// printf("appo 1 is %i \n",appo1); +// printf("appo 2 is %i \n",appo2); +// printf("appo 3 is %i \n",appo3); + + + +SparseMatrix m(s[0],s[1],s[2]); + +// Create a contiguous derived datatype for row index +OCTAVE_LOCAL_BUFFER(int,sridx,s[2]); +OCTAVE_LOCAL_BUFFER(double,sdata,s[2]); +// Create a contiguous derived datatype for column index +OCTAVE_LOCAL_BUFFER(int,scidx,s[1]+1); +MPI_Datatype rowindex; +MPI_Type_contiguous(s[2],MPI_INT, &rowindex); +MPI_Type_commit(&rowindex); +MPI_Datatype datavect; +MPI_Type_contiguous(s[2],MPI_DOUBLE, &datavect); +MPI_Type_commit(&datavect); +MPI_Datatype columnindex; +MPI_Type_contiguous(s[1]+1,MPI_INT, &columnindex); +MPI_Type_commit(&columnindex); + +// Now receive the two vectors + +// receive the vector with row indexes + info = MPI_Recv(sridx,1,rowindex,source,tanktag[2],MPI_COMM_WORLD,&stat); +// printf("Hope everything is fine here with ridx %i =\n",info); + if (info !=MPI_SUCCESS) return info; + +// receive the vector with column indexes + info = MPI_Recv(scidx,1,columnindex,source,tanktag[3],MPI_COMM_WORLD, &stat); +// printf("Hope everything is fine here with scidx %i =\n",info); + if (info !=MPI_SUCCESS) return info; + + info = MPI_Recv(sdata,1,datavect,source,tanktag[4],MPI_COMM_WORLD,&stat); +// printf("Hope everything is fine here with data vect %i =\n",info); + +// int appoc; +NDArray buf (dim_vector (m.capacity(), 1)); +for (octave_idx_type i = 0; i < s[2]; i++) +{ + m.ridx(i) = sridx[i]; + m.data(i) = sdata[i]; + buf(i) = sdata[i]; +// appoc = m.ridx(i); +// printf("apporow is %i \n",appoc); +// printf("appodata is %d \n",sdata[i]); +} +for (octave_idx_type i = 0; i < s[1]+1; i++) +{ + m.cidx(i) = scidx[i]; +// appoc=m.cidx(i); +// printf("appocol is %i \n",appoc); +} + + +ov = m; +return(info); + + +} + + +//here ! int matrixes +int recv_int8_matrix(octave_value &ov,int source, int mytag){ + +OCTAVE_LOCAL_BUFFER(int, tanktag, 5); +tanktag[0] = mytag; +tanktag[1] = mytag+1; +tanktag[2] = mytag+2; +tanktag[3] = mytag+3; +tanktag[4] = mytag+4; + int info; + int nitem,nd; + MPI_Status stat; + dim_vector dv; + +// nitem is the total number of elements + info = MPI_Recv((&nitem), 1,MPI_INT, source, tanktag[1] , MPI_COMM_WORLD,&stat); +// printf("I have received number of elements %i \n",nitem); + if (info !=MPI_SUCCESS) return info; +// ndims is number of dimensions + info = MPI_Recv((&nd), 1,MPI_INT, source, tanktag[2] , MPI_COMM_WORLD,&stat); +// printf("I have received number of dimensions %i \n",nd); + if (info !=MPI_SUCCESS) return info; +// Now create contiguos datatype for dim vector + dv.resize(nd); + OCTAVE_LOCAL_BUFFER(int,dimV,nd); + MPI_Datatype dimvec; + MPI_Type_contiguous(nd,MPI_INT, &dimvec); + MPI_Type_commit(&dimvec); + + info = MPI_Recv((dimV), 1,dimvec, source, tanktag[3] , MPI_COMM_WORLD,&stat); + if (info !=MPI_SUCCESS) return info; + +// Now reverse the content of int vector into dim vector + for (octave_idx_type i=0; i<nd; i++) + { +// printf("I am printing dimvector %i \n",i); + dv(i) = dimV[i] ; + } + int8NDArray myNDA(dv); +// double *p = myNDA.fortran_vec(); + OCTAVE_LOCAL_BUFFER(octave_int8,LBNDA,nitem); +// printf("BUFFER CREATED \n"); + // Now create the contiguous derived datatype + MPI_Datatype fortvec; + MPI_Type_contiguous(nitem,MPI_BYTE, &fortvec); + MPI_Type_commit(&fortvec); + + info = MPI_Recv((LBNDA), 1,fortvec, source, tanktag[4] , MPI_COMM_WORLD,&stat); +// printf("info for receiving data is = %i \n",info); + if (info !=MPI_SUCCESS) return info; + for (octave_idx_type i=0; i<nitem; i++) + { +// *LBNDA = *p; +// LBNDA++; +// p++; + myNDA(i)=LBNDA[i]; + } + ov = myNDA; +// printf("info for receiving scalar matrix is = %i \n",info); + +} + +int recv_int16_matrix(octave_value &ov,int source, int mytag){ + +OCTAVE_LOCAL_BUFFER(int, tanktag, 5); +tanktag[0] = mytag; +tanktag[1] = mytag+1; +tanktag[2] = mytag+2; +tanktag[3] = mytag+3; +tanktag[3] = mytag+4; + int info; + int nitem,nd; + MPI_Status stat; + dim_vector dv; + +// nitem is the total number of elements + info = MPI_Recv((&nitem), 1,MPI_INT, source, tanktag[1] , MPI_COMM_WORLD,&stat); +// printf("I have received number of elements %i \n",nitem); + if (info !=MPI_SUCCESS) return info; +// ndims is number of dimensions + info = MPI_Recv((&nd), 1,MPI_INT, source, tanktag[2] , MPI_COMM_WORLD,&stat); +// printf("I have received number of dimensions %i \n",nd); + if (info !=MPI_SUCCESS) return info; +// Now create contiguos datatype for dim vector + dv.resize(nd); + OCTAVE_LOCAL_BUFFER(int,dimV,nd); + MPI_Datatype dimvec; + MPI_Type_contiguous(nd,MPI_INT, &dimvec); + MPI_Type_commit(&dimvec); + + info = MPI_Recv((dimV), 1,dimvec, source, tanktag[3] , MPI_COMM_WORLD,&stat); + if (info !=MPI_SUCCESS) return info; + +// Now reverse the content of int vector into dim vector + for (octave_idx_type i=0; i<nd; i++) + { +// printf("I am printing dimvector %i \n",i); + dv(i) = dimV[i] ; + } + int16NDArray myNDA(dv); +// double *p = myNDA.fortran_vec(); + OCTAVE_LOCAL_BUFFER(octave_int16,LBNDA,nitem); +// printf("BUFFER CREATED \n"); + // Now create the contiguous derived datatype + MPI_Datatype fortvec; + MPI_Type_contiguous(nitem,MPI_SHORT, &fortvec); + MPI_Type_commit(&fortvec); + + info = MPI_Recv((LBNDA), 1,fortvec, source, tanktag[4] , MPI_COMM_WORLD,&stat); +// printf("info for receiving data is = %i \n",info); + if (info !=MPI_SUCCESS) return info; + for (octave_idx_type i=0; i<nitem; i++) + { +// *LBNDA = *p; +// LBNDA++; +// p++; + myNDA(i)=LBNDA[i]; + } + ov = myNDA; +// printf("info for receiving scalar matrix is = %i \n",info); + return(info); +} + + +int recv_int32_matrix(octave_value &ov,int source, int mytag){ + +OCTA... [truncated message content] |