OCTAVA

This respoitory contains all the sourcecode required to run the OCTAVA software

In order to install the software for editing, please follow the following instructions:

1. Downoald OCTAVA.mlprj and the folder sripts into your local directory
2. Copy the ImageJ installation and source files into your directory
3. Save mij.jar and imagej-matlab-0.7.2 in the ImageJ folder
4. Save OCTAVA.ijm into the folder ...ImageJ\Fiji\macros\OCTAVA Tools

Pre-compiled MATLAB app and standalone versions of OCTAVA are available upon request
from Gavrielle by email: gavuntracht at gmail dot com

Rights and Permisisons

OCTAVA employs the following existing software packages

1. ImageJ (pulblicly available)
   ImageJ (http://rsb.info.nih.gov/ij/) is a public domain Java image processing program inspired by NIH Image for the Macintosh.
   It runs, either as an online applet or as a downloadable application, on any computer with a Java 1.1 or later virtual machine.
   Downloadable distributions are available for Windows, Mac OS, Mac OS X and Linux.
   The author, Wayne Rasband (wayne@codon.nih.gov), is at the Research Services Branch, National Institute of Mental Health,
   Bethesda, Maryland, USA.

2. Angiogenesis analyzer in ImageJ
   Written by Gilles Carpentier, 2008. The macro is available at http://rsb.info.nih.gov/ij/macros/toolsets/Dot%20Blot%20Analyzer.txt
   and more information can be found at http://image.bio.methods.free.fr/dotblot.html).

3. ImageJ-MATLAB package
   Freely available extension to ImageJ2 (http://imagej.net/Downloads). Installation and use instructions available at
   http://imagej.net/MATLAB_Scripting. Tested with ImageJ 2.0.0-rc-54, Java 1.8.0_66 and MATLAB R2015b.
   More information is available at https://doi.org/10.1093/bioinformatics/btw681.