If you would like to refer to this comment somewhere else in this project, copy and paste the following link:
Anonymous
-
2008-01-15
Logged In: YES
user_id=1977565
Originator: YES
The original submission log lacked all of the "parent term" text, perhaps a bug in the web form? Anyway, I put those back in, fixed a few blank boxes, and cleaned up the formatting. And added one more term.
File Added: TOSubmissions for SourceForge version-modified.xls
If you would like to refer to this comment somewhere else in this project, copy and paste the following link:
Request: TO:0000496 carotenoid content is a subset of flavonoid content (TO:0000290), which is wrong, it should be instead a subset of phytochemical compound content (TO:0000674)
pj: accepted. Fixed.
request: root cracking: Physical cracking of a storage root caused by genetic or environmental factors, or by post-harvest handling
pj: Suggested definition: Physical cracking of a root caused by genetic or environmental factors, or by post-harvest storage and handling of the root part.
request: seed spines: The number, size, or physical distribution of spines on the seed
pj:
-Which species are we looking at.
-Are these the same as 'seed trichomes/hairs'
-number/size/distribution are actually three different traits.
We have something similar 'leaf pubescence': Extent of presence (presence of hairs) on the leaf blade surface. If you are looking at the similar structures we can create terms like 'seed pubescence'
request: total dissolved solids content: The concentration of water soluble components in the plant as determined by refractive index. This trait is usually highly correlated with total soluble sugar content (TO:0000340)
pj:
-can we call it 'total water soluble content'.
-are you looking at fresh/dried tissue sample/whole plant.
Following terms were added. Working on others on bulb and cloves.
[Term]
id: TO:0002694
name: flavor trait
def: "An assay to detrmine the sensory impression of a food product or other substance by the chemical senses of taste and smell." [GR:pj]
is_a: TO:0000281 ! metabolite content related trait
is_a: TO:0000597 ! quality trait
[Term]
id: TO:0002695
name: beta-carotene content
def: "The beta-carotene content in a plant or plant part. " [GR:pj]
comment: beta-carotene is the most common form of carotenoid.
exact_synonym: "beta-carotenoid content" []
is_a: TO:0002697 ! cyclic carotene content
[Term]
id: TO:0002696
name: alpha carotene content
def: "The alpha-carotene content in a plant or plant part. " [GR:pj]
comment: alpha-carotene is the second most common form of carotenoid.
exact_synonym: "alpha-carotenoid content" []
is_a: TO:0002697 ! cyclic carotene content
[Term]
id: TO:0002697
name: cyclic carotene content
def: "The cyclic carotene content in a plant or plant part. " [GR:pj]
is_a: TO:0000289 ! carotene content
[Term]
id: TO:0002698
name: acyclic carotene content
def: "The acyclic carotene content in a plant or plant part. " [GR:pj]
is_a: TO:0000289 ! carotene content
[Term]
id: TO:0002699
name: lycopene content
def: "The lycopene content in a plant or plant part. " [GR:pj]
comment: Lycopene is the most efficient quencher of singlet oxygen free radicals.
is_a: TO:0002698 ! acyclic carotene content
[Term]
id: TO:0002700
name: pungency
def: "The quality of producing a sharp sensation of taste or smell." [GR:pj]
is_a: TO:0002694 ! flavor trait
[Term]
id: TO:0002701
name: lutein content
def: "The leutein content in a plant or plant part. " [GR:pj]
is_a: TO:0000301 ! xanthophyll content
[Term]
id: TO:0002703
name: protist disease resistance
def: "The resistance exhibited by a plant or a group of plants (population) in response to the disease caused by a protist infection as compared to the susceptible and/or the reference plants of the same species." [GR:pj]
is_a: TO:0000112 ! disease resistance
[Term]
id: TO:0002704
name: Meloidogyne incognita resistance
def: "Causal agent\: Meloidogyne incognita. Symptom\: resistant to damage caused by the pathogen Meloidogyne incognita (root knot nematode). It produces characteristic galls (swellings) on roots." [GR:pj]
is_a: TO:0000384 ! nematode damage resistance
[Term]
id: TO:0002705
name: cucurbit downy mildew resistance
def: "Causal agent\: Pseudoperonospora cubensis. It causes the downy mildew disease in cucurbits." [GR:pj]
is_a: TO:0000439 ! fungal disease resistance
[Term]
id: TO:0002706
name: Meloidogyne javanica resistance
def: "Causal agent\: Meloidogyne javanica. Symptom\: resistant to damage caused by the pathogen Meloidogyne javanica (root knot nematode). It produces characteristic galls (swellings) on roots." [GR:pj]
is_a: TO:0000384 ! nematode damage resistance
[Term]
id: TO:0002707
name: petiole color
def: "The color of the petiole." [GR:pj]
relationship: part_of TO:0000326 ! leaf color
[Term]
id: TO:0002708
name: xylem color
def: "The color of the xylem tissue." [GR:pj]
is_a: TO:0000470 ! vascular tissue related trait
[Term]
id: TO:0002709
name: phloem color
def: "The color of the phloem tissue." [GR:pj]
is_a: TO:0000470 ! vascular tissue related trait
[Term]
id: TO:0002710
name: root shape
def: "The shape of the plant root system." [GR:pj]
is_a: TO:0000043 ! root anatomy and morphology trait
[Term]
id: TO:0002711
name: total water soluble content
def: "The concentration of water soluble components in the plant as determined by refractive index. " [GR:pj]
is_a: TO:0000281 ! metabolite content related trait
If you would like to refer to this comment somewhere else in this project, copy and paste the following link:
Anonymous
-
2008-02-14
Logged In: YES
user_id=1977565
Originator: YES
request: root cracking: Physical cracking of a storage root caused by
genetic or environmental factors, or by post-harvest handling
pj: Suggested definition: Physical cracking of a root caused by genetic or
environmental factors, or by post-harvest storage and handling of the root
part.
ds: Ok, this is fine.
request: total dissolved solids content: The concentration of water
soluble components in the plant as determined by refractive index. This
trait is usually highly correlated with total soluble sugar content
(TO:0000340)
pj:
-can we call it 'total water soluble content'.
-are you looking at fresh/dried tissue sample/whole plant.
ds: This is always in fresh tissue, in our case in carrot roots, but it is used for many crops, e.g. tomato fruits
'total water soluble content' is fine, but maybe we can add a note in the comment such as
" this is commonly also referred to as total dissolved solids"
request: seed spines:
request: bulb / clove/ etc.
we are discussing these two, and will let you know later
If you would like to refer to this comment somewhere else in this project, copy and paste the following link:
[Term]
id: TO:0020087
name: root cracking
def: "A trait measuring the extent of physical cracking of a root caused by genetic, environmental factors or by post-harvest storage and handling of the root or root part." [GR:pj]
is_a: TO:0000168 ! abiotic stress trait
created_by: jaiswalp
creation_date: 2011-08-19T03:44:21Z
[Term]
id: TO:0020088
name: total water soluble content
def: "A trait to measure the concentration of water soluble components in the plant as determined by refractive index." []
comment: This trait is usually highly correlated with total soluble sugar content (TO:0000340). Often determined in fresh tissue.
synonym: "total dissolved solids content" EXACT []
is_a: TO:0000281 ! metabolite content related trait
created_by: jaiswalp
creation_date: 2011-08-19T03:47:00Z
If you would like to refer to this comment somewhere else in this project, copy and paste the following link:
A record of our submission on 2008-01-09
Cleaned up the file
Logged In: YES
user_id=1977565
Originator: YES
The original submission log lacked all of the "parent term" text, perhaps a bug in the web form? Anyway, I put those back in, fixed a few blank boxes, and cleaned up the formatting. And added one more term.
File Added: TOSubmissions for SourceForge version-modified.xls
Logged In: YES
user_id=561361
Originator: NO
Request: TO:0000496 carotenoid content is a subset of flavonoid content (TO:0000290), which is wrong, it should be instead a subset of phytochemical compound content (TO:0000674)
pj: accepted. Fixed.
request: root cracking: Physical cracking of a storage root caused by genetic or environmental factors, or by post-harvest handling
pj: Suggested definition: Physical cracking of a root caused by genetic or environmental factors, or by post-harvest storage and handling of the root part.
request: seed spines: The number, size, or physical distribution of spines on the seed
pj:
-Which species are we looking at.
-Are these the same as 'seed trichomes/hairs'
-number/size/distribution are actually three different traits.
We have something similar 'leaf pubescence': Extent of presence (presence of hairs) on the leaf blade surface. If you are looking at the similar structures we can create terms like 'seed pubescence'
request: total dissolved solids content: The concentration of water soluble components in the plant as determined by refractive index. This trait is usually highly correlated with total soluble sugar content (TO:0000340)
pj:
-can we call it 'total water soluble content'.
-are you looking at fresh/dried tissue sample/whole plant.
Following terms were added. Working on others on bulb and cloves.
[Term]
id: TO:0002694
name: flavor trait
def: "An assay to detrmine the sensory impression of a food product or other substance by the chemical senses of taste and smell." [GR:pj]
is_a: TO:0000281 ! metabolite content related trait
is_a: TO:0000597 ! quality trait
[Term]
id: TO:0002695
name: beta-carotene content
def: "The beta-carotene content in a plant or plant part. " [GR:pj]
comment: beta-carotene is the most common form of carotenoid.
exact_synonym: "beta-carotenoid content" []
is_a: TO:0002697 ! cyclic carotene content
[Term]
id: TO:0002696
name: alpha carotene content
def: "The alpha-carotene content in a plant or plant part. " [GR:pj]
comment: alpha-carotene is the second most common form of carotenoid.
exact_synonym: "alpha-carotenoid content" []
is_a: TO:0002697 ! cyclic carotene content
[Term]
id: TO:0002697
name: cyclic carotene content
def: "The cyclic carotene content in a plant or plant part. " [GR:pj]
is_a: TO:0000289 ! carotene content
[Term]
id: TO:0002698
name: acyclic carotene content
def: "The acyclic carotene content in a plant or plant part. " [GR:pj]
is_a: TO:0000289 ! carotene content
[Term]
id: TO:0002699
name: lycopene content
def: "The lycopene content in a plant or plant part. " [GR:pj]
comment: Lycopene is the most efficient quencher of singlet oxygen free radicals.
is_a: TO:0002698 ! acyclic carotene content
[Term]
id: TO:0002700
name: pungency
def: "The quality of producing a sharp sensation of taste or smell." [GR:pj]
is_a: TO:0002694 ! flavor trait
[Term]
id: TO:0002701
name: lutein content
def: "The leutein content in a plant or plant part. " [GR:pj]
is_a: TO:0000301 ! xanthophyll content
[Term]
id: TO:0002702
name: cercospora leaf spot resistance
def: "Causal agent\: Cercospora spp." [GR:pj]
is_a: TO:0000439 ! fungal disease resistance
[Term]
id: TO:0002703
name: protist disease resistance
def: "The resistance exhibited by a plant or a group of plants (population) in response to the disease caused by a protist infection as compared to the susceptible and/or the reference plants of the same species." [GR:pj]
is_a: TO:0000112 ! disease resistance
[Term]
id: TO:0002704
name: Meloidogyne incognita resistance
def: "Causal agent\: Meloidogyne incognita. Symptom\: resistant to damage caused by the pathogen Meloidogyne incognita (root knot nematode). It produces characteristic galls (swellings) on roots." [GR:pj]
is_a: TO:0000384 ! nematode damage resistance
[Term]
id: TO:0002705
name: cucurbit downy mildew resistance
def: "Causal agent\: Pseudoperonospora cubensis. It causes the downy mildew disease in cucurbits." [GR:pj]
is_a: TO:0000439 ! fungal disease resistance
[Term]
id: TO:0002706
name: Meloidogyne javanica resistance
def: "Causal agent\: Meloidogyne javanica. Symptom\: resistant to damage caused by the pathogen Meloidogyne javanica (root knot nematode). It produces characteristic galls (swellings) on roots." [GR:pj]
is_a: TO:0000384 ! nematode damage resistance
[Term]
id: TO:0002707
name: petiole color
def: "The color of the petiole." [GR:pj]
relationship: part_of TO:0000326 ! leaf color
[Term]
id: TO:0002708
name: xylem color
def: "The color of the xylem tissue." [GR:pj]
is_a: TO:0000470 ! vascular tissue related trait
[Term]
id: TO:0002709
name: phloem color
def: "The color of the phloem tissue." [GR:pj]
is_a: TO:0000470 ! vascular tissue related trait
[Term]
id: TO:0002710
name: root shape
def: "The shape of the plant root system." [GR:pj]
is_a: TO:0000043 ! root anatomy and morphology trait
[Term]
id: TO:0002711
name: total water soluble content
def: "The concentration of water soluble components in the plant as determined by refractive index. " [GR:pj]
is_a: TO:0000281 ! metabolite content related trait
Logged In: YES
user_id=1977565
Originator: YES
request: root cracking: Physical cracking of a storage root caused by
genetic or environmental factors, or by post-harvest handling
pj: Suggested definition: Physical cracking of a root caused by genetic or
environmental factors, or by post-harvest storage and handling of the root
part.
ds: Ok, this is fine.
request: total dissolved solids content: The concentration of water
soluble components in the plant as determined by refractive index. This
trait is usually highly correlated with total soluble sugar content
(TO:0000340)
pj:
-can we call it 'total water soluble content'.
-are you looking at fresh/dried tissue sample/whole plant.
ds: This is always in fresh tissue, in our case in carrot roots, but it is used for many crops, e.g. tomato fruits
'total water soluble content' is fine, but maybe we can add a note in the comment such as
" this is commonly also referred to as total dissolved solids"
request: seed spines:
request: bulb / clove/ etc.
we are discussing these two, and will let you know later
[Term]
id: TO:0020087
name: root cracking
def: "A trait measuring the extent of physical cracking of a root caused by genetic, environmental factors or by post-harvest storage and handling of the root or root part." [GR:pj]
is_a: TO:0000168 ! abiotic stress trait
created_by: jaiswalp
creation_date: 2011-08-19T03:44:21Z
[Term]
id: TO:0020088
name: total water soluble content
def: "A trait to measure the concentration of water soluble components in the plant as determined by refractive index." []
comment: This trait is usually highly correlated with total soluble sugar content (TO:0000340). Often determined in fresh tissue.
synonym: "total dissolved solids content" EXACT []
is_a: TO:0000281 ! metabolite content related trait
created_by: jaiswalp
creation_date: 2011-08-19T03:47:00Z