Just got a request from Sook Jung at GDR (http://www.rosaceae.org)
"What we are doing right now is associating QTLs with the terms in TO and creating new terms when necessary. Attached is the list of new terms that we need so far. I understand that it will take some time for the terms to be accepted as part of TO, but we'll need to use it right away so Stephen, our bioinformaticist, and I am thinking of storing the new terms as ATO (Augmented TO) in our database so that those terms can be easily identified when those get merged to TO. As Stephen, our bioinformaticist, suggested I'll be using OBOedit to add more terms."
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