You can subscribe to this list here.
2003 |
Jan
|
Feb
|
Mar
|
Apr
|
May
|
Jun
|
Jul
|
Aug
|
Sep
|
Oct
(1) |
Nov
|
Dec
|
---|---|---|---|---|---|---|---|---|---|---|---|---|
2004 |
Jan
|
Feb
(2) |
Mar
|
Apr
|
May
(1) |
Jun
|
Jul
|
Aug
(2) |
Sep
(7) |
Oct
|
Nov
|
Dec
(18) |
2005 |
Jan
(3) |
Feb
|
Mar
|
Apr
|
May
|
Jun
(2) |
Jul
(2) |
Aug
|
Sep
(2) |
Oct
(2) |
Nov
(1) |
Dec
(12) |
2006 |
Jan
(3) |
Feb
(5) |
Mar
(7) |
Apr
(2) |
May
(5) |
Jun
(3) |
Jul
(8) |
Aug
(34) |
Sep
(15) |
Oct
(19) |
Nov
(6) |
Dec
(37) |
2007 |
Jan
(36) |
Feb
(39) |
Mar
(26) |
Apr
(19) |
May
(13) |
Jun
(27) |
Jul
(18) |
Aug
(21) |
Sep
(12) |
Oct
(6) |
Nov
(38) |
Dec
(10) |
2008 |
Jan
(39) |
Feb
(21) |
Mar
(39) |
Apr
(5) |
May
(4) |
Jun
(9) |
Jul
(21) |
Aug
(7) |
Sep
(4) |
Oct
(3) |
Nov
(28) |
Dec
(25) |
2009 |
Jan
(14) |
Feb
(18) |
Mar
(8) |
Apr
(8) |
May
(3) |
Jun
(1) |
Jul
(2) |
Aug
(4) |
Sep
(3) |
Oct
(12) |
Nov
(22) |
Dec
(17) |
2010 |
Jan
(12) |
Feb
(5) |
Mar
(11) |
Apr
(13) |
May
(2) |
Jun
(10) |
Jul
(11) |
Aug
(46) |
Sep
(4) |
Oct
(13) |
Nov
(19) |
Dec
(68) |
2011 |
Jan
(1) |
Feb
(17) |
Mar
(5) |
Apr
(3) |
May
(12) |
Jun
(13) |
Jul
(7) |
Aug
(1) |
Sep
(3) |
Oct
(4) |
Nov
(2) |
Dec
(4) |
2012 |
Jan
(2) |
Feb
(17) |
Mar
(4) |
Apr
(5) |
May
(3) |
Jun
(2) |
Jul
(4) |
Aug
(2) |
Sep
(1) |
Oct
(6) |
Nov
(3) |
Dec
(2) |
2013 |
Jan
(6) |
Feb
(4) |
Mar
(4) |
Apr
(3) |
May
|
Jun
(8) |
Jul
(2) |
Aug
(3) |
Sep
(9) |
Oct
(3) |
Nov
|
Dec
|
2014 |
Jan
(2) |
Feb
(10) |
Mar
(3) |
Apr
(2) |
May
|
Jun
(1) |
Jul
(7) |
Aug
(6) |
Sep
(4) |
Oct
(1) |
Nov
(2) |
Dec
|
2015 |
Jan
(1) |
Feb
(1) |
Mar
(2) |
Apr
(2) |
May
(3) |
Jun
(3) |
Jul
|
Aug
(2) |
Sep
|
Oct
(2) |
Nov
|
Dec
|
2016 |
Jan
|
Feb
(3) |
Mar
(1) |
Apr
(1) |
May
(1) |
Jun
(2) |
Jul
(1) |
Aug
(1) |
Sep
|
Oct
|
Nov
(9) |
Dec
(1) |
2017 |
Jan
(1) |
Feb
(2) |
Mar
(7) |
Apr
(1) |
May
(1) |
Jun
(3) |
Jul
(2) |
Aug
|
Sep
|
Oct
|
Nov
|
Dec
|
From: Sebastian H. <pr...@in...> - 2017-07-20 08:29:12
|
***DEADLINE EXTENSION*** 2nd Call for Posters & Demos SEMANTiCS 2017 - The Linked Data Conference 13th International Conference on Semantic Systems Amsterdam, Netherlands September 11 -14, 2017 http://2017.semantics.cc For details please go to: https://2017.semantics.cc/calls Important Dates (Posters & Demos Track): *Submission Deadline: extended: July 25, 2017 (11:59 pm, Hawaii time) *Notification of Acceptance: August 10, 2017 (11:59 pm, Hawaii time) *Camera-Ready Paper: August 18, 2017 (11:59 pm, Hawaii time) As in the previous years, SEMANTiCS’17 proceedings will be published by ACM ICPS (pending) and CEUR WS proceedings. This year, SEMANTiCS features a special Data Science track, which is an opportunity to bring together researchers and practitioners interested in data science and its intersection with Linked Data to present their ideas and discuss the most important scientific, technical and socio-economical challenges of this emerging field. SEMANTiCS 2017 will especially welcome submissions for the following hot topics: *Metadata, Versioning and Data Quality Management *Semantics for Safety, Security & Privacy *Web Semantics, Linked (Open) Data & schema.org *Corporate Knowledge Graphs *Knowledge Integration and Language Technologies *Economics of Data, Data Services and Data Ecosystems Special Track (please check appropriate topic in submission system) *Data Science Following the success of previous years, we welcome any submissions related but not limited to the following ‘horizontal’ (research) and ‘vertical’ (industries) topics: Horizontals: *Enterprise Linked Data & Data Integration *Knowledge Discovery & Intelligent Search *Business Models, Governance & Data Strategies *Semantics in Big Data *Text Analytics *Data Portals & Knowledge Visualization *Semantic Information Management *Document Management & Content Management *Terminology, Thesaurus & Ontology Management *Smart Connectivity, Networking & Interlinking *Smart Data & Semantics in IoT *Semantics for IT Safety & Security *Semantic Rules, Policies & Licensing *Community, Social & Societal Aspects Data Science Special Track Horizontals: *Large-Scale Data Processing (stream processing, handling large-scale graphs) *Data Analytics (Machine Learning, Predictive Analytics, Network Analytics) *Communicating Data (Data Visualization, UX & Interaction Design, Crowdsourcing) *Cross-cutting Issues (Ethics, Privacy, Security, Provenance) Verticals: *Industry & Engineering *Life Sciences & Health Care *Public Administration *e-Science *Digital Humanities *Galleries, Libraries, Archives & Museums (GLAM) *Education & eLearning *Media & Data Journalism *Publishing, Marketing & Advertising *Tourism & Recreation *Financial & Insurance Industry *Telecommunication & Mobile Services *Sustainable Development: Climate, Water, Air, Ecology *Energy, Smart Homes & Smart Grids *Food, Agriculture & Farming *Safety, Security & Privacy *Transport, Environment & Geospatial Posters & Demos Track The Posters & Demonstrations Track invites innovative work in progress, late-breaking research and innovation results, and smaller contributions in all fields related to the broadly understood Semantic Web. These include submissions on innovative applications with impact on end users such as demos of solutions that users may test or that are yet in the conceptual phase, but are worth discussing, and also applications, use cases or pieces of code that may attract developers and potential research or business partners. This also concerns new data sets made publicly available. The informal setting of the Posters & Demonstrations Track encourages participants to present innovations to the research community, business users and find new partners or clients and engage in discussions about the presented work. Such discussions can be invaluable inputs for the future work of the presenters, while offering conference participants an effective way to broaden their knowledge of the emerging research trends and to network with other researchers. Poster and demo submissions should consist of a paper that describe the work, its contribution to the field or novelty aspects. Submissions must be original and must not have been submitted for publication elsewhere. Accepted papers will be published in HTML (RASH) in CEUR and, as such, the camera-ready version of the papers will be required in HTML, following the poster and demo guidelines (https://goo.gl/3BEpV7). Papers should be submitted through EasyChair (https://easychair.org/conferences/?conf=semantics2017 and should be less than 2200 words in length (equivalent to 4 pages), including the whole content of the paper. For the initial reviewing phase, authors may submit a PDF version of the paper following any layout. After acceptance, authors are required to submit the camera-ready in HTML (RASH). Submissions will be reviewed by experienced and knowledgeable researchers and practitioners; each submission will receive detailed feedback. For demos, we encourage authors to include links enabling the reviewers to test the application or review the component. For details please go to: https://2017.semantics.cc/calls |
From: Sebastian H. <pr...@in...> - 2017-07-14 13:54:58
|
Dear all, There are only two weeks left to benefit from the reduced registration fee for the SEMANTICS2017 <https://2017.semantics.cc/> conference in Amsterdam. *To get the discount, please register <https://2017.semantics.cc/prices>* *before July 1th, 2017* Looking forward to meeting you at the conference! Semantics Organizing Team |
From: Sebastian H. <pr...@in...> - 2017-06-29 09:29:37
|
Apologies for cross-posting Call for Posters & Demos SEMANTiCS 2017 - The Linked Data Conference 13th International Conference on Semantic Systems Amsterdam, Netherlands September 11 -14, 2017 http://2017.semantics.cc For details please go to: https://2017.semantics.cc/calls Important Dates (Posters & Demos Track): *Submission Deadline: July 10, 2017 (11:59 pm, Hawaii time) *Notification of Acceptance: August 10, 2017 (11:59 pm, Hawaii time) *Camera-Ready Paper: August 18, 2017 (11:59 pm, Hawaii time) As in the previous years, SEMANTiCS’17 proceedings will be published by ACM ICPS (pending) and CEUR WS proceedings. This year, SEMANTiCS features a special Data Science track, which is an opportunity to bring together researchers and practitioners interested in data science and its intersection with Linked Data to present their ideas and discuss the most important scientific, technical and socio-economical challenges of this emerging field. SEMANTiCS 2017 will especially welcome submissions for the following hot topics: *Metadata, Versioning and Data Quality Management *Semantics for Safety, Security & Privacy *Web Semantics, Linked (Open) Data & schema.org *Corporate Knowledge Graphs *Knowledge Integration and Language Technologies *Economics of Data, Data Services and Data Ecosystems Special Track (please check appropriate topic in submission system) *Data Science Following the success of previous years, we welcome any submissions related but not limited to the following ‘horizontal’ (research) and ‘vertical’ (industries) topics: Horizontals: *Enterprise Linked Data & Data Integration *Knowledge Discovery & Intelligent Search *Business Models, Governance & Data Strategies *Semantics in Big Data *Text Analytics *Data Portals & Knowledge Visualization *Semantic Information Management *Document Management & Content Management *Terminology, Thesaurus & Ontology Management *Smart Connectivity, Networking & Interlinking *Smart Data & Semantics in IoT *Semantics for IT Safety & Security *Semantic Rules, Policies & Licensing *Community, Social & Societal Aspects Data Science Special Track Horizontals: *Large-Scale Data Processing (stream processing, handling large-scale graphs) *Data Analytics (Machine Learning, Predictive Analytics, Network Analytics) *Communicating Data (Data Visualization, UX & Interaction Design, Crowdsourcing) *Cross-cutting Issues (Ethics, Privacy, Security, Provenance) Verticals: *Industry & Engineering *Life Sciences & Health Care *Public Administration *e-Science *Digital Humanities *Galleries, Libraries, Archives & Museums (GLAM) *Education & eLearning *Media & Data Journalism *Publishing, Marketing & Advertising *Tourism & Recreation *Financial & Insurance Industry *Telecommunication & Mobile Services *Sustainable Development: Climate, Water, Air, Ecology *Energy, Smart Homes & Smart Grids *Food, Agriculture & Farming *Safety, Security & Privacy *Transport, Environment & Geospatial Posters & Demos Track The Posters & Demonstrations Track invites innovative work in progress, late-breaking research and innovation results, and smaller contributions in all fields related to the broadly understood Semantic Web. These include submissions on innovative applications with impact on end users such as demos of solutions that users may test or that are yet in the conceptual phase, but are worth discussing, and also applications, use cases or pieces of code that may attract developers and potential research or business partners. This also concerns new data sets made publicly available. The informal setting of the Posters & Demonstrations Track encourages participants to present innovations to the research community, business users and find new partners or clients and engage in discussions about the presented work. Such discussions can be invaluable inputs for the future work of the presenters, while offering conference participants an effective way to broaden their knowledge of the emerging research trends and to network with other researchers. Poster and demo submissions should consist of a paper that describe the work, its contribution to the field or novelty aspects. Submissions must be original and must not have been submitted for publication elsewhere. Accepted papers will be published in HTML (RASH) in CEUR and, as such, the camera-ready version of the papers will be required in HTML, following the poster and demo guidelines (https://goo.gl/3BEpV7). Papers should be submitted through EasyChair (https://easychair.org/conferences/?conf=semantics2017 and should be less than 2200 words in length (equivalent to 4 pages), including the whole content of the paper. For the initial reviewing phase, authors may submit a PDF version of the paper following any layout. After acceptance, authors are required to submit the camera-ready in HTML (RASH). Submissions will be reviewed by experienced and knowledgeable researchers and practitioners; each submission will receive detailed feedback. For demos, we encourage authors to include links enabling the reviewers to test the application or review the component. For details please go to: https://2017.semantics.cc/calls |
From: Melissa H. <ha...@oh...> - 2017-06-20 18:51:19
|
Thanks for organizing us Chris! On Jun 19, 2017, at 3:14 PM, Chris Mungall <cjm...@lb...<mailto:cjm...@lb...>> wrote: Hi phenotype ontologists, I have created a new google group for us: https://groups.google.com/forum/#!forum/obo-phenotype Email: obo...@go...<mailto:obo...@go...> We are abandoning this list on sourceforge. To see the reasons why, consult this ticket: https://github.com/OBOFoundry/OBOFoundry.github.io/issues/435 Note I am unable to see the list of subscribers to this list, as sourceforge turned this feature off, so I am unable to auto-subscribe you. If you are the maintainer of a phenotype ontology I may add you automatically based on your contact info in the OBO registry. For everyone else, if you want to stay informed, you will have to subscribe yourself - this is easy to do if you go to https://groups.google.com/forum/#!forum/obo-phenotype and click "Apply to join group". I realize this list has been silent for a while, but there has been a lot of off-list activity, including: * shared OWL design patterns across OBO phenotype ontologies: https://github.com/obophenotype/upheno/tree/master/src/patterns * general good practice guidelines and SOPs for managing your phenotype ontology release process, QC etc * standard exchange formats for phenotype data: http://phenopackets.org<http://phenopackets.org/> * use of phenotype ontologies for annotating a variety of data in humans and MODs * portals for phenotype data, e.g. http://monarchinitiative.org<http://monarchinitiative.org/>, http://planteome.org<http://planteome.org/> Now is a good time to bring things back to a community forum. ------------------------------------------------------------------------------ Check out the vibrant tech community on one of the world's most engaging tech sites, Slashdot.org<http://slashdot.org>! http://sdm.link/slashdot_______________________________________________ Obo-phenotype mailing list Obo...@li...<mailto:Obo...@li...> https://lists.sourceforge.net/lists/listinfo/obo-phenotype Melissa Haendel, PhD Associate Professor Library & Dept. of Medical Informatics and Clinical Epidemiology ha...@oh...<mailto:ha...@oh...> 503-407-5970 www.monarchinitiative.org<http://www.monarchinitiative.org> Appointments: Shanez De Silva de...@oh...<mailto:de...@oh...> |
From: Chris M. <cjm...@lb...> - 2017-06-19 22:14:15
|
Hi phenotype ontologists, I have created a new google group for us: https://groups.google.com/forum/#!forum/obo-phenotype Email: obo...@go... We are abandoning this list on sourceforge. To see the reasons why, consult this ticket: https://github.com/OBOFoundry/OBOFoundry.github.io/issues/435 Note I am unable to see the list of subscribers to this list, as sourceforge turned this feature off, so I am unable to auto-subscribe you. If you are the maintainer of a phenotype ontology I may add you automatically based on your contact info in the OBO registry. For everyone else, **if you want to stay informed, you will have to subscribe yourself** - this is easy to do if you go to https://groups.google.com/forum/#!forum/obo-phenotype and click "Apply to join group". I realize this list has been silent for a while, but there has been a lot of off-list activity, including: - shared OWL design patterns across OBO phenotype ontologies: https://github.com/obophenotype/upheno/tree/master/src/patterns - general good practice guidelines and SOPs for managing your phenotype ontology release process, QC etc - standard exchange formats for phenotype data: http://phenopackets.org - use of phenotype ontologies for annotating a variety of data in humans and MODs - portals for phenotype data, e.g. http://monarchinitiative.org, http://planteome.org Now is a good time to bring things back to a community forum. |
From: Sebastian H. <pr...@in...> - 2017-05-18 07:26:46
|
**** DEADLINE EXTENSION**** Due to several requests the SEMANTiCS 2017 conference extends its submission deadlines. 3rd Call for Research & Innovation Papers SEMANTiCS 2017 - The Linked Data Conference 13th International Conference on Semantic Systems Amsterdam, Netherlands September 11 -14, 2017 http://2017.semantics.cc The Research & Innovation track at SEMANTiCS welcomes the submission of papers on novel scientific research and/or innovations relevant to the topics of the conference. Submissions must be original and must not have been submitted for publication elsewhere. Papers should follow the ACM ICPS guidelines for formatting (http://www.acm.org/sigs/publications/proceedings-templates) and must not exceed 8 pages in lenght for full papers and 4 pages for short papers, including references and optional appendices. Research & Innovation Papers are published within ACM ICP Series. Important Dates (Research & Innovation) * Abstract Submission Deadline: extended: May 31, 2017 (11:59 pm, Hawaii time) * Paper Submission Deadline: extended: June 7, 2017 (11:59 pm, Hawaii time) * Notification of Acceptance: July 3, 2017 (11:59 pm, Hawaii time) * Camera-Ready Paper: August 14, 2017 (11:59 pm, Hawaii time) For details please go to: https://2017.semantics.cc/calls or contact the Research and Innovation Chairs: Catherine Faron Zucker, faron [@] i3s.unice.fr, Université Nice Sophia Antipolis Rinke Hoekstra, rinke.hoekstra [@] vu.nl, Vrije Universiteit Amsterdam/University of Amsterdam As in the previous years, SEMANTiCS’17 proceedings will be published by ACM ICP (pending). SEMANTiCS 2017 will especially welcome submissions for the following hot topics: * Data Science (special track, see below) * Web Semantics, Linked (Open) Data & schema.org * Corporate Knowledge Graphs * Knowledge Integration and Language Technologies * Data Quality Management * Economics of Data, Data Services and Data Ecosystems Following the success of previous years, the ‘horizontals’ (research) and ‘verticals’ (industries) below are of interest for the conference: Horizontals * Enterprise Linked Data & Data Integration * Knowledge Discovery & Intelligent Search * Business Models, Governance & Data Strategies * Semantics in Big Data * Text Analytics * Data Portals & Knowledge Visualization * Semantic Information Management * Document Management & Content Management * Terminology, Thesaurus & Ontology Management * Smart Connectivity, Networking & Interlinking * Smart Data & Semantics in IoT * Semantics for IT Safety & Security * Semantic Rules, Policies & Licensing * Community, Social & Societal Aspects Data Science Special Track Horizontals * Large-Scale Data Processing (stream processing, handling large-scale graphs) * Data Analytics (Machine Learning, Predictive Analytics, Network Analytics) * Communicating Data (Data Visualization, UX & Interaction Design, Crowdsourcing) * Cross-cutting Issues (Ethics, Privacy, Security, Provenance) Verticals * Industry & Engineering * Life Sciences & Health Care * Public Administration * e-Science * Digital Humanities * Galleries, Libraries, Archives & Museums (GLAM) * Education & eLearning * Media & Data Journalism * Publishing, Marketing & Advertising * Tourism & Recreation * Financial & Insurance Industry * Telecommunication & Mobile Services * Sustainable Development: Climate, Water, Air, Ecology * Energy, Smart Homes & Smart Grids * Food, Agriculture & Farming * Safety, Security & Privacy * Transport, Environment & Geospatial For details please go to: https://2017.semantics.cc/calls |
From: Sebastian H. <pr...@in...> - 2017-04-13 07:47:12
|
Apologies for cross-posting Call for Papers, Posters & Workshops and Tutorials SEMANTiCS 2017 - The Linked Data Conference 13th International Conference on Semantic Systems Amsterdam, Netherlands September 11 -14, 2017 http://2017.semantics.cc For details please go to: https://2017.semantics.cc/calls Important Dates (Research & Innovation Track): *Abstract Submission Deadline:May 17, 2017 (11:59 pm, Hawaii time) *Paper Submission Deadline: May 24, 2017 (11:59 pm, Hawaii time) *Notification of Acceptance: July 3, 2017 (11:59 pm, Hawaii time) *Camera-Ready Paper: August 14, 2017 (11:59 pm, Hawaii time) Important Dates (Posters & Demos Track): *Submission Deadline: July 10, 2017 (11:59 pm, Hawaii time) *Notification of Acceptance: August 10, 2017 (11:59 pm, Hawaii time) *Camera-Ready Paper: August 18, 2017 (11:59 pm, Hawaii time) Important Dates (Workshops & Tutorials): *Proposals for Tutorials and Workshops without Call for Papers: June 30, 2017 (23:59 Hawaii Time) *Notification of Acceptance: April 13, 2017 (23:59 Hawaii Time) *Workshop Website/Call for Papers Online: April 30, 2017 (23:59 Hawaii Time) *Camera-Ready Proceedings: September 4, 2017 (23:59 Hawaii Time) *SEMANTiCS 2017 Workshop & Tutorial Days: September 11 and 14, 2017 Important Dates (Industry & Use Case Presentations): *Submission Deadline June 23, 2017 *Notification of Acceptance July 4, 2017 *Presentation Ready August 15, 2017 As in the previous years, SEMANTiCS’17 proceedings will be published by ACM ICPS (pending) and CEUR WS proceedings. SEMANTiCS 2017 will especially welcome submissions for the following hot topics: *Data Science (special track, see below) *Web Semantics, Linked (Open) Data & schema.org *Corporate Knowledge Graphs *Knowledge Integration and Language Technologies *Data Quality Management *Economics of Data, Data Services and Data Ecosystems Following the success of previous years, the ‘horizontals’ (research) and ‘verticals’ (industries) below are of interest for the conference: Horizontals: *Enterprise Linked Data & Data Integration *Knowledge Discovery & Intelligent Search *Business Models, Governance & Data Strategies *Semantics in Big Data *Text Analytics *Data Portals & Knowledge Visualization *Semantic Information Management *Document Management & Content Management *Terminology, Thesaurus & Ontology Management *Smart Connectivity, Networking & Interlinking *Smart Data & Semantics in IoT *Semantics for IT Safety & Security *Semantic Rules, Policies & Licensing *Community, Social & Societal Aspects Data Science Special Track Horizontals: *Large-Scale Data Processing (stream processing, handling large-scale graphs) *Data Analytics (Machine Learning, Predictive Analytics, Network Analytics) *Communicating Data (Data Visualization, UX & Interaction Design, Crowdsourcing) *Cross-cutting Issues (Ethics, Privacy, Security, Provenance) Verticals: *Industry & Engineering *Life Sciences & Health Care *Public Administration *e-Science *Digital Humanities *Galleries, Libraries, Archives & Museums (GLAM) *Education & eLearning *Media & Data Journalism *Publishing, Marketing & Advertising *Tourism & Recreation *Financial & Insurance Industry *Telecommunication & Mobile Services *Sustainable Development: Climate, Water, Air, Ecology *Energy, Smart Homes & Smart Grids *Food, Agriculture & Farming *Safety, Security & Privacy *Transport, Environment & Geospatial |
From: Sebastian H. <pr...@in...> - 2017-03-13 08:28:09
|
Apologies for cross-posting Call for Papers, Posters & Workshops and Tutorials SEMANTiCS 2017 - The Linked Data Conference 13th International Conference on Semantic Systems Amsterdam, Netherlands September 11 -14, 2017 http://2017.semantics.cc For details please go to: https://2017.semantics.cc/calls Important Dates (Research & Innovation Track): *Abstract Submission Deadline: May 17, 2017 (11:59 pm, Hawaii time) *Paper Submission Deadline: May 24, 2017 (11:59 pm, Hawaii time) *Notification of Acceptance: July 3, 2017 (11:59 pm, Hawaii time) *Camera-Ready Paper: August 14, 2017 (11:59 pm, Hawaii time) Important Dates (Posters & Demos Track): *Submission Deadline: July 10, 2017 (11:59 pm, Hawaii time) *Notification of Acceptance: August 10, 2017 (11:59 pm, Hawaii time) *Camera-Ready Paper: August 18, 2017 (11:59 pm, Hawaii time) Important Dates (Workshops & Tutorials): *Proposals for Workshops with Call for Papers: March 31, 2017 (23:59 Hawaii Time) *Proposals for Tutorials and Workshops without Call for Papers: June 30, 2017 (23:59 Hawaii Time) *Notification of Acceptance: April 13, 2017 (23:59 Hawaii Time) *Workshop Website/Call for Papers Online: April 30, 2017 (23:59 Hawaii Time) *Camera-Ready Proceedings: September 4, 2017 (23:59 Hawaii Time) *SEMANTiCS 2017 Workshop & Tutorial Days: September 11 and 14, 2017 Important Dates (Industry & Use Case Presentations): *Submission Deadline: June 23, 2017 *Notification of Acceptance: July 4, 2017 *Presentation Ready: August 15, 2017 As in the previous years, SEMANTiCS’17 proceedings will be published by ACM ICPS (pending) and CEUR WS proceedings. SEMANTiCS 2017 will especially welcome submissions for the following hot topics: *Data Science (special track, see below) *Web Semantics, Linked (Open) Data & schema.org *Corporate Knowledge Graphs *Knowledge Integration and Language Technologies *Data Quality Management *Economics of Data, Data Services and Data Ecosystems Following the success of previous years, the ‘horizontals’ (research) and ‘verticals’ (industries) below are of interest for the conference: Horizontals: *Enterprise Linked Data & Data Integration *Knowledge Discovery & Intelligent Search *Business Models, Governance & Data Strategies *Semantics in Big Data *Text Analytics *Data Portals & Knowledge Visualization *Semantic Information Management *Document Management & Content Management *Terminology, Thesaurus & Ontology Management *Smart Connectivity, Networking & Interlinking *Smart Data & Semantics in IoT *Semantics for IT Safety & Security *Semantic Rules, Policies & Licensing *Community, Social & Societal Aspects Data Science Special Track Horizontals: *Large-Scale Data Processing (stream processing, handling large-scale graphs) *Data Analytics (Machine Learning, Predictive Analytics, Network Analytics) *Communicating Data (Data Visualization, UX & Interaction Design, Crowdsourcing) *Cross-cutting Issues (Ethics, Privacy, Security, Provenance) Verticals: *Industry & Engineering *Life Sciences & Health Care *Public Administration *e-Science *Digital Humanities *Galleries, Libraries, Archives & Museums (GLAM) *Education & eLearning *Media & Data Journalism *Publishing, Marketing & Advertising *Tourism & Recreation *Financial & Insurance Industry *Telecommunication & Mobile Services *Sustainable Development: Climate, Water, Air, Ecology *Energy, Smart Homes & Smart Grids *Food, Agriculture & Farming *Safety, Security & Privacy *Transport, Environment & Geospatial |
From: Melissa H. <ha...@oh...> - 2017-03-08 13:27:20
|
yep, this is related to the need for not just opposites but things on a continuum being related. Same for aplastic vs. hypoplastic. The relationship is probably not one of subclassing, as it is a matter of degree. On Mar 8, 2017, at 6:47 AM, Dr Midori A. Harris <ma...@ca...<mailto:ma...@ca...>> wrote: On Wed, 8 Mar 2017, Köhler, Sebastian wrote: Hi, My fellow PomBase curators have returned to this outstanding question, so I thought it might be fodder for the re-awakening obo-phenotype list. As far as I know, this ticket still has the latest thinking, although it hasn't seen any activity for two years: https://github.com/pato-ontology/pato/issues/46 We would still like a resolution, especially since I'm not sure FYPO is even up to date with its design patterns in this area. We'll be happiest if we end up with a design pattern that lets "abolished process" fall under "decreased occurrence of a process" (or the grounds that not happening at all is indeed happening less than in a reference organism for the phenotypes we're modeling), but any clarification will be better than our present situation. I think for HPO we ÿÿcurrently" decided to use ÿÿlacks processual partsÿÿ, but now I saw the ticket and I am not sure anymore. Here is a summary of our current thoughts on design patterns (HP/MP-centric): https://docs.google.com/document/d/10NCd9jXGXA4BETSBxdbVGfDFM2w4gAIbY6vpm4ERTBo/edit# We're using "lacking processual parts" for our absent-in-mutant processes, but my colleagues are a bit unsatisfied because that doesn't get classified under "decreased occurrence" (unless I were to attempt it manually - run away!), which they find counter-intuitive. That's the issue I hope to address. And here is the current process pattern: https://github.com/obophenotype/upheno/blob/master/src/patterns/missingProcess.yaml Thanks for the links. I'll have a look soon. Midori Best, Seb Apologies to those who receive multiple coipes of this via two lists. Thanks, Midori Midori A. Harris, PhD Database Curator, PomBase Department of Biochemistry University of Cambridge Cambridge, UK ma...@ca...<mailto:ma...@ca...> On Tue, 3 Mar 2015, Chris Mungall wrote: I don't have strong opinions on what the best lexical label is. but see latest comments on the tracker, there's already some terminological confusion in pato here. On 3 Mar 2015, at 15:29, Robinson, Peter wrote: That only makes sense if we mean "abolished enyzme activity"; but I do not think that the naked worked "abolished" necessarily has this connotation? -Peter Dr. med. Peter N. Robinson, MSc. Professor of Medical Genomics Professor in the Bioinformatics Division of the Department of Mathematics and Computer Science of the Freie Universität Berlin Institut für Medizinische Genetik und Humangenetik Charité - Universitätsmedizin Berlin Augustenburger Platz 1 13353 Berlin Germany +4930 450566006 Mobile: 0160 93769872 pet...@ch... http://compbio.charite.de http://www.human-phenotype-ontology.org Introduction to Bio-Ontologies: http://www.crcpress.com/product/isbn/9781439836651 I have learned from my mistakes, and I am sure I can repeat them exactly ORCID ID:http://orcid.org/0000-0002-0736-9199 Scopus Author ID 7403719646 Appointment request: http://doodle.com/pnrobinson ________________________________________ Von: phe...@go... [phe...@go...] im Auftrag von Dr Midori A. Harris [ma...@ca...] Gesendet: Dienstag, 3. März 2015 18:20 An: Cynthia Smith Cc: phe...@go... Betreff: Re: Making abolished analogous to absent would be great for me (FYPO) m On Tue, 3 Mar 2015, Cynthia Smith wrote: makes sense to me On 3/3/15 10:29 AM, "Chris Mungall" <cjm...@lb...> wrote: Shall we put abolished under 'decreased efficacy'? https://github.com/gkoutos/pato/issues/46#issuecomment-76961544 I think so -- You received this message because you are subscribed to the Google Groups "phenotype-ontologies-editors" group. To unsubscribe from this group and stop receiving emails from it, send an email to phe...@go.... For more options, visit https://groups.google.com/d/optout. The information in this email, including attachments, may be confidential and is intended solely for the addressee(s). If you believe you received this email by mistake, please notify the sender by return email as soon as possible. -- You received this message because you are subscribed to the Google Groups "phenotype-ontologies-editors" group. To unsubscribe from this group and stop receiving emails from it, send an email to phe...@go.... For more options, visit https://groups.google.com/d/optout. -- You received this message because you are subscribed to the Google Groups "phenotype-ontologies-editors" group. To unsubscribe from this group and stop receiving emails from it, send an email to phe...@go.... For more options, visit https://groups.google.com/d/optout. -- You received this message because you are subscribed to the Google Groups "phenotype-ontologies-editors" group. To unsubscribe from this group and stop receiving emails from it, send an email to phe...@go.... For more options, visit https://groups.google.com/d/optout. -- Dr. rer. nat. Sebastian Köhler NeuroCure Cluster of Excellence Charité - Universitätsmedizin Berlin Charitéplatz 1 D-10117 Berlin Germany email: dr....@gm...<mailto:dr....@gm...> web: http://drseb.github.io Melissa Haendel, PhD Associate Professor Library & Dept. of Medical Informatics and Clinical Epidemiology ha...@oh...<mailto:ha...@oh...> 503-407-5970 www.monarchinitiative.org<http://www.monarchinitiative.org> Appointments: Shanez De Silva de...@oh...<mailto:de...@oh...> |
From: Dr M. A. H. <ma...@ca...> - 2017-03-08 11:48:08
|
On Wed, 8 Mar 2017, Köhler, Sebastian wrote: > Hi, > >> My fellow PomBase curators have returned to this outstanding question, so I thought it might be fodder for the re-awakening obo-phenotype list. >> >> As far as I know, this ticket still has the latest thinking, although it hasn't seen any activity for two years: >> >> https://github.com/pato-ontology/pato/issues/46 >> >> We would still like a resolution, especially since I'm not sure FYPO is even up to date with its design patterns in this area. >> >> We'll be happiest if we end up with a design pattern that lets "abolished process" fall under "decreased occurrence of a process" (or the grounds that not happening at all is indeed happening less than in a reference organism for the phenotypes we're modeling), but any clarification will be better than our present situation. > > I think for HPO we ÿÿcurrently" decided to use ÿÿlacks processual partsÿÿ, but now I saw the ticket and I am not sure anymore. Here is a summary of our current thoughts on design patterns (HP/MP-centric): https://docs.google.com/document/d/10NCd9jXGXA4BETSBxdbVGfDFM2w4gAIbY6vpm4ERTBo/edit# We're using "lacking processual parts" for our absent-in-mutant processes, but my colleagues are a bit unsatisfied because that doesn't get classified under "decreased occurrence" (unless I were to attempt it manually - run away!), which they find counter-intuitive. That's the issue I hope to address. > And here is the current process pattern: https://github.com/obophenotype/upheno/blob/master/src/patterns/missingProcess.yaml Thanks for the links. I'll have a look soon. Midori > Best, > Seb > >> >> Apologies to those who receive multiple coipes of this via two lists. >> >> Thanks, >> Midori >> >> >> Midori A. Harris, PhD >> Database Curator, PomBase >> Department of Biochemistry >> University of Cambridge >> Cambridge, UK >> ma...@ca... >> >> >> On Tue, 3 Mar 2015, Chris Mungall wrote: >> >>> I don't have strong opinions on what the best lexical label is. but see latest comments on the tracker, there's already some terminological confusion in pato here. >>> >>> On 3 Mar 2015, at 15:29, Robinson, Peter wrote: >>> >>>> That only makes sense if we mean "abolished enyzme activity"; but I do not think that the naked worked "abolished" necessarily has this connotation? >>>> -Peter >>>> Dr. med. Peter N. Robinson, MSc. >>>> Professor of Medical Genomics >>>> Professor in the Bioinformatics Division of the Department of Mathematics and Computer Science of the Freie Universität Berlin >>>> Institut für Medizinische Genetik und Humangenetik >>>> Charité - Universitätsmedizin Berlin >>>> Augustenburger Platz 1 >>>> 13353 Berlin >>>> Germany >>>> +4930 450566006 >>>> Mobile: 0160 93769872 >>>> pet...@ch... >>>> http://compbio.charite.de >>>> http://www.human-phenotype-ontology.org >>>> Introduction to Bio-Ontologies: http://www.crcpress.com/product/isbn/9781439836651 >>>> I have learned from my mistakes, and I am sure I can repeat them exactly >>>> ORCID ID:http://orcid.org/0000-0002-0736-9199 >>>> Scopus Author ID 7403719646 >>>> Appointment request: http://doodle.com/pnrobinson >>>> ________________________________________ >>>> Von: phe...@go... [phe...@go...] im Auftrag von Dr Midori A. Harris [ma...@ca...] >>>> Gesendet: Dienstag, 3. März 2015 18:20 >>>> An: Cynthia Smith >>>> Cc: phe...@go... >>>> Betreff: Re: Making abolished analogous to absent >>>> would be great for me (FYPO) >>>> m >>>> On Tue, 3 Mar 2015, Cynthia Smith wrote: >>>>> makes sense to me >>>>> On 3/3/15 10:29 AM, "Chris Mungall" <cjm...@lb...> wrote: >>>>>> Shall we put abolished under 'decreased efficacy'? >>>>>> https://github.com/gkoutos/pato/issues/46#issuecomment-76961544 >>>>>> I think so >>>>>> -- >>>>>> You received this message because you are subscribed to the Google Groups >>>>>> "phenotype-ontologies-editors" group. >>>>>> To unsubscribe from this group and stop receiving emails from it, send an >>>>>> email to phe...@go.... >>>>>> For more options, visit https://groups.google.com/d/optout. >>>>> The information in this email, including attachments, may be confidential and is intended solely for the addressee(s). If you believe you received this email by mistake, please notify the sender by return email as soon as possible. >>>>> -- >>>>> You received this message because you are subscribed to the Google Groups "phenotype-ontologies-editors" group. >>>>> To unsubscribe from this group and stop receiving emails from it, send an email to phe...@go.... >>>>> For more options, visit https://groups.google.com/d/optout. >>>> -- >>>> You received this message because you are subscribed to the Google Groups "phenotype-ontologies-editors" group. >>>> To unsubscribe from this group and stop receiving emails from it, send an email to phe...@go.... >>>> For more options, visit https://groups.google.com/d/optout. >>> >>> -- >>> You received this message because you are subscribed to the Google Groups "phenotype-ontologies-editors" group. >>> To unsubscribe from this group and stop receiving emails from it, send an email to phe...@go.... >>> For more options, visit https://groups.google.com/d/optout. > > > -- > Dr. rer. nat. Sebastian Köhler > NeuroCure Cluster of Excellence > Charité - Universitätsmedizin Berlin > Charitéplatz 1 > D-10117 Berlin > Germany > email: dr....@gm... > web: http://drseb.github.io > > |
From: Dr M. A. H. <ma...@ca...> - 2017-03-08 11:38:53
|
Hi, My fellow PomBase curators have returned to this outstanding question, so I thought it might be fodder for the re-awakening obo-phenotype list. As far as I know, this ticket still has the latest thinking, although it hasn't seen any activity for two years: https://github.com/pato-ontology/pato/issues/46 We would still like a resolution, especially since I'm not sure FYPO is even up to date with its design patterns in this area. We'll be happiest if we end up with a design pattern that lets "abolished process" fall under "decreased occurrence of a process" (or the grounds that not happening at all is indeed happening less than in a reference organism for the phenotypes we're modeling), but any clarification will be better than our present situation. Apologies to those who receive multiple coipes of this via two lists. Thanks, Midori Midori A. Harris, PhD Database Curator, PomBase Department of Biochemistry University of Cambridge Cambridge, UK ma...@ca... On Tue, 3 Mar 2015, Chris Mungall wrote: > I don't have strong opinions on what the best lexical label is. but see > latest comments on the tracker, there's already some terminological confusion > in pato here. > > On 3 Mar 2015, at 15:29, Robinson, Peter wrote: > >> That only makes sense if we mean "abolished enyzme activity"; but I do not >> think that the naked worked "abolished" necessarily has this connotation? >> -Peter >> >> Dr. med. Peter N. Robinson, MSc. >> Professor of Medical Genomics >> Professor in the Bioinformatics Division of the Department of Mathematics >> and Computer Science of the Freie Universität Berlin >> Institut für Medizinische Genetik und Humangenetik >> Charité - Universitätsmedizin Berlin >> Augustenburger Platz 1 >> 13353 Berlin >> Germany >> +4930 450566006 >> Mobile: 0160 93769872 >> pet...@ch... >> http://compbio.charite.de >> http://www.human-phenotype-ontology.org >> Introduction to Bio-Ontologies: >> http://www.crcpress.com/product/isbn/9781439836651 >> I have learned from my mistakes, and I am sure I can repeat them exactly >> ORCID ID:http://orcid.org/0000-0002-0736-9199 >> Scopus Author ID 7403719646 >> Appointment request: http://doodle.com/pnrobinson >> ________________________________________ >> Von: phe...@go... >> [phe...@go...] im Auftrag von Dr Midori A. >> Harris [ma...@ca...] >> Gesendet: Dienstag, 3. März 2015 18:20 >> An: Cynthia Smith >> Cc: phe...@go... >> Betreff: Re: Making abolished analogous to absent >> >> would be great for me (FYPO) >> >> m >> >> On Tue, 3 Mar 2015, Cynthia Smith wrote: >> >>> makes sense to me >>> >>> On 3/3/15 10:29 AM, "Chris Mungall" <cjm...@lb...> wrote: >>> >>>> Shall we put abolished under 'decreased efficacy'? >>>> https://github.com/gkoutos/pato/issues/46#issuecomment-76961544 >>>> >>>> I think so >>>> >>>> -- >>>> You received this message because you are subscribed to the Google Groups >>>> "phenotype-ontologies-editors" group. >>>> To unsubscribe from this group and stop receiving emails from it, send an >>>> email to phe...@go.... >>>> For more options, visit https://groups.google.com/d/optout. >>> >>> >>> The information in this email, including attachments, may be confidential >>> and is intended solely for the addressee(s). If you believe you received >>> this email by mistake, please notify the sender by return email as soon as >>> possible. >>> >>> -- >>> You received this message because you are subscribed to the Google Groups >>> "phenotype-ontologies-editors" group. >>> To unsubscribe from this group and stop receiving emails from it, send an >>> email to phe...@go.... >>> For more options, visit https://groups.google.com/d/optout. >>> >> >> -- >> You received this message because you are subscribed to the Google Groups >> "phenotype-ontologies-editors" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to phe...@go.... >> For more options, visit https://groups.google.com/d/optout. > > -- > You received this message because you are subscribed to the Google Groups > "phenotype-ontologies-editors" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to phe...@go.... > For more options, visit https://groups.google.com/d/optout. > |
From: Köhler, S. <seb...@ch...> - 2017-03-08 11:38:15
|
Hi, > My fellow PomBase curators have returned to this outstanding question, so I thought it might be fodder for the re-awakening obo-phenotype list. > > As far as I know, this ticket still has the latest thinking, although it hasn't seen any activity for two years: > > https://github.com/pato-ontology/pato/issues/46 > > We would still like a resolution, especially since I'm not sure FYPO is even up to date with its design patterns in this area. > > We'll be happiest if we end up with a design pattern that lets "abolished process" fall under "decreased occurrence of a process" (or the grounds that not happening at all is indeed happening less than in a reference organism for the phenotypes we're modeling), but any clarification will be better than our present situation. I think for HPO we “currently" decided to use “lacks processual parts”, but now I saw the ticket and I am not sure anymore. Here is a summary of our current thoughts on design patterns (HP/MP-centric): https://docs.google.com/document/d/10NCd9jXGXA4BETSBxdbVGfDFM2w4gAIbY6vpm4ERTBo/edit# And here is the current process pattern: https://github.com/obophenotype/upheno/blob/master/src/patterns/missingProcess.yaml Best, Seb > > Apologies to those who receive multiple coipes of this via two lists. > > Thanks, > Midori > > > Midori A. Harris, PhD > Database Curator, PomBase > Department of Biochemistry > University of Cambridge > Cambridge, UK > ma...@ca... > > > On Tue, 3 Mar 2015, Chris Mungall wrote: > >> I don't have strong opinions on what the best lexical label is. but see latest comments on the tracker, there's already some terminological confusion in pato here. >> >> On 3 Mar 2015, at 15:29, Robinson, Peter wrote: >> >>> That only makes sense if we mean "abolished enyzme activity"; but I do not think that the naked worked "abolished" necessarily has this connotation? >>> -Peter >>> Dr. med. Peter N. Robinson, MSc. >>> Professor of Medical Genomics >>> Professor in the Bioinformatics Division of the Department of Mathematics and Computer Science of the Freie Universität Berlin >>> Institut für Medizinische Genetik und Humangenetik >>> Charité - Universitätsmedizin Berlin >>> Augustenburger Platz 1 >>> 13353 Berlin >>> Germany >>> +4930 450566006 >>> Mobile: 0160 93769872 >>> pet...@ch... >>> http://compbio.charite.de >>> http://www.human-phenotype-ontology.org >>> Introduction to Bio-Ontologies: http://www.crcpress.com/product/isbn/9781439836651 >>> I have learned from my mistakes, and I am sure I can repeat them exactly >>> ORCID ID:http://orcid.org/0000-0002-0736-9199 >>> Scopus Author ID 7403719646 >>> Appointment request: http://doodle.com/pnrobinson >>> ________________________________________ >>> Von: phe...@go... [phe...@go...] im Auftrag von Dr Midori A. Harris [ma...@ca...] >>> Gesendet: Dienstag, 3. März 2015 18:20 >>> An: Cynthia Smith >>> Cc: phe...@go... >>> Betreff: Re: Making abolished analogous to absent >>> would be great for me (FYPO) >>> m >>> On Tue, 3 Mar 2015, Cynthia Smith wrote: >>>> makes sense to me >>>> On 3/3/15 10:29 AM, "Chris Mungall" <cjm...@lb...> wrote: >>>>> Shall we put abolished under 'decreased efficacy'? >>>>> https://github.com/gkoutos/pato/issues/46#issuecomment-76961544 >>>>> I think so >>>>> -- >>>>> You received this message because you are subscribed to the Google Groups >>>>> "phenotype-ontologies-editors" group. >>>>> To unsubscribe from this group and stop receiving emails from it, send an >>>>> email to phe...@go.... >>>>> For more options, visit https://groups.google.com/d/optout. >>>> The information in this email, including attachments, may be confidential and is intended solely for the addressee(s). If you believe you received this email by mistake, please notify the sender by return email as soon as possible. >>>> -- >>>> You received this message because you are subscribed to the Google Groups "phenotype-ontologies-editors" group. >>>> To unsubscribe from this group and stop receiving emails from it, send an email to phe...@go.... >>>> For more options, visit https://groups.google.com/d/optout. >>> -- >>> You received this message because you are subscribed to the Google Groups "phenotype-ontologies-editors" group. >>> To unsubscribe from this group and stop receiving emails from it, send an email to phe...@go.... >>> For more options, visit https://groups.google.com/d/optout. >> >> -- >> You received this message because you are subscribed to the Google Groups "phenotype-ontologies-editors" group. >> To unsubscribe from this group and stop receiving emails from it, send an email to phe...@go.... >> For more options, visit https://groups.google.com/d/optout. -- Dr. rer. nat. Sebastian Köhler NeuroCure Cluster of Excellence Charité - Universitätsmedizin Berlin Charitéplatz 1 D-10117 Berlin Germany email: dr....@gm... web: http://drseb.github.io |
From: Chris M. <cjm...@lb...> - 2017-03-07 06:56:59
|
The obo-phenotype list has been a bit dormant for a while. There has been a lot of work in the last few years on topics like unifying ontology design patterns for phenotype ontologies, but it has tended to take place amongst smaller groups and other communication channels. I think it's time to bring together some of the groups doing this in different species, share best practice, ontology tool tips, etc. If you aren't already signed up, the info is here: https://lists.sourceforge.net/lists/listinfo/obo-phenotype We'll likely start having more announcements and discussions there over the next few weeks. If there is interest, we could also try a gitter or slack channel as well. With gitter it's easy to set up a channel for repos on github, and most ontologies are on github now. Here is a gitter for phenotypes: https://gitter.im/obophenotype But if you're not into this new fangled chat business just sign up for the list and we'll make sure things are posted there. |
From: Sebastian H. <pr...@in...> - 2017-03-03 14:21:37
|
*DBpedia Open Text Extraction Challenge - TextExt* Website: http://wiki.dbpedia.org/textext *_Disclaimer: The call is under constant development, please refer to the news section. We also acknowledge the initial engineering effort and will be lenient on technical requirements for the first submissions and will focus evaluation on the extracted triples and allow late submissions, if they are coordinated with us_*. Background DBpedia and Wikidata currently focus primarily on representing factual knowledge as contained in Wikipedia infoboxes. A vast amount of information, however, is contained in the unstructured Wikipedia article texts. With the DBpedia Open Text Extraction Challenge, we aim to spur knowledge extraction from Wikipedia article texts in order to dramatically broaden and deepen the amount of structured DBpedia/Wikipedia data and provide a platform for benchmarking various extraction tools. Mission Wikipedia has become the ubiquitous source of knowledge for the world enabling humans to lookup definitions, quickly become familiar with new topics, read up background infos for news event and many more - even settling coffee house arguments via a quick mobile research. The mission of DBpedia in general is to harvest Wikipedia’s knowledge, refine and structure it and then disseminate it on the web - in a free and open manner - for IT users and businesses. News and next events Twitter: Follow @dbpedia <https://twitter.com/dbpedia>, Hashtag: #dbpedianlp <https://twitter.com/search?f=tweets&q=%23dbpedianlp&src=typd> * LDK <http://ldk2017.org/> conference joined the challenge (Deadline March 19th and April 24th) * SEMANTiCS <http://2017.semantics.cc/> joined the challenge (Deadline June 11th and July 17th) * Feb 20th, 2017: Full example added to this website * March 1st, 2017: Docker image (beta) https://github.com/NLP2RDF/DBpediaOpenDBpediaTextExtractionChallenge Coming soon: * beginning of March: full example within the docker image * beginning of March: DBpedia full article text and tables (currently only abstracts) http://downloads.dbpedia.org/2016-10/core-i18n/ Methodology The DBpedia Open Text Extraction Challenge differs significantly from other challenges in the language technology and other areas in that it is not a one time call, but a continuous growing and expanding challenge with the focus to *sustainably* advance the state of the art and transcend boundaries in a *systematic* way. The DBpedia Association and the people behind this challenge are committed to provide the necessary infrastructure and drive the challenge for an indefinite time as well as potentially extend the challenge beyond Wikipedia. We provide the extracted and cleaned full text for all Wikipedia articles from 9 different languages in regular intervals for download and as Docker in the machine readable NIF-RDF <http://persistence.uni-leipzig.org/nlp2rdf/> format (Example for Barrack Obama in English <https://github.com/NLP2RDF/DBpediaOpenDBpediaTextExtractionChallenge/blob/master/BO.ttl>). Challenge participants are asked to wrap their NLP and extraction engines in Docker images and submit them to us. We will run participants’ tools in regular intervals in order to extract: 1. Facts, relations, events, terminology, ontologies as RDF triples (Triple track) 2. Useful NLP annotations such as pos-tags, dependencies, co-reference (Annotation track) We allow submissions 2 months prior to selected conferences (currently _http://ldk2017.org/_ and _http://2017.semantics.cc/_ ). Participants that fulfil the technical requirements and provide a sufficient description will be able to present at the conference and be included in the yearly proceedings. *Each conference, the challenge committee will select a winner among challenge participants, which will receive 1000€. * Results Every December, we will publish a summary article and proceedings of participants’ submissions at _http://ceur-ws.org/_ . The first proceedings are planned to be published in Dec 2017. We will try to briefly summarize any intermediate progress online in this section. Acknowledgements We would like to thank the Computer Center of Leipzig University to give us access to their 6TB RAM server Sirius to run all extraction tools. The project was created with the support of the H2020 EU project HOBBIT <https://project-hobbit.eu/> (GA-688227) and ALIGNED <http://aligned-project.eu/> (GA-644055) as well as the BMWi project Smart Data Web <http://smartdataweb.de/> (GA-01MD15010B). Challenge Committee * Sebastian Hellmann, AKSW, DBpedia Association, KILT Competence Center, InfAI, Leipzig * Sören Auer, Fraunhofer IAIS, University of Bonn * Ricardo Usbeck, AKSW, Simba Competence Center, Leipzig University * Dimitris Kontokostas, AKSW, DBpedia Association, KILT Competence Center, InfAI, Leipzig * Sandro Coelho, AKSW, DBpedia Association, KILT Competence Center, InfAI, Leipzig Contact Email: _db...@in..._ <mailto:dbp...@in...> |
From: Sebastian H. <pr...@in...> - 2017-02-27 13:12:31
|
Dear all, please find below the first edition of the DBpedia Newsletter, which will be sent to all subscribers in a three month interval. Of course, we would welcome any people who are interested to sign up (_http://eepurl.com/crrrkz_). We decided to use the newsletter as the major outlet for updates on DBpedia, so no further Newsletter edition will be sent to this list. Smaller and concise announcements will be posted on our _blog_ <http://blog.dbpedia.org/>. Also we would welcome anyone to contribute to the Newsletter with DBpedia (and Linked Open Data) related announcements by sending an email to _db...@in..._ <mailto:db...@in...>. Announcement/News can include links and should be less than 100 words and are subject to moderation and editorial editing (mostly shortening). Newsletter sign up form:<http://eepurl.com/crrrkz>_http://eepurl.com/crrrkz_ Thank you very much, Sebastian *(Belated) Happy New Year to all DBpedians!* We are a proud to look retrospectively at a successful year 2016 and would like to welcome 2017 with our new newsletter (~4 times per year), which will allow you to stay up to date and provide feedback, e.g. via the included survey and the planned events in 2017. *New members *- We kickstarted the<http://wiki.dbpedia.org/dbpedia-association>_DBpedia Association_ <http://wiki.dbpedia.org/dbpedia-association> with a first wave of new members: OpenLink Software, Semantic Web Company, Ontotext, FIZ Karlsruhe, Mannheim University, Poznań University of Economics and Business, the Business Information Systems Institute Ltd and the Open Knowledge Foundation Greece joined the DBpedia Association in 2016. We created two web pages that summarize reasons to<http://wiki.dbpedia.org/why-is-dbpedia-so-important>_support DBpedia via donations_ <http://wiki.dbpedia.org/why-is-dbpedia-so-important> and<http://wiki.dbpedia.org/membership>_become a member_ <http://wiki.dbpedia.org/membership>. *DBpedia in Dutch* (_http://nl.dbpedia.org_ <http://nl.dbpedia.org/>) is the first chapter which formalized an official DBpedia Chapter consortium. The cooperation was initiated by Koninklijke Bibliotheek (National Library of the Netherlands) and Huygens ING (research institute of History and Culture). Other partners like imec/Ghent University, the Netherlands Institute of Sound and Vision and the Network Institute (Vrije Universiteit) joined as well. This cooperation will strengthen the DBpedia Dutch chapter and community of contributors as well improve the cooperation with the Dutch research infrastructure and the Dutch Digital Heritage. We are in intensive contact with the Japanese, the German and the Italian chapters to form official chapters and gain institutional support for DBpedia. You would like to know how to start a DBpedia chapter? Please check here:<http://wiki.dbpedia.org/about/language-chapters>_http://wiki.dbpedia.org/about/language-chapters_ *DBpedia Releases *- Since 2015 we provide bi-annual DBpedia releases. The latest one,<http://wiki.dbpedia.org/dbpedia-version-2016-04>_2016-04_ <http://wiki.dbpedia.org/dbpedia-version-2016-04>, featured a new Wikipedia references & citation dataset for the English Wikipedia. In addition, we separated the data which we received from heuristic-based infobox extractors from the already mapped and quality-controlled data to remove low quality data and avoid duplicates & low quality information. We improved on our<http://www.semantic-web-journal.net/content/wikidata-through-eyes-dbpedia-1>_Wikidata extraction_ <http://www.semantic-web-journal.net/content/wikidata-through-eyes-dbpedia-1> and mapped all our data to Wikidata-based DBpedia IRIs. Wikidata will become more and more the core of future extractions. *Consortium partners for EU and national projects - *Since its conception DBpedia has never been funded directly, but was supported only by individual tasks in different projects and by the spirit of volunteers. With the establishment of the DBpedia Association, we are now in a position to receive direct funding and are eligible as a full consortium partner for EU and International projects. Furthermore, we are able to mediate trusted partners - who have worked with us in the past and contributed greatly to DBpedia - for national proposals in over 30 countries worldwide (contact via reply to this email.) *Events - *In addition to our participation in the 12th edition of the SEMANTiCS, in the 19th International Conference on Business Information Systems and in the Google Summer of Code project, we arranged three DBpedia community meetings, in The Hague, Leipzig and Sunnyvale, California. In order to get updates on our events and projects, stay tuned and check the<http://blog.dbpedia.org/>_DBpedia blog_ <http://blog.dbpedia.org/>. Please check out the dates to the two new DBpedia meetings below. *Links - *We have revived the portal, that allows the LOD community to contribute their links, so we can include them in DBpedia Releases. If your database links to DBpedia, you can submit your links here:<https://github.com/dbpedia/links>_https://github.com/dbpedia/links_ . We provide additional support for this and also provide a service, that - once you have contributed your links - will tell you which data is linking to your knowledge base via DBpedia<http://downloads.dbpedia.org/links/backlinks/>_http://downloads.dbpedia.org/links/backlinks/_, available only for Association members. /We would like to thank again all people who were involved to enable this!/ *2017 - New Year - New Opportunities* To make 2017 as great as 2016 we have already reviewed community feedback and worked out some plans to bring the DBpedia community closer together whereas we attain our goals and follow our visions. Below are the most important points for 2017. *User Survey - *Sören Auer and the DBpedia Board prepared a survey to assess the direction of DBpedia and the DBpedia Association. We would like to know what you think should be our priorities. Please take a minute and vote here:<https://goo.gl/forms/NQxrMWskcKlZJAU63>_https://goo.gl/forms/NQxrMWskcKlZJAU63_ *User support *- We set up a new portal to streamline support requests for DBpedia. We would encourage you to submit all questions to<http://wiki.dbpedia.org/support>_http://wiki.dbpedia.org/support_. And … if you are already an experienced DBpedia user, you can sign up and answer questions and get kudos. Upon request, we can issue a certificate for your CV. During the course of 2017 we will also provide a priority support channel for members and Chapters. *Save the Date* *- Galway 21 Jun and Amsterdam 14 Sep*. DBpedia will be part of the_Language, Data and Knowledge (LDK) conference_ <http://ldk2017.org/> in Galway, Ireland (*Submission open until Feb 16th*). This new biennial conference series aims at bringing together researchers from across disciplines. The DBpedia community will have a full day event on 21th of June 2017. Also during the<http://2017.semantics.cc/>_SEMANTiCS 2017 in Amsterdam_ <http://2017.semantics.cc/>, Sep 11-14 (*Submission open until May 17th or June 23rd*), the DBpedia community will get together on the 14th of September for a DBpedia community meeting. Updates will be posted in the respective<http://wiki.dbpedia.org/events>_events section_ <http://wiki.dbpedia.org/events> and the<http://blog.dbpedia.org/>_blog_ <http://blog.dbpedia.org/>. *TextExt: DBpedia’s Open Text Extraction Challenge -* (_http://wiki.dbpedia.org/textext_) As DBpedia and Wikidata currently focus primarily on representing factual knowledge as contained in Wikipedia infoboxes, we created the DBpedia Open Text Extraction Challenge. Participants are asked to submit their engines that extract facts and knowledge from Wikipedia article texts to dramatically broaden and deepen the amount of structured DBpedia/Wikipedia data. *Community coordination* - *You'd like to get involved in DBpedia? *We set up a new Get Involved section. If you are interested in details or would like to get in touch with the DBpedia community, please read here:<http://wiki.dbpedia.org/get-involved>_http://wiki.dbpedia.org/get-involved_ *Community chairs *- The active community of developers and engineers comes together in the DBpedia community committee. We will build up this committee with the help of Pablo Mendes and Magnus Knuth who will serve as provisional chairs. The committee can be joined by recommendation only based on merit. If you would like to get in contact with the community committee please check here:<http://wiki.dbpedia.org/about/contact>_http://wiki.dbpedia.org/about/contact_ Two delegates from the community committee are elected chairs and will take seats at the Board of Trustees. This board is the main decision-making body of the DBpedia Association and oversees the association and its work, as its ultimate corporate authority. There are four board meetings per year, please have a look at the public minutes here:<http://wiki.dbpedia.org/board-minutes>_http://wiki.dbpedia.org/board-minutes_ *Technical development I: Wikidata - *Many DBpedians are excited about the progress<https://www.wikidata.org/>_Wikidata_ <https://www.wikidata.org/> is making and we are planning to use Wikidata’s data as the new core for our extraction and fusion. This means that in future releases we will fuse data from Wikidata with the usual data we extract from over 100 Wikipedia language editions with additional data from other high quality LOD sources and do the usual refinement, typing and quality-control. We hope that this will provide an unprecedented knowledge graph with superior coverage, completeness and correctness. *Technical development II: UnifiedViews - *our plan to achieve the above mentioned fusion will be realized by an active collaboration with the<https://www.semantic-web.at/>_Semantic Web Company (SWC)_ <https://www.semantic-web.at/>, where DBpedia developers work side by side with the<http://www.poolparty.biz/>_PoolParty Semantic Suite_ <http://www.poolparty.biz/> technical team to add scalability, provenance tracking and linking/fusion capabilities into the Data Processing Units of the<https://www.poolparty.biz/unifiedviews/>_UnifiedViews_ <https://www.poolparty.biz/unifiedviews/> workflows. *Technical development III - *For 2017, we hope to establish further hands-on collaboration with companies and organisations to push all aspects of DBpedia, in particular: search and visualisation, ontology maintenance, querying and indexing crawling data from web and social media. We also work together with our members to prioritize on integrating data that they think useful. *Membership* - If you would like to become a member of the DBpedia Association, please check all benefits here:<http://wiki.dbpedia.org/membership>_http://wiki.dbpedia.org/membership_. If you require any further information, feel free to contact us by replying to this email. We are already very excited to spend time with you on further community meetings and to publish new DBpedia releases. All the best, Julia, Dimitris & Sebastian DBpedia Association |
From: Sebastian H. <pr...@in...> - 2017-02-22 17:43:45
|
Apologies for cross-posting Call for Papers, Posters & Workshops SEMANTiCS 2017 - The Linked Data Conference 13th International Conference on Semantic Systems Amsterdam, Netherlands September 11 -14, 2017 http://2017.semantics.cc For details please go to: https://2017.semantics.cc/calls Important Dates (Research & Innovation): *Abstract Submission Deadline: May 17, 2017 (11:59 pm, Hawaii time) *Paper Submission Deadline: May 24, 2017 (11:59 pm, Hawaii time) *Notification of Acceptance: July 3, 2017 (11:59 pm, Hawaii time) *Camera-Ready Paper: August 14, 2017 (11:59 pm, Hawaii time) Important Dates (Workshops & Tutorials): *Submission of Proposals for Workshops with Call for Papers: March 31, 2017 (23:59 Hawaii Time) *Submission of Proposals for Tutorials and Workshops without Call for Papers: June 30, 2017 (23:59 Hawaii Time) *Workshop Proposals Notification of Acceptance: April 13, 2017 (23:59 Hawaii Time) *Workshop Website/Call for Papers Online: April 30, 2017 (23:59 Hawaii Time) *Workshop Camera-Ready Proceedings: September 4, 2017 (23:59 Hawaii Time) *SEMANTiCS 2017 Workshop & Tutorial Days: September 11 and 14, 2017 As in the previous years, SEMANTiCS’17 proceedings will be published by ACM ICPS (pending) and CEUR WS proceedings. SEMANTiCS 2017 will especially welcome submissions for the following hot topics: *Data Science (special track, see below) *Web Semantics, Linked (Open) Data & schema.org *Corporate Knowledge Graphs *Knowledge Integration and Language Technologies *Data Quality Management *Economics of Data, Data Services and Data Ecosystems Following the success of previous years, the ‘horizontals’ (research) and ‘verticals’ (industries) below are of interest for the conference: Horizontals: *Enterprise Linked Data & Data Integration *Knowledge Discovery & Intelligent Search *Business Models, Governance & Data Strategies *Semantics in Big Data *Text Analytics *Data Portals & Knowledge Visualization *Semantic Information Management *Document Management & Content Management *Terminology, Thesaurus & Ontology Management *Smart Connectivity, Networking & Interlinking *Smart Data & Semantics in IoT *Semantics for IT Safety & Security *Semantic Rules, Policies & Licensing *Community, Social & Societal Aspects Data Science Special Track Horizontals: *Large-Scale Data Processing (stream processing, handling large-scale graphs) *Data Analytics (Machine Learning, Predictive Analytics, Network Analytics) *Communicating Data (Data Visualization, UX & Interaction Design, Crowdsourcing) *Cross-cutting Issues (Ethics, Privacy, Security, Provenance) Verticals: *Industry & Engineering *Life Sciences & Health Care *Public Administration *e-Science *Digital Humanities *Galleries, Libraries, Archives & Museums (GLAM) *Education & eLearning *Media & Data Journalism *Publishing, Marketing & Advertising *Tourism & Recreation *Financial & Insurance Industry *Telecommunication & Mobile Services *Sustainable Development: Climate, Water, Air, Ecology *Energy, Smart Homes & Smart Grids *Food, Agriculture & Farming *Safety, Security & Privacy *Transport, Environment & Geospatial For call details please go to: https://2017.semantics.cc/calls |
From: Sebastian H. <pr...@in...> - 2017-01-18 09:06:52
|
Apologies for cross-posting 2nd Call for Research & Innovation Papers SEMANTiCS 2017 - The Linked Data Conference 13th International Conference on Semantic Systems Amsterdam, Netherlands September 11 -14, 2017 http://2017.semantics.cc The Research & Innovation track at SEMANTiCS welcomes the submission of papers on novel scientific research and/or innovations relevant to the topics of the conference. Submissions must be original and must not have been submitted for publication elsewhere. Papers should follow the ACM ICPS guidelines for formatting (http://www.acm.org/sigs/publications/proceedings-templates) and must not exceed 8 pages in lenght for full papers and 4 pages for short papers, including references and optional appendices. Research & Innovation Papers are published within ACM ICP Series. Important Dates (Research & Innovation) Abstract Submission Deadline: May 17, 2017 (11:59 pm, Hawaii time) Paper Submission Deadline: May 24, 2017 (11:59 pm, Hawaii time) Notification of Acceptance: July 3, 2017 (11:59 pm, Hawaii time) Camera-Ready Paper: August 14, 2017 (11:59 pm, Hawaii time) For details please go to: https://2017.semantics.cc/calls or contact the Research and Innovation Chairs: Catherine Faron Zucker, faron [@] i3s.unice.fr, Université Nice Sophia Antipolis Rinke Hoekstra, rinke.hoekstra [@] vu.nl, Vrije Universiteit Amsterdam/University of Amsterdam As in the previous years, SEMANTiCS’17 proceedings will be published by ACM ICP (pending). SEMANTiCS 2017 will especially welcome submissions for the following hot topics: *Data Science (special track, see below) *Web Semantics, Linked (Open) Data & schema.org *Corporate Knowledge Graphs *Knowledge Integration and Language Technologies *Data Quality Management *Economics of Data, Data Services and Data Ecosystems Following the success of previous years, the ‘horizontals’ (research) and ‘verticals’ (industries) below are of interest for the conference: Horizontals *Enterprise Linked Data & Data Integration *Knowledge Discovery & Intelligent Search *Business Models, Governance & Data Strategies *Semantics in Big Data *Text Analytics *Data Portals & Knowledge Visualization *Semantic Information Management *Document Management & Content Management *Terminology, Thesaurus & Ontology Management *Smart Connectivity, Networking & Interlinking *Smart Data & Semantics in IoT *Semantics for IT Safety & Security *Semantic Rules, Policies & Licensing *Community, Social & Societal Aspects Data Science Special Track Horizontals *arge-Scale Data Processing (stream processing, handling large-scale graphs) *Data Analytics (Machine Learning, Predictive Analytics, Network Analytics) *Communicating Data (Data Visualization, UX & Interaction Design, Crowdsourcing) *Cross-cutting Issues (Ethics, Privacy, Security, Provenance) Verticals *Industry & Engineering *Life Sciences & Health Care *Public Administration *e-Science *Digital Humanities *Galleries, Libraries, Archives & Museums (GLAM) *Education & eLearning *Media & Data Journalism *Publishing, Marketing & Advertising *Tourism & Recreation *Financial & Insurance Industry *Telecommunication & Mobile Services *Sustainable Development: Climate, Water, Air, Ecology *Energy, Smart Homes & Smart Grids *Food, Agriculture & Farming *Safety, Security & Privacy *Transport, Environment & Geospatial For details please go to: https://2017.semantics.cc/calls |
From: Sebastian H. <pr...@in...> - 2016-12-22 19:19:42
|
Call for Research & Innovation Papers SEMANTiCS 2017 - The Linked Data Conference 13th International Conference on Semantic Systems Amsterdam, Netherlands September 11 -14, 2017 http://2017.semantics.cc The Research & Innovation track at SEMANTiCS welcomes the submission of papers on novel scientific research and/or innovations relevant to the topics of the conference. Submissions must be original and must not have been submitted for publication elsewhere. Papers should follow the ACM ICPS guidelines for formatting (http://www.acm.org/sigs/publications/proceedings-templates) and must not exceed 8 pages in lenght for full papers and 4 pages for short papers, including references and optional appendices. Research & Innovation Papers are published within ACM ICP Series. Important Dates (Research & Innovation) Abstract Submission Deadline: May 17, 2017 (11:59 pm, Hawaii time) Paper Submission Deadline: May 24, 2017 (11:59 pm, Hawaii time) Notification of Acceptance: July 3, 2017 (11:59 pm, Hawaii time) Camera-Ready Paper: August 14, 2017 (11:59 pm, Hawaii time) For details please go to: https://2017.semantics.cc/calls or contact the Research and Innovation Chairs: Catherine Faron Zucker, faron [@] i3s.unice.fr, Université Nice Sophia Antipolis Rinke Hoekstra, rinke.hoekstra [@] vu.nl, Vrije Universiteit Amsterdam/University of Amsterdam As in the previous years, SEMANTiCS’17 proceedings will be published by ACM ICP (pending). SEMANTiCS 2017 will especially welcome submissions for the following hot topics: *Data Science (special track, see below) *Web Semantics, Linked (Open) Data & schema.org *Corporate Knowledge Graphs *Knowledge Integration and Language Technologies *Data Quality Management *Economics of Data, Data Services and Data Ecosystems Following the success of previous years, the ‘horizontals’ (research) and ‘verticals’ (industries) below are of interest for the conference: Horizontals *Enterprise Linked Data & Data Integration *Knowledge Discovery & Intelligent Search *Business Models, Governance & Data Strategies *Semantics in Big Data *Text Analytics *Data Portals & Knowledge Visualization *Semantic Information Management *Document Management & Content Management *Terminology, Thesaurus & Ontology Management *Smart Connectivity, Networking & Interlinking *Smart Data & Semantics in IoT *Semantics for IT Safety & Security *Semantic Rules, Policies & Licensing *Community, Social & Societal Aspects Data Science Special Track Horizontals *arge-Scale Data Processing (stream processing, handling large-scale graphs) *Data Analytics (Machine Learning, Predictive Analytics, Network Analytics) *Communicating Data (Data Visualization, UX & Interaction Design, Crowdsourcing) *Cross-cutting Issues (Ethics, Privacy, Security, Provenance) Verticals *Industry & Engineering *Life Sciences & Health Care *Public Administration *e-Science *Digital Humanities *Galleries, Libraries, Archives & Museums (GLAM) *Education & eLearning *Media & Data Journalism *Publishing, Marketing & Advertising *Tourism & Recreation *Financial & Insurance Industry *Telecommunication & Mobile Services *Sustainable Development: Climate, Water, Air, Ecology *Energy, Smart Homes & Smart Grids *Food, Agriculture & Farming *Safety, Security & Privacy *Transport, Environment & Geospatial For details please go to: https://2017.semantics.cc/calls |
From: Melissa H. <ha...@oh...> - 2016-11-18 18:27:21
|
Thank you Philippe, This is all very relevant; also related is evidence of (G+E)2P associations - we are already trying to work to align clinGen and OBO efforts in this area, but there are many others. I too would like to see OBO-discuss be more of a community forum as well. I don’t know the answer wrt how to reign in all the listserves and communities but hopefully we can find a way to do that under the umbrella focus of phenomics :-). Cheers, Melissa On Nov 18, 2016, at 11:37 AM, Philippe <pro...@gm...<mailto:pro...@gm...>> wrote: Absolutely. In fact, this is very timely and bearing in mind that efforts such as GA4GH have endorsed the phenopackets.org<http://phenopackets.org> approach validates the works. >From the obofoundry standpoint, it is high time that coordination occurs when it comes when it comes to reporting 'treatment', 'intervention' and the likes. I have already expressed my concerns about having species specific ontologies being developed for reporting stressors (plant experimental conditions ontology, zebrafish experimental conditions)... While I appreciate there are specifics, we need to develop a generic framework to express those. Furthermore, as efforts such as OBI or BAO or Clinical Measurement ontology also provide a range of classes of direct relevance to these issues, a broad cross talk is needed I have gathered from Chris that work in progress on this front. It would be great to see and have more discussions about this topic on list to engage with our community, identify, contribute use cases + acceptance tests. By all means, a great initiative. Let's make obo-discuss active again Best wishes Philippe On 18/11/2016 17:00, Jaiswal, Pankaj - OSU wrote: On 11/18/2016 8:23 AM, Melissa Haendel wrote: However, as this is an NIH proposal, we necessarily need to focus on things that can be conceived of as biomedical in nature. This is an excellent area and I would suggest that many of the biomedical states/conditions in terms of phenotypes are associated with the food, nutrition and environment. Therefore, it is essential that NIH starts recognizing plants and derived food, nutrition and active bio entities/drugs, medications as part of learning about processes and diseases essential to biomedical research. This does not leave environment where we as humans can't survive without plants. Therefore, when we talk of biomedical research we often are looking at the downstream events, but we need to look upstream in the process to solve problems including many of the genetic and phenotype dispositions associated with quality and quantity of food. Thus plants are core to this supply chain to sustain and maintain a healthy diet, calories and nutrition, for everything in the food chain. We will be happy to help. Pankaj Melissa Haendel, PhD Associate Professor Library & Dept. of Medical Informatics and Clinical Epidemiology ha...@oh...<mailto:ha...@oh...> 503-407-5970 www.monarchinitiative.org<http://www.monarchinitiative.org> Appointments: Shanez De Silva de...@oh...<mailto:de...@oh...> |
From: Melissa H. <ha...@oh...> - 2016-11-18 18:23:45
|
Yes to all of this! On Nov 18, 2016, at 11:28 AM, Ramona Walls <rlw...@gm...<mailto:rlw...@gm...>> wrote: Here, here, Pankaj! ------------------------------------------------------ Ramona L. Walls, Ph.D. Senior Scientific Analyst, CyVerse, University of Arizona Research Associate, Bio5 Institute, University of Arizona On Fri, Nov 18, 2016 at 11:00 AM, Jaiswal, Pankaj - OSU <jai...@sc...<mailto:jai...@sc...>> wrote: On 11/18/2016 8:23 AM, Melissa Haendel wrote: However, as this is an NIH proposal, we necessarily need to focus on things that can be conceived of as biomedical in nature. This is an excellent area and I would suggest that many of the biomedical states/conditions in terms of phenotypes are associated with the food, nutrition and environment. Therefore, it is essential that NIH starts recognizing plants and derived food, nutrition and active bio entities/drugs, medications as part of learning about processes and diseases essential to biomedical research. This does not leave environment where we as humans can't survive without plants. Therefore, when we talk of biomedical research we often are looking at the downstream events, but we need to look upstream in the process to solve problems including many of the genetic and phenotype dispositions associated with quality and quantity of food. Thus plants are core to this supply chain to sustain and maintain a healthy diet, calories and nutrition, for everything in the food chain. We will be happy to help. Pankaj -- Pankaj Jaiswal, PhD President, OSU Chapter Phi Kappa Phi Associate Professor Dept. of Botany and Plant Pathology 2082 Cordley Hall Oregon State University Corvallis, OR, 97331 USA Ph.: +1-541-737-8471<tel:%2B1-541-737-8471> Fax: +1-541-737-3573<tel:%2B1-541-737-3573> email: jai...@or...<mailto:jai...@or...> Web: http://jaiswallab.cgrb.oregonstate.edu<http://jaiswallab.cgrb.oregonstate.edu/> http://icbo-conference.org<http://icbo-conference.org/> http://phikappaphi.oregonstate.edu<http://phikappaphi.oregonstate.edu/> Melissa Haendel, PhD Associate Professor Library & Dept. of Medical Informatics and Clinical Epidemiology ha...@oh...<mailto:ha...@oh...> 503-407-5970 www.monarchinitiative.org<http://www.monarchinitiative.org> Appointments: Shanez De Silva de...@oh...<mailto:de...@oh...> |
From: Ramona W. <rlw...@gm...> - 2016-11-18 17:29:11
|
Here, here, Pankaj! ------------------------------------------------------ Ramona L. Walls, Ph.D. Senior Scientific Analyst, CyVerse, University of Arizona Research Associate, Bio5 Institute, University of Arizona On Fri, Nov 18, 2016 at 11:00 AM, Jaiswal, Pankaj - OSU < jai...@sc...> wrote: > > > On 11/18/2016 8:23 AM, Melissa Haendel wrote: > >> However, as this is an NIH proposal, we necessarily need to focus on >> things that can be conceived of as biomedical in nature. >> > > This is an excellent area and I would suggest that many of the biomedical > states/conditions in terms of phenotypes are associated with the food, > nutrition and environment. Therefore, it is essential that NIH starts > recognizing plants and derived food, nutrition and active bio > entities/drugs, medications as part of learning about processes and > diseases essential to biomedical research. This does not leave environment > where we as humans can't survive without plants. Therefore, when we talk of > biomedical research we often are looking at the downstream events, but we > need to look upstream in the process to solve problems including many of > the genetic and phenotype dispositions associated with quality and quantity > of food. Thus plants are core to this supply chain to sustain and maintain > a healthy diet, calories and nutrition, for everything in the food chain. > > We will be happy to help. > > Pankaj > > > -- > Pankaj Jaiswal, PhD > President, OSU Chapter Phi Kappa Phi > Associate Professor > Dept. of Botany and Plant Pathology > 2082 Cordley Hall > Oregon State University > Corvallis, OR, 97331 > USA > > Ph.: +1-541-737-8471 > Fax: +1-541-737-3573 > email: jai...@or... > Web: http://jaiswallab.cgrb.oregonstate.edu > http://icbo-conference.org > http://phikappaphi.oregonstate.edu > > |
From: Jaiswal, P. - O. <jai...@sc...> - 2016-11-18 17:20:49
|
On 11/18/2016 8:23 AM, Melissa Haendel wrote: > However, as this is an NIH proposal, we necessarily need to focus on > things that can be conceived of as biomedical in nature. This is an excellent area and I would suggest that many of the biomedical states/conditions in terms of phenotypes are associated with the food, nutrition and environment. Therefore, it is essential that NIH starts recognizing plants and derived food, nutrition and active bio entities/drugs, medications as part of learning about processes and diseases essential to biomedical research. This does not leave environment where we as humans can't survive without plants. Therefore, when we talk of biomedical research we often are looking at the downstream events, but we need to look upstream in the process to solve problems including many of the genetic and phenotype dispositions associated with quality and quantity of food. Thus plants are core to this supply chain to sustain and maintain a healthy diet, calories and nutrition, for everything in the food chain. We will be happy to help. Pankaj -- Pankaj Jaiswal, PhD President, OSU Chapter Phi Kappa Phi Associate Professor Dept. of Botany and Plant Pathology 2082 Cordley Hall Oregon State University Corvallis, OR, 97331 USA Ph.: +1-541-737-8471 Fax: +1-541-737-3573 email: jai...@or... Web: http://jaiswallab.cgrb.oregonstate.edu http://icbo-conference.org http://phikappaphi.oregonstate.edu |
From: Melissa H. <ha...@oh...> - 2016-11-18 16:24:09
|
Sorry reading backwards, Yes Ramona it will - the idea is to coalesce all phenomics informatics. However, as this is an NIH proposal, we necessarily need to focus on things that can be conceived of as biomedical in nature. That said we definitely want to continue to unite phenomics informatics from the biodiversity, evolution, plant, and veterinary and livestock communities. Also, we plan to engage other agencies with support letters to support this notion as well. Do you think we should get a separate letter from Cyverse? Anyone else who wants to write a separate letter we’d be grateful, we will be targeting some of you but really will be delighted to include any and all letters, there is no limit. Thanks again! Melissa On Nov 18, 2016, at 10:01 AM, Ramona Walls <rlw...@gm...<mailto:rlw...@gm...>> wrote: I also agree this is a good idea. Will it extend beyond the biomedical arena (i.e. human and model species phenotypes)? There is a huge amount of plant phenotype data being collected from sensors now, and I would hate to see a completely different framework evolve for plants and animals. Also, CyVerse is actively pursuing infrastructure for phenotype data, and we would be happy to be a part of this discussion for both plants and animals. Ramona ------------------------------------------------------ Ramona L. Walls, Ph.D. Senior Scientific Analyst, CyVerse, University of Arizona Research Associate, Bio5 Institute, University of Arizona On Thu, Nov 17, 2016 at 7:53 PM, Peter Robinson <Pet...@ja...<mailto:Pet...@ja...>> wrote: thanks for the support Lynn! -Peter Peter Robinson Professor of Computational Biology The Jackson Laboratory for Genomic Medicine 10 Discovery Drive Farmington, CT 06032 860.837.2095<tel:860.837.2095> t | 860.990.3130<tel:860.990.3130> m pet...@ja...<mailto:pet...@ja...> www.jax.org<http://www.jax.org/> The Jackson Laboratory: Leading the search for tomorrow's cures ________________________________________ From: Lynn Schriml <lyn...@gm...<mailto:lyn...@gm...>> Sent: Thursday, November 17, 2016 7:42 PM To: Chris Mungall Cc: obo...@li...<mailto:obo...@li...> list; obo...@li...<mailto:obo...@li...> Subject: Re: [Obo-discuss] [Obo-phenotype] Phenomics Conference Grant Endorsement Hello Chris, Great idea. Is there a google doc to sign ? How will the workshop link in disease ? Connecting across genotype, phenotype, environment and disease would be great !! And DO could contribute to these efforts, and extend our HPO and DO connections. And this would tie in well with our molecular subtyping projects. Cheers, Lynn Sent from my iPhone > On Nov 17, 2016, at 5:39 PM, Chris Mungall <cjm...@lb...<mailto:cjm...@lb...>> wrote: > > Hi all, > > I'm writing to request a signature for a letter of support from members > of the OBO community. > > Melissa Haendel and Peter Robinson are preparing to submit a proposal in > response to RFA-CA-16-020 “BD2K Support for Meetings of Data Science > Related Organizations (U13)” > (https://grants.nih.gov/grants/guide/rfa-files/RFA-CA-16-020.html) in > which they outline a series of conferences and community gatherings to > coalesce phenomics informatics data structures, ontologies, algorithms, > and tools. > > Despite the advances in search engine and text mining technologies for > other types of data, phenomics data is surprisingly hard to harness due > to the scope and heterogeneity of phenotype standards and terminologies. > Such barriers have made it a significant challenge to link and integrate > with the necessary precision and richness for mechanistic discovery for > precision medicine. Further, there are also crucial gaps for which new > standards and tooling have yet to be developed. The phenomics community > has been working towards addressing these issues within a diversity of > areas, but to date in an insufficiently coordinated way. This is where > we need to learn from each other and advance the field with unity. A > series of conferences and hands-on workshops to bring people together to > share ideas, techniques and evolve technologies is very timely in the > eras of big data and genomic medicine, where sophisticated informatics > is needed to address the relationship between phenotype and genotype, > environment, medical care, and treatments. Finally, how we represent > evidence and provenance of this information will be needed to support > clinically actionable mechanistic outcomes that will come with the > ‘omics revolution. > > Please consider signing the letter of support here: > https://www.surveymonkey.com/r/K9TYYCV > > Thanks, > Chris > > ------------------------------------------------------------------------------ > _______________________________________________ > Obo-phenotype mailing list > Obo...@li...<mailto:Obo...@li...> > https://lists.sourceforge.net/lists/listinfo/obo-phenotype ------------------------------------------------------------------------------ _______________________________________________ Obo-discuss mailing list Obo...@li...<mailto:Obo...@li...> https://lists.sourceforge.net/lists/listinfo/obo-discuss --- The information in this email, including attachments, may be confidential and is intended solely for the addressee(s). If you believe you received this email by mistake, please notify the sender by return email as soon as possible. ------------------------------------------------------------------------------ _______________________________________________ Obo-discuss mailing list Obo...@li...<mailto:Obo...@li...> https://lists.sourceforge.net/lists/listinfo/obo-discuss ------------------------------------------------------------------------------ _______________________________________________ Obo-phenotype mailing list Obo...@li...<mailto:Obo...@li...> https://lists.sourceforge.net/lists/listinfo/obo-phenotype Melissa Haendel, PhD Associate Professor Library & Dept. of Medical Informatics and Clinical Epidemiology ha...@oh...<mailto:ha...@oh...> 503-407-5970 www.monarchinitiative.org<http://www.monarchinitiative.org> Appointments: Shanez De Silva de...@oh...<mailto:de...@oh...> |
From: Melissa H. <ha...@oh...> - 2016-11-18 16:21:39
|
Yes thanks to all of you! It will really help the Foundry community to have funds to get together more often around these topics. Please help us get it funded, its is for all of us :-). On Nov 17, 2016, at 7:53 PM, Peter Robinson <Pet...@ja...<mailto:Pet...@ja...>> wrote: thanks for the support Lynn! -Peter Peter Robinson Professor of Computational Biology The Jackson Laboratory for Genomic Medicine 10 Discovery Drive Farmington, CT 06032 860.837.2095 t | 860.990.3130 m pet...@ja...<mailto:pet...@ja...> www.jax.org The Jackson Laboratory: Leading the search for tomorrow's cures ________________________________________ From: Lynn Schriml <lyn...@gm...> Sent: Thursday, November 17, 2016 7:42 PM To: Chris Mungall Cc: obo...@li... list; obo...@li... Subject: Re: [Obo-discuss] [Obo-phenotype] Phenomics Conference Grant Endorsement Hello Chris, Great idea. Is there a google doc to sign ? How will the workshop link in disease ? Connecting across genotype, phenotype, environment and disease would be great !! And DO could contribute to these efforts, and extend our HPO and DO connections. And this would tie in well with our molecular subtyping projects. Cheers, Lynn Sent from my iPhone On Nov 17, 2016, at 5:39 PM, Chris Mungall <cjm...@lb...> wrote: Hi all, I'm writing to request a signature for a letter of support from members of the OBO community. Melissa Haendel and Peter Robinson are preparing to submit a proposal in response to RFA-CA-16-020 “BD2K Support for Meetings of Data Science Related Organizations (U13)” (https://grants.nih.gov/grants/guide/rfa-files/RFA-CA-16-020.html) in which they outline a series of conferences and community gatherings to coalesce phenomics informatics data structures, ontologies, algorithms, and tools. Despite the advances in search engine and text mining technologies for other types of data, phenomics data is surprisingly hard to harness due to the scope and heterogeneity of phenotype standards and terminologies. Such barriers have made it a significant challenge to link and integrate with the necessary precision and richness for mechanistic discovery for precision medicine. Further, there are also crucial gaps for which new standards and tooling have yet to be developed. The phenomics community has been working towards addressing these issues within a diversity of areas, but to date in an insufficiently coordinated way. This is where we need to learn from each other and advance the field with unity. A series of conferences and hands-on workshops to bring people together to share ideas, techniques and evolve technologies is very timely in the eras of big data and genomic medicine, where sophisticated informatics is needed to address the relationship between phenotype and genotype, environment, medical care, and treatments. Finally, how we represent evidence and provenance of this information will be needed to support clinically actionable mechanistic outcomes that will come with the ‘omics revolution. Please consider signing the letter of support here: https://www.surveymonkey.com/r/K9TYYCV Thanks, Chris ------------------------------------------------------------------------------ _______________________________________________ Obo-phenotype mailing list Obo...@li... https://lists.sourceforge.net/lists/listinfo/obo-phenotype ------------------------------------------------------------------------------ _______________________________________________ Obo-discuss mailing list Obo...@li... https://lists.sourceforge.net/lists/listinfo/obo-discuss --- The information in this email, including attachments, may be confidential and is intended solely for the addressee(s). If you believe you received this email by mistake, please notify the sender by return email as soon as possible. ------------------------------------------------------------------------------ _______________________________________________ Obo-discuss mailing list Obo...@li... https://lists.sourceforge.net/lists/listinfo/obo-discuss Melissa Haendel, PhD Associate Professor Library & Dept. of Medical Informatics and Clinical Epidemiology ha...@oh...<mailto:ha...@oh...> 503-407-5970 www.monarchinitiative.org<http://www.monarchinitiative.org> Appointments: Shanez De Silva de...@oh...<mailto:de...@oh...> |
From: Ramona W. <rlw...@gm...> - 2016-11-18 16:02:01
|
I also agree this is a good idea. Will it extend beyond the biomedical arena (i.e. human and model species phenotypes)? There is a huge amount of plant phenotype data being collected from sensors now, and I would hate to see a completely different framework evolve for plants and animals. Also, CyVerse is actively pursuing infrastructure for phenotype data, and we would be happy to be a part of this discussion for both plants and animals. Ramona ------------------------------------------------------ Ramona L. Walls, Ph.D. Senior Scientific Analyst, CyVerse, University of Arizona Research Associate, Bio5 Institute, University of Arizona On Thu, Nov 17, 2016 at 7:53 PM, Peter Robinson <Pet...@ja...> wrote: > thanks for the support Lynn! > -Peter > > Peter Robinson > Professor of Computational Biology > The Jackson Laboratory for Genomic Medicine > 10 Discovery Drive > Farmington, CT 06032 > 860.837.2095 t | 860.990.3130 m > pet...@ja... > www.jax.org > > The Jackson Laboratory: Leading the search for tomorrow's cures > > > ________________________________________ > From: Lynn Schriml <lyn...@gm...> > Sent: Thursday, November 17, 2016 7:42 PM > To: Chris Mungall > Cc: obo...@li... list; > obo...@li... > Subject: Re: [Obo-discuss] [Obo-phenotype] Phenomics Conference Grant > Endorsement > > Hello Chris, > Great idea. > Is there a google doc to sign ? > How will the workshop link in disease ? > Connecting across genotype, phenotype, environment and disease would be > great !! > And DO could contribute to these efforts, and extend our HPO and DO > connections. And this would tie in well with our molecular subtyping > projects. > > Cheers, > Lynn > > Sent from my iPhone > > > On Nov 17, 2016, at 5:39 PM, Chris Mungall <cjm...@lb...> wrote: > > > > Hi all, > > > > I'm writing to request a signature for a letter of support from members > > of the OBO community. > > > > Melissa Haendel and Peter Robinson are preparing to submit a proposal in > > response to RFA-CA-16-020 “BD2K Support for Meetings of Data Science > > Related Organizations (U13)” > > (https://grants.nih.gov/grants/guide/rfa-files/RFA-CA-16-020.html) in > > which they outline a series of conferences and community gatherings to > > coalesce phenomics informatics data structures, ontologies, algorithms, > > and tools. > > > > Despite the advances in search engine and text mining technologies for > > other types of data, phenomics data is surprisingly hard to harness due > > to the scope and heterogeneity of phenotype standards and terminologies. > > Such barriers have made it a significant challenge to link and integrate > > with the necessary precision and richness for mechanistic discovery for > > precision medicine. Further, there are also crucial gaps for which new > > standards and tooling have yet to be developed. The phenomics community > > has been working towards addressing these issues within a diversity of > > areas, but to date in an insufficiently coordinated way. This is where > > we need to learn from each other and advance the field with unity. A > > series of conferences and hands-on workshops to bring people together to > > share ideas, techniques and evolve technologies is very timely in the > > eras of big data and genomic medicine, where sophisticated informatics > > is needed to address the relationship between phenotype and genotype, > > environment, medical care, and treatments. Finally, how we represent > > evidence and provenance of this information will be needed to support > > clinically actionable mechanistic outcomes that will come with the > > ‘omics revolution. > > > > Please consider signing the letter of support here: > > https://www.surveymonkey.com/r/K9TYYCV > > > > Thanks, > > Chris > > > > ------------------------------------------------------------ > ------------------ > > _______________________________________________ > > Obo-phenotype mailing list > > Obo...@li... > > https://lists.sourceforge.net/lists/listinfo/obo-phenotype > > ------------------------------------------------------------ > ------------------ > _______________________________________________ > Obo-discuss mailing list > Obo...@li... > https://lists.sourceforge.net/lists/listinfo/obo-discuss > --- > > The information in this email, including attachments, may be confidential > and is intended solely for the addressee(s). If you believe you received > this email by mistake, please notify the sender by return email as soon as > possible. > > > ------------------------------------------------------------ > ------------------ > _______________________________________________ > Obo-discuss mailing list > Obo...@li... > https://lists.sourceforge.net/lists/listinfo/obo-discuss > |