[Obo-owltools] Issue 72 in owltools: Add ontology trimming option to owlsim

[<owl...@go...>]

Status: Accepted
Owner: cmung...@gmail.com
Labels: Type-Defect Priority-Medium

New issue 72 by cmung...@gmail.com: Add ontology trimming option to owlsim
http://code.google.com/p/owltools/issues/detail?id=72

Add an option or command to remove any classes that have no (inferred)  
instances.

This can be done in owltools at the moment, but requires a few steps. E.g.  
you can make a GAF from the annotations and use  
--extract-ontology-subset-by-gaf, but this is not convenient.

This would be particularly useful for pre-calculations of the allxall  
attribute matrix

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