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[Obo-phenotype-commits] obo/ontology/phenotype human_disease.obo, 1.272, 1.273 mammalian_phenotype.obo, 1.385, 1.386 mosquito_insecticide_resistance.obo, 1.931, 1.932
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From: Seth C. <sjc...@us...> - 2010-09-24 07:02:18
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Update of /cvsroot/obo/obo/ontology/phenotype In directory sfp-cvsdas-4.v30.ch3.sourceforge.com:/tmp/cvs-serv10108/phenotype Modified Files: human_disease.obo mammalian_phenotype.obo mosquito_insecticide_resistance.obo Log Message: Automated file update Index: human_disease.obo =================================================================== RCS file: /cvsroot/obo/obo/ontology/phenotype/human_disease.obo,v retrieving revision 1.272 retrieving revision 1.273 diff -C2 -d -r1.272 -r1.273 *** human_disease.obo 23 Sep 2010 07:01:50 -0000 1.272 --- human_disease.obo 24 Sep 2010 07:02:03 -0000 1.273 *************** *** 1,4 **** format-version: 1.2 ! date: 22:09:2010 16:56 auto-generated-by: OBO-Edit 2.1-beta4 subsetdef: gram-negative_bacterial_infectious_disease "gram-negative bacterial infectious disease" --- 1,4 ---- format-version: 1.2 ! date: 23:09:2010 16:51 auto-generated-by: OBO-Edit 2.1-beta4 subsetdef: gram-negative_bacterial_infectious_disease "gram-negative bacterial infectious disease" *************** *** 3022,3025 **** --- 3022,3034 ---- [Term] + id: DOID:0050427 + name: xeroderma pigmentosum + xref: MSH:D014983 + is_a: DOID:1698 ! genetic skin disease + is_a: DOID:2961 ! DNA repair deficiency + created_by: snadendla + creation_date: 2010-09-23T03:20:40Z + + [Term] id: DOID:0060000 name: infective endocarditis *************** *** 6545,6548 **** --- 6554,6558 ---- name: vitamin A deficiency xref: ICD9CM_2010:264.8 + xref: MSH:D014802 xref: SNOMEDCT_2010_1_31:190619005 xref: SNOMEDCT_2010_1_31:191081005 *************** *** 8498,8501 **** --- 8508,8512 ---- id: DOID:1040 name: chronic lymphocytic leukemia + xref: MSH:D015451 xref: UMLS_CUI:C0023458 is_a: DOID:1036 ! chronic leukemia *************** *** 12004,12008 **** xref: UMLS_CUI:C1510447 is_a: DOID:2030 ! anxiety disorder ! is_a: DOID:507 ! adjustment reaction [Term] --- 12015,12019 ---- xref: UMLS_CUI:C1510447 is_a: DOID:2030 ! anxiety disorder ! is_a: DOID:507 ! adjustment disorder [Term] *************** *** 24190,24197 **** [Term] id: DOID:11599 ! name: gustatory sweating synonym: "Baillarger Syndrome" EXACT [] - synonym: "Frey Syndrome" EXACT [] synonym: "Gustatory hyperhidrosis (disorder)" EXACT [SNOMEDCT_2005_07_31:238758008] synonym: "Gustatory sweating (finding)" EXACT [SNOMEDCT_2005_07_31:56046002] xref: MSH2010_2010_02_22:D013547 --- 24201,24208 ---- [Term] id: DOID:11599 ! name: Frey Syndrome synonym: "Baillarger Syndrome" EXACT [] synonym: "Gustatory hyperhidrosis (disorder)" EXACT [SNOMEDCT_2005_07_31:238758008] + synonym: "gustatory sweating" EXACT [] synonym: "Gustatory sweating (finding)" EXACT [SNOMEDCT_2005_07_31:56046002] xref: MSH2010_2010_02_22:D013547 *************** *** 24290,24294 **** synonym: "Perinatal skin prob. NOS" EXACT [SNOMEDCT_2005_07_31:268886003] xref: ICD9CM_2010:778.0 - xref: MSH2010_2010_02_22:D015160 xref: OMIM2009_05_01:236750 xref: OMIM2009_05_01:MTHU002168 --- 24301,24304 ---- *************** *** 29493,29497 **** synonym: "Hydrops fetalis due to isoimmunization [dup] (disorder)" EXACT [SNOMEDCT_2005_07_31:206432002] xref: ICD9CM_2010:773.3 - xref: MSH2010_2010_02_22:D015160 xref: SNOMEDCT_2010_1_31:15539009 xref: SNOMEDCT_2010_1_31:157134005 --- 29503,29506 ---- *************** *** 34524,34528 **** synonym: "vulval cancer" EXACT [CSP2005:2016-2183] xref: ICD9CM_2010:184.4 - xref: MSH2010_2010_02_22:D014846 xref: NCI2009_04D:C7502 xref: SNOMEDCT_2010_1_31:154535008 --- 34533,34536 ---- *************** *** 37000,37004 **** xref: SNOMEDCT_2010_1_31:192063005 xref: UMLS_CUI:C0154594 ! is_a: DOID:507 ! adjustment reaction [Term] --- 37008,37012 ---- xref: SNOMEDCT_2010_1_31:192063005 xref: UMLS_CUI:C0154594 ! is_a: DOID:507 ! adjustment disorder [Term] *************** *** 38940,38944 **** xref: SNOMEDCT_2010_1_31:47372000 xref: UMLS_CUI:C0154587 ! is_a: DOID:507 ! adjustment reaction [Term] --- 38948,38952 ---- xref: SNOMEDCT_2010_1_31:47372000 xref: UMLS_CUI:C0154587 ! is_a: DOID:507 ! adjustment disorder [Term] *************** *** 42685,42689 **** synonym: "Werdnig-Hoffmann disease (disorder)" EXACT [SNOMEDCT_2005_07_31:64383006] xref: ICD9CM_2010:335.0 - xref: MSH2010_2010_02_22:D014897 xref: OMIM2009_05_01:253300 xref: SNOMEDCT_2010_1_31:155016008 --- 42693,42696 ---- *************** *** 49196,49200 **** xref: ICD9CM_2010:593.71 xref: UMLS_CUI:C0375377 ! is_a: DOID:9620 ! Vesico-ureteral reflux [Term] --- 49203,49207 ---- xref: ICD9CM_2010:593.71 xref: UMLS_CUI:C0375377 ! is_a: DOID:9620 ! vesico-ureteral reflux [Term] *************** *** 49203,49207 **** xref: ICD9CM_2010:593.72 xref: UMLS_CUI:C0375378 ! is_a: DOID:9620 ! Vesico-ureteral reflux [Term] --- 49210,49214 ---- xref: ICD9CM_2010:593.72 xref: UMLS_CUI:C0375378 ! is_a: DOID:9620 ! vesico-ureteral reflux [Term] *************** *** 49210,49214 **** xref: ICD9CM_2010:593.73 xref: UMLS_CUI:C0375379 ! is_a: DOID:9620 ! Vesico-ureteral reflux [Term] --- 49217,49221 ---- xref: ICD9CM_2010:593.73 xref: UMLS_CUI:C0375379 ! is_a: DOID:9620 ! vesico-ureteral reflux [Term] *************** *** 58766,58770 **** xref: ICD9CM_2010:309.83 xref: UMLS_CUI:C0154595 ! is_a: DOID:507 ! adjustment reaction [Term] --- 58773,58777 ---- xref: ICD9CM_2010:309.83 xref: UMLS_CUI:C0154595 ! is_a: DOID:507 ! adjustment disorder [Term] *************** *** 68737,68741 **** synonym: "carcinoma of large Bowel" EXACT [NCI2004_11_17:C2955] synonym: "carcinoma of the large Intestine" RELATED [] - xref: MSH2010_2010_02_22:D015179 xref: NCI2009_04D:C2955 xref: OMIM2009_05_01:114500 --- 68744,68747 ---- *************** *** 69501,69505 **** xref: UMLS_CUI:C0038436 is_a: DOID:2030 ! anxiety disorder ! is_a: DOID:507 ! adjustment reaction [Term] --- 69507,69511 ---- xref: UMLS_CUI:C0038436 is_a: DOID:2030 ! anxiety disorder ! is_a: DOID:507 ! adjustment disorder [Term] *************** *** 73484,73488 **** synonym: "West Nile Fever with encephalitis" EXACT [ICD9CM_2006:066.41] xref: ICD9CM_2010:066.41 - xref: MSH2010_2010_02_22:D014901 xref: SNOMEDCT_2010_1_31:392662004 xref: UMLS_CUI:C0751583 --- 73490,73493 ---- *************** *** 86668,86672 **** xref: SNOMEDCT_2010_1_31:84984002 xref: UMLS_CUI:C0001540 ! is_a: DOID:507 ! adjustment reaction [Term] --- 86673,86677 ---- xref: SNOMEDCT_2010_1_31:84984002 xref: UMLS_CUI:C0001540 ! is_a: DOID:507 ! adjustment disorder [Term] *************** *** 107751,107755 **** xref: ICD9CM_2010:309.28 xref: UMLS_CUI:C0154588 ! is_a: DOID:507 ! adjustment reaction [Term] --- 107756,107760 ---- xref: ICD9CM_2010:309.28 xref: UMLS_CUI:C0154588 ! is_a: DOID:507 ! adjustment disorder [Term] *************** *** 107862,107867 **** [Term] id: DOID:507 ! name: adjustment reaction ! synonym: "adjustment disorder" EXACT [] xref: ICD9CM_2010:309 xref: ICD9CM_2010:309.9 --- 107867,107872 ---- [Term] id: DOID:507 ! name: adjustment disorder ! synonym: "adjustment reaction" EXACT [] xref: ICD9CM_2010:309 xref: ICD9CM_2010:309.9 *************** *** 107992,107996 **** xref: ICD9CM_2010:309.22 xref: UMLS_CUI:C0154585 ! is_a: DOID:507 ! adjustment reaction [Term] --- 107997,108001 ---- xref: ICD9CM_2010:309.22 xref: UMLS_CUI:C0154585 ! is_a: DOID:507 ! adjustment disorder [Term] *************** *** 111963,111967 **** synonym: "NGB - New growth of bladder" EXACT [SNOMEDCT_2005_07_31:363455001] synonym: "tumor of the bladder" EXACT [NCI2004_11_17:C2901] - xref: MSH2010_2010_02_22:D001749 xref: NCI2009_04D:C2901 xref: SNOMEDCT_2010_1_31:126885006 --- 111968,111971 ---- *************** *** 136361,136365 **** synonym: "Delusional disorder (disorder)" EXACT [SNOMEDCT_2005_07_31:48500005] xref: ICD9CM_2010:297.1 - xref: MSH2010_2010_02_22:D012563 xref: SNOMEDCT_2010_1_31:192330005 xref: SNOMEDCT_2010_1_31:48500005 --- 136365,136368 ---- *************** *** 137632,137636 **** name: mixed oligodendroglioma-astrocytoma synonym: "WHO grade II mixed glioma" EXACT [NCI2004_11_17:C4050] - xref: MSH2010_2010_02_22:D009837 xref: NCI2009_04D:C4050 xref: SNOMEDCT_2010_1_31:22217002 --- 137635,137638 ---- *************** *** 138251,138255 **** xref: SNOMEDCT_2010_1_31:52475004 xref: UMLS_CUI:C0043345 ! is_a: DOID:37 ! skin disease [Term] --- 138253,138257 ---- xref: SNOMEDCT_2010_1_31:52475004 xref: UMLS_CUI:C0043345 ! is_obsolete: true [Term] *************** *** 152875,152879 **** id: DOID:9256 name: colorectal cancer - xref: MSH2010_2010_02_22:D015179 xref: UMLS_CUI:C1527249 is_a: DOID:1994 ! large Intestine carcinoma --- 152877,152880 ---- *************** *** 157609,157613 **** [Term] id: DOID:9620 ! name: Vesico-ureteral reflux xref: ICD9CM_2010:593.7 xref: MSH2010_2010_02_22:D014718 --- 157610,157614 ---- [Term] id: DOID:9620 ! name: vesico-ureteral reflux xref: ICD9CM_2010:593.7 xref: MSH2010_2010_02_22:D014718 *************** *** 158419,158423 **** xref: SNOMEDCT_2010_1_31:57194009 xref: UMLS_CUI:C0001539 ! is_a: DOID:507 ! adjustment reaction [Term] --- 158420,158424 ---- xref: SNOMEDCT_2010_1_31:57194009 xref: UMLS_CUI:C0001539 ! is_a: DOID:507 ! adjustment disorder [Term] Index: mammalian_phenotype.obo =================================================================== RCS file: /cvsroot/obo/obo/ontology/phenotype/mammalian_phenotype.obo,v retrieving revision 1.385 retrieving revision 1.386 diff -C2 -d -r1.385 -r1.386 *** mammalian_phenotype.obo 23 Sep 2010 07:01:55 -0000 1.385 --- mammalian_phenotype.obo 24 Sep 2010 07:02:07 -0000 1.386 *************** *** 1,6 **** format-version: 1.2 ! date: 21:09:2010 16:27 saved-by: csmith auto-generated-by: OBO-Edit 2.0 default-namespace: MPheno.ontology remark: The Mammalian Phenotype Ontology is being developed by Cynthia L. Smith, Susan M. Bello, Carroll W. Goldsmith and Janan T. Eppig, as part of the Mouse Genome Database (MGD) Project, Mouse Genome Informatics (MGI), The Jackson Laboratory, Bar Harbor, ME. Copyright 2007 The Jackson Laboratory. This file contains pre-coordinated phenotype terms, definitions and synonyms that can be used to describe mammalian phenotypes. The ontology is represented as a directed acyclic graph (DAG). It organizes phenotype terms into major biological system headers such as nervous system and respiratory system. Behavior and lethality terms are also represented. This ontology is currently under development. Daily updates are available at the Mouse Genome Informatics (MGI) ftp site (ftp://ftp.informatics.jax.org/pub/reports/index.html#pheno) as well as the OBO Foundry site (http://obofoundry.org/). Questions, comments and suggestions are welcome, and should be directed to ph...@in... MGD is funded by NIH/NHGRI grant HG000330. --- 1,7 ---- format-version: 1.2 ! date: 22:09:2010 16:25 saved-by: csmith [...1839 lines suppressed...] + name: increased liver glycogen level + def: "greater than the normal concentration of a readily converted carbohydrate reserve in liver" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] + synonym: "increased hepatic glycogen level" EXACT [] + is_a: MP:0000609 ! abnormal liver physiology + is_a: MP:0005440 ! increased glycogen level + created_by: csmith + creation_date: 2010-09-22T04:00:20Z + + [Term] + id: MP:0010401 + name: increased skeletal muscle glycogen level + def: "greater than the normal concentration of a readily converted carbohydrate reserve in skeletal muscle" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] + synonym: "increased striated muscle glycogen level" EXACT [] + is_a: MP:0002106 ! abnormal muscle physiology + is_a: MP:0005440 ! increased glycogen level + created_by: csmith + creation_date: 2010-09-22T04:00:40Z + [Typedef] id: part_of |