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[Obo-phenotype-commits] obo/ontology/phenotype human_disease.obo, 1.114, 1.115 mammalian_phenotype.obo, 1.313, 1.314 mosquito_insecticide_resistance.obo, 1.700, 1.701
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From: Seth C. <sjc...@us...> - 2010-01-22 08:06:32
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Update of /cvsroot/obo/obo/ontology/phenotype In directory sfp-cvsdas-1.v30.ch3.sourceforge.com:/tmp/cvs-serv9937/phenotype Modified Files: human_disease.obo mammalian_phenotype.obo mosquito_insecticide_resistance.obo Log Message: Automated file update Index: human_disease.obo =================================================================== RCS file: /cvsroot/obo/obo/ontology/phenotype/human_disease.obo,v retrieving revision 1.114 retrieving revision 1.115 diff -C2 -d -r1.114 -r1.115 *** human_disease.obo 19 Jan 2010 08:16:59 -0000 1.114 --- human_disease.obo 22 Jan 2010 08:03:16 -0000 1.115 *************** *** 1,5 **** format-version: 1.2 ! date: 18:01:2010 16:58 ! saved-by: mchibucos auto-generated-by: OBO-Edit 2.0 default-namespace: disease_ontology --- 1,5 ---- format-version: 1.2 ! date: 21:01:2010 17:15 ! saved-by: snadendla auto-generated-by: OBO-Edit 2.0 default-namespace: disease_ontology *************** *** 390983,390988 **** xref: UMLS_SNOMEDCT_2005_01_31_AUI:A3413508 xref: UMLS_ST:T047 ! is_a: DOID:322 ! myelitis ! is_a: DOID:9588 ! encephalitis [Term] --- 390983,390987 ---- xref: UMLS_SNOMEDCT_2005_01_31_AUI:A3413508 xref: UMLS_ST:T047 ! is_a: DOID:935 ! central nervous system infection [Term] *************** *** 392272,392275 **** --- 392271,392275 ---- xref: UMLS_SNOMEDCT_2005_01_31_AUI:A3801535 xref: UMLS_ST:T047 + is_a: DOID:1310 ! central nervous system viral infection is_a: DOID:9588 ! encephalitis Index: mammalian_phenotype.obo =================================================================== RCS file: /cvsroot/obo/obo/ontology/phenotype/mammalian_phenotype.obo,v retrieving revision 1.313 retrieving revision 1.314 diff -C2 -d -r1.313 -r1.314 *** mammalian_phenotype.obo 21 Jan 2010 08:03:56 -0000 1.313 --- mammalian_phenotype.obo 22 Jan 2010 08:06:19 -0000 1.314 *************** *** 1,4 **** format-version: 1.2 ! date: 19:01:2010 15:56 saved-by: csmith auto-generated-by: OBO-Edit 2.0 --- 1,4 ---- format-version: 1.2 ! date: 20:01:2010 14:41 saved-by: csmith auto-generated-by: OBO-Edit 2.0 *************** *** 639,642 **** --- 639,643 ---- alt_id: MP:0000429 def: "congenital fissure of the tissues normally uniting to form the palate" [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", PMID:9753320] + synonym: "palatoschisis" EXACT [] is_a: MP:0003755 ! abnormal palate morphology *************** *** 2495,2503 **** name: absent maxillary shelf alt_id: MP:0000112 ! def: "missing outgrowth of the maxilla; normally fuses with palatine shelf to form secondary palate" [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", PMID:7914451] synonym: "absent maxillary palatal process" EXACT [] synonym: "absent palatal process of maxilla" EXACT [] synonym: "absent palatine process" EXACT [] - is_a: MP:0000111 ! cleft palate is_a: MP:0004538 ! abnormal maxillary shelf --- 2496,2503 ---- name: absent maxillary shelf alt_id: MP:0000112 ! def: "missing bony projection of the maxilla that normally fuses with palatine shelf to form secondary (hard) palate" [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator", PMID:7914451] synonym: "absent maxillary palatal process" EXACT [] synonym: "absent palatal process of maxilla" EXACT [] synonym: "absent palatine process" EXACT [] is_a: MP:0004538 ! abnormal maxillary shelf *************** *** 2506,2514 **** name: absent palatine shelf alt_id: MP:0000113 ! def: "missing outgrowth of the palatine bone; normally fuses with maxillary shelf to form secondary palate" [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", PMID:7914451] synonym: "absent horizontal plate" EXACT [] synonym: "absent palatal process of palatine bone" EXACT [] synonym: "absent palatine palatal process" EXACT [] - is_a: MP:0000111 ! cleft palate is_a: MP:0004537 ! abnormal palatine shelf --- 2506,2513 ---- name: absent palatine shelf alt_id: MP:0000113 ! def: "missing bony projection of the palatine bone that normally fuses with maxillary shelf to form secondary (hard) palate" [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator", PMID:7914451] synonym: "absent horizontal plate" EXACT [] synonym: "absent palatal process of palatine bone" EXACT [] synonym: "absent palatine palatal process" EXACT [] is_a: MP:0004537 ! abnormal palatine shelf *************** *** 4668,4671 **** --- 4667,4671 ---- synonym: "tongue abnormalities" EXACT [] synonym: "tongue dysplasia" EXACT [] + is_a: MP:0000452 ! abnormal mouth morphology is_a: MP:0000462 ! abnormal digestive system morphology *************** *** 24373,24377 **** id: MP:0003756 name: abnormal hard palate ! def: "abnormality in the anterior part of the palate that is supported by and includes the palatal extensions of the maxillary and palatine bones in the adult" [NCBI:matt "Matthew Mailman"] is_a: MP:0003755 ! abnormal palate morphology --- 24373,24377 ---- id: MP:0003756 name: abnormal hard palate ! def: "any strucutral anomaly of the anterior part of the palate that is supported by and includes the palatal extensions of the maxillary and palatine bones in the adult" [NCBI:matt "Matthew Mailman"] is_a: MP:0003755 ! abnormal palate morphology *************** *** 29755,29774 **** id: MP:0004537 name: abnormal palatine shelf ! def: "any structural anomaly of the palatine bone; normally fuses with maxillary shelf to form secondary (hard) palate" [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "abnormal horizontal plate" EXACT [] synonym: "abnormal palatal process of palatine bone" EXACT [] synonym: "abnormal palatine palatal process" EXACT [] - is_a: MP:0003756 ! abnormal hard palate is_a: MP:0005249 ! abnormal palatine bone morphology [Term] id: MP:0004538 name: abnormal maxillary shelf ! def: "any structural anomaly of the outgrowth of the maxilla that normally fuses with palatine shelf to form secondary (hard) palate" [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "abnormal maxillary palatal process" EXACT [] synonym: "abnormal palatal process of maxilla" EXACT [] synonym: "abnormal palatine process" EXACT [] is_a: MP:0000455 ! abnormal maxilla morphology ! is_a: MP:0003756 ! abnormal hard palate [Term] --- 29755,29774 ---- id: MP:0004537 name: abnormal palatine shelf ! def: "any structural anomaly of the bony projection of the palatine bone that normally fuses with maxillary shelf to form secondary (hard) palate" [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "abnormal horizontal plate" EXACT [] synonym: "abnormal palatal process of palatine bone" EXACT [] synonym: "abnormal palatine palatal process" EXACT [] is_a: MP:0005249 ! abnormal palatine bone morphology + is_a: MP:0009891 ! abnormal palate bone morphology [Term] id: MP:0004538 name: abnormal maxillary shelf ! def: "any structural anomaly of the bony projection of the maxilla that normally fuses with palatine shelf to form secondary (hard) palate" [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] synonym: "abnormal maxillary palatal process" EXACT [] synonym: "abnormal palatal process of maxilla" EXACT [] synonym: "abnormal palatine process" EXACT [] is_a: MP:0000455 ! abnormal maxilla morphology ! is_a: MP:0009891 ! abnormal palate bone morphology [Term] *************** *** 34572,34575 **** --- 34572,34576 ---- name: cleft lip def: "defect in the upper lip where the maxillary prominence fails to merge with the merged medial nasal prominences" [MESH:C07.465.409.225] + synonym: "cheiloschisis" EXACT [] synonym: "harelip" EXACT [] is_a: MP:0003769 ! abnormal lip morphology *************** *** 55479,55487 **** def: "abnormal formation of the roof of the mouth in vertebrates formed anteriorly by a bony projection of the upper jaw (hard palate) and posteriorly by the fold of connective tissue (soft palate)" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: MP:0003755 ! abnormal palate morphology [Term] id: MP:0009654 ! name: abnormal primary palate morphology ! def: "any anomaly in the part of the shelf separating the oral and nasal cavities that is formed during early embryonic development from the medial nasal processes which derive from the frontonasal process; these merge with each other and with the bilateral maxillary processes to form the upper lip and the primary palate" [MGI:llw2 "Linda Washburn, Mouse Genome Informatics Curator", PMID:<new dbxref>16942766] synonym: "abnormal primary palate primordia" RELATED [] synonym: "abnormal primitive palate morphology" EXACT [] --- 55480,55489 ---- def: "abnormal formation of the roof of the mouth in vertebrates formed anteriorly by a bony projection of the upper jaw (hard palate) and posteriorly by the fold of connective tissue (soft palate)" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] is_a: MP:0003755 ! abnormal palate morphology + is_a: MP:0003935 ! abnormal craniofacial development [Term] id: MP:0009654 ! name: abnormal primary palate development ! def: "any anomaly in the formation of the part of the shelf separating the oral and nasal cavities that is formed during early embryonic development from the medial nasal processes which derive from the frontonasal process; these merge with each other and with the bilateral maxillary processes to form the upper lip and the primary palate" [MGI:llw2 "Linda Washburn, Mouse Genome Informatics Curator", PMID:<new dbxref>16942766] synonym: "abnormal primary palate primordia" RELATED [] synonym: "abnormal primitive palate morphology" EXACT [] *************** *** 55490,55495 **** [Term] id: MP:0009655 ! name: abnormal secondary palate morphology ! def: "any structural anomaly in the part of the palate that is formed during embryonic development when palatal projections from the inner part of the maxillary processes emerge, extend and elevate into a horizontal position above the tongue" [MGI:llw2 "Linda Washburn, Mouse Genome Informatics Curator", PMID:16942766] is_a: MP:0009653 ! abnormal palate development --- 55492,55497 ---- [Term] id: MP:0009655 ! name: abnormal secondary palate development ! def: "any anomaly in the formation of the part of the palate that is formed during embryonic development when palatal projections from the inner part of the maxillary processes emerge, extend and elevate into a horizontal position above the tongue" [MGI:llw2 "Linda Washburn, Mouse Genome Informatics Curator", PMID:16942766] is_a: MP:0009653 ! abnormal palate development *************** *** 57192,57200 **** [Term] id: MP:0009882 ! name: absent palatal shelf def: "absence of the palatal projections from the inner part of the maxillary processes that fuse to form the secondary palate" [PMID:16680722] synonym: "absent palatal shelves" EXACT [] synonym: "failure of palatal shelf formation" EXACT [] ! is_a: MP:0009655 ! abnormal secondary palate morphology created_by: csmith creation_date: 2010-01-19T02:48:14Z --- 57194,57203 ---- [Term] id: MP:0009882 ! name: absent palatal shelf def: "absence of the palatal projections from the inner part of the maxillary processes that fuse to form the secondary palate" [PMID:16680722] synonym: "absent palatal shelves" EXACT [] synonym: "failure of palatal shelf formation" EXACT [] ! is_a: MP:0009655 ! abnormal secondary palate development ! is_a: MP:0009890 ! cleft secondary palate created_by: csmith creation_date: 2010-01-19T02:48:14Z *************** *** 57204,57208 **** name: palatal shelf hypoplasia def: "reduced size of the palatal projections from the inner part of the maxillary processes that fuse to form the secondary palate, often due to reduced cell number" [PMID:16680722] ! is_a: MP:0009655 ! abnormal secondary palate morphology created_by: csmith creation_date: 2010-01-19T02:53:02Z --- 57207,57212 ---- name: palatal shelf hypoplasia def: "reduced size of the palatal projections from the inner part of the maxillary processes that fuse to form the secondary palate, often due to reduced cell number" [PMID:16680722] ! is_a: MP:0009655 ! abnormal secondary palate development ! is_a: MP:0009890 ! cleft secondary palate created_by: csmith creation_date: 2010-01-19T02:53:02Z *************** *** 57212,57216 **** name: palatal shelf fusion with tongue or mandible def: "palatal shelves do not elevate during development and instead fuse with tongue tissues or with the mandible tissues" [PMID:16680722] ! is_a: MP:0009655 ! abnormal secondary palate morphology created_by: csmith creation_date: 2010-01-19T03:16:25Z --- 57216,57221 ---- name: palatal shelf fusion with tongue or mandible def: "palatal shelves do not elevate during development and instead fuse with tongue tissues or with the mandible tissues" [PMID:16680722] ! is_a: MP:0009655 ! abnormal secondary palate development ! is_a: MP:0009890 ! cleft secondary palate created_by: csmith creation_date: 2010-01-19T03:16:25Z *************** *** 57220,57224 **** name: abnormal palatal shelf elevation def: "any anomaly in the process in which the palatal shelves move from a vertical position in the orofacial cavity to a horizontal apposition above the developing tongue" [PMID:<new dbxref>16680722] ! is_a: MP:0009655 ! abnormal secondary palate morphology created_by: csmith creation_date: 2010-01-19T03:17:08Z --- 57225,57230 ---- name: abnormal palatal shelf elevation def: "any anomaly in the process in which the palatal shelves move from a vertical position in the orofacial cavity to a horizontal apposition above the developing tongue" [PMID:<new dbxref>16680722] ! is_a: MP:0009655 ! abnormal secondary palate development ! is_a: MP:0009890 ! cleft secondary palate created_by: csmith creation_date: 2010-01-19T03:17:08Z *************** *** 57236,57240 **** name: abnormal palatal shelf fusion at midline def: "any anomaly in the process in which the palatal shelves grow toward the midline and adhere along the medial edge epithelia, forming the midline epithelial seam which disappears in later stages" [PMID:16942766] ! is_a: MP:0009655 ! abnormal secondary palate morphology created_by: csmith creation_date: 2010-01-19T03:17:54Z --- 57242,57247 ---- name: abnormal palatal shelf fusion at midline def: "any anomaly in the process in which the palatal shelves grow toward the midline and adhere along the medial edge epithelia, forming the midline epithelial seam which disappears in later stages" [PMID:16942766] ! is_a: MP:0009655 ! abnormal secondary palate development ! is_a: MP:0009890 ! cleft secondary palate created_by: csmith creation_date: 2010-01-19T03:17:54Z *************** *** 57256,57259 **** --- 57263,57349 ---- creation_date: 2010-01-19T03:35:05Z + [Term] + id: MP:0009890 + name: cleft secondary palate + def: "congenital fissure of the tissues normally uniting to form the secondary palate" [PMID:16680722] + is_a: MP:0000111 ! cleft palate + created_by: csmith + creation_date: 2010-01-20T11:04:45Z + + [Term] + id: MP:0009891 + name: abnormal palate bone morphology + def: "any structural anomaly of the maxillary or palatine shelves that comprise the bones of the hard palate" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] + is_a: MP:0003756 ! abnormal hard palate + created_by: csmith + creation_date: 2010-01-20T11:38:22Z + + [Term] + id: MP:0009892 + name: palate bone hypoplasia + def: "reduced size of the maxillary or palatine shelves that comprise the bones of the hard palate, usually due to reduced cell number" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] + synonym: "palatial bone hypoplasia" EXACT [] + is_a: MP:0009891 ! abnormal palate bone morphology + created_by: csmith + creation_date: 2010-01-20T02:30:11Z + + [Term] + id: MP:0009893 + name: cleft primary palate + synonym: "cleft primitive palate" EXACT [] + is_a: MP:0000111 ! cleft palate + created_by: csmith + creation_date: 2010-01-20T02:33:15Z + + [Term] + id: MP:0009894 + name: absent hard palate + def: "absence of the anterior part of the palate that is supported by and includes the palatal extensions of the maxillary and palatine bones in the adult" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"] + is_a: MP:0003756 ! abnormal hard palate + created_by: csmith + creation_date: 2010-01-20T02:33:53Z + + [Term] + id: MP:0009895 + name: decreased palatine shelf size + is_a: MP:0004537 ! abnormal palatine shelf + created_by: csmith + creation_date: 2010-01-20T02:37:15Z + + [Term] + id: MP:0009896 + name: palatine shelf hypoplasia + is_a: MP:0009895 ! decreased palatine shelf size + created_by: csmith + creation_date: 2010-01-20T02:38:43Z + + [Term] + id: MP:0009897 + name: decreased maxillary shelf size + is_a: MP:0004538 ! abnormal maxillary shelf + created_by: csmith + creation_date: 2010-01-20T02:39:08Z + + [Term] + id: MP:0009898 + name: maxillary shelf hypoplasia + is_a: MP:0009897 ! decreased maxillary shelf size + created_by: csmith + creation_date: 2010-01-20T02:39:29Z + + [Term] + id: MP:0009899 + name: hyoid bone hypoplasia + is_a: MP:0003056 ! abnormal hyoid bone morphology + created_by: csmith + creation_date: 2010-01-20T02:40:12Z + + [Term] + id: MP:0009900 + name: vomer bone hypoplasia + is_a: MP:0000098 ! abnormal vomer bone morphology + created_by: csmith + creation_date: 2010-01-20T02:40:44Z + [Typedef] id: part_of |