#210 NTR: prestalk U cell

GO-Cell-XP
closed-wont-fix
5
2014-12-16
2013-01-18
Petra Fey
No

Please add two new cell types from PMID:20080085. These have also been added to the latest release of the Dicty anatomy ontology.

Thanks,
Petra, dictyBase

1)
NEW: prestalk U cell
def: "Cell that is undergoing differentiation to become a stalk cell. pstU cells express the rtaA marker and preferentially populate the upper cup region during culmination." [DDB:pf, PMID:20080085]
synonym: "pstU cell" EXACT []
is_a: id: CL:0000269 prestalk cell

2)
NEW: prestalk U/anterior like cell
def: "Anterior-like cell that expresses the rtaA promoter but not ecmA, ecmB or the ecmO promoter." [DDB:pf, PMID:20080085]
synonym: "pstU/ALC" EXACT []
is_a: id: CL:0000265 anterior like cell

Related

Cell Ontology (CL) requests: #210

Discussion

  • Chris Mungall

    Chris Mungall - 2013-04-30

    I suggest DDAnat takes ownership for all dicty cell types, no sense repeating here, not many useful generalizations (interesting ongoing discussion on epithelial cells notwithstanding!)

     
  • Nicole Vasilevsky

    • assigned_to: Chris Mungall
    • Group: --> GO-Cell-XP
     
    • Chris Mungall

      Chris Mungall - 2014-12-03

      Should go into DictyAnat

      On 2 Dec 2014, at 13:04, Nicole Vasilevsky wrote:

      • assigned_to: Chris Mungall
      • Group: --> GO-Cell-XP

      [cell-ontology-cl-requests:#210] NTR: prestalk U cell

      Status: open
      Group: GO-Cell-XP
      Labels: new term request
      Created: Fri Jan 18, 2013 08:10 PM UTC by Petra Fey
      Last Updated: Fri Jan 18, 2013 08:10 PM UTC
      Owner: Chris Mungall

      Please add two new cell types from PMID:20080085. These have also been
      added to the latest release of the Dicty anatomy ontology.

      Thanks,
      Petra, dictyBase

      1)
      NEW: prestalk U cell
      def: "Cell that is undergoing differentiation to become a stalk cell.
      pstU cells express the rtaA marker and preferentially populate the
      upper cup region during culmination." [DDB:pf, PMID:20080085]
      synonym: "pstU cell" EXACT []
      is_a: id: CL:0000269 prestalk cell

      2)
      NEW: prestalk U/anterior like cell
      def: "Anterior-like cell that expresses the rtaA promoter but not
      ecmA, ecmB or the ecmO promoter." [DDB:pf, PMID:20080085]
      synonym: "pstU/ALC" EXACT []
      is_a: id: CL:0000265 anterior like cell


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      Related

      Cell Ontology (CL) requests: #210

  • Nicole Vasilevsky

    • status: open --> closed-wont-fix
     
  • Nicole Vasilevsky

    These have been to added to DDAnt. We will consider importing into CL at a later date.

     

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