Menu
▾
▴
#826 NTRs (requested by project ENCODE)
editor preferred term: Illumina Genome Analyzer
textual definition: The first Solexa sequencer, launched in 2006, capable of sequencing 1 gigabase (Gb) of data in a single run.
definition source for the textual definition: http://www.illumina.com/technology/next-generation-sequencing/solexa-technology.html
logical definition: DNA sequencer --> Illumina Genome Analyzer
editor preferred term: Illumina HiSeq X Ten
alternative terms: HiSeq X Ten
textual definition: A DNA sequencer that consists of a set of 10 HiSeq X Sequencing Systems.
definition source for the textual definition: http://www.illumina.com/systems/hiseq-x-sequencing-system/system.html
logical definition: DNA sequencer --> Illumina Genome Analyzer
(note this has also been requested on #749)
editor preferred term: Illumina Infinium Omni5Exome-4 Kit
textual definition:A BeadChip which is manufactured by the Illumina corporation. Built upon BeadChip tehcnology, the array > 4.3 million whole-genome variants for genotyping and copy number variation (CNV).
definition source for the textual definition: http://www.illumina.com/products/by-type/microarray-kits/infinium-omni5-exome.html
logical definition: Illumina BeachChip --> Illumina Infinium Omni5Exome-4 Kit
editor preferred term: Illumina Infinium MethylationEPIC BeadChip
textual definition: A methylation BeadChip which is manufactured by the Illumina corporation. Built upon BeadChip tehcnology, the array interrogates ~ 850,000 methylation sites per sample at single-nucleotide resolution.
definition source for the textual definition: http://www.illumina.com/content/dam/illumina-marketing/documents/products/datasheets/humanmethylationepic-data-sheet-1070-2015-008.pdf
logical definition: Illumina methylation BeadChip --> Illumina Infinium MethylationEPIC BeadChip
editor preferred term: microRNA counts
textual definition: An assay using digital molecular barcoding technology to quantify target microRNA molecules without the need for amplification.
definition source for the textual definition: http://www.nanostring.com/applications/technology; https://www.ncbi.nlm.nih.gov/pubmed/26729350
logical definition: microRNA profiling assay --> microRNA counts
Need to standardize the definitions (see below).
Will address the 10HiSeqX and note in #749.
microRNA counts: nanostring reference returns page not found. Don't see a defn in the PubMed article.
llumina Genome Analyzer: "A DNA sequencer manufactured by Solexa as one of its first sequencer lines, launched in 2006, and capable of sequencing 1 gigabase (Gb) of data in a single run."
Illumina Infinium Omni5Exome-4 Kit: "An Illumina BeadChip which is an array that interrogates over 4.3 million whole-genome variants for genotyping and copy number variation."
Illumina Infinium MethylationEPIC BeadChip: "An Illumina methylation BeadChip which is an array that interrogates ~ 850,000 methylation sites per sample at single-nucleotide resolution."
Added the sequencer and bead chip terms to OBI.
Apologies.
Please try this document for microRNA counts...
https://www.nanostring.com/application/files/9614/8964/8051/MAN-C0009-05_nCounter_miRNA_Expression_Assay.pdf
We've moved the issue tracker to GitHub!
Please see https://github.com/obi-ontology/obi/issues/806
Thanks, Chris