Getting the Sourcecode

OASIS-Genomics source code is available as a git repository from Sourceforge.net
The code is distributed in 3 different folders:
• BioMart: Contains the code corresponding to the webserver and the main components of the front end. This is the customized code from BioMart (Instructions on how to configure the server and running it can be found at the BioMart website (http://www.biomart.org/)
• Database: SQL code and schema design necessary to implement the OASIS-genomics database/warehouse back end. The current version of the code is designed to run on Oracle 11.
• Oasiswidgets: Code for some of the custom built functionality in the OASIS-genomics web portal. Here is the code for OASIS-print, Pan Cancer report and web services data and mutation summary and for pathway and cancer type lists.

To access the code repository click on the following link or copy and paste it to your favourite web browser:
http://sourceforge.net/projects/oasisgenomics/

From the main page click on the “Browse Code” button.

Once on the Git repository page, select the type of download/protocol you want to use from the top left options (e.g HTTP).

Once the protocol has been selected, copy the text in the “access” text box on the top right.

If working with windows, you can paste the selected code to your favorite git tool. Shown in the example is TortoiseGit (https://code.google.com/p/tortoisegit/):

From linux/unix you can copy the text to the terminal and download the code into the selected folder: