I find this kind of strange since I have imported tens of thousands of files into Objectify without a problem. But I was just importing a few thousand files (using --recursive on some directories) and when I ran a verify_file there were two different errors on a few files. See Bugs #2427250 and #2427286 (I use the Bug Tracker under the Objectify project http://sourceforge.net/projects/objectify\).
To be on the safe side until I can find what these problems are, I would ask that you keep a backup of some sort (compress_sparse or keep .dif files). Also after using import_file, always use verify_file to make sure the files were imported correctly.
And if you have any sort of error please report it.
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