NucNet Tools / Discussion / Getting Help with Nucnet Tools: Compilation error building graph codes

Anonymous - 2018-05-07

Dear Prof.
when I make all_graph, I met the following error, I don't know how to solve it, could you help me? Thanks

g++ -Werror -Wall -Wpointer-arith -Wwrite-strings -fshort-enums -fno-common -g -O0 -fopenmp -Wno-deprecated xml2-config --cflags gsl-config --cflags -I../../vendor/libnucnet/0.31/src -I../../vendor/wnmatrix/0.19/src -I../../vendor/libstatmech/0.10/src -I../../vendor/libnuceq/0.7/src -I../.. -std=c++11 -c -o ../../obj/graphhelper.o graphhelper.cpp
In file included from /home/hhh/mesasdk/include/c++/5.3.1/x8664-pc-linux-gnu/bits/gthr-default.h:35:0,
from /home/hhh/mesasdk/include/c++/5.3.1/x8664-pc-linux-gnu/bits/gthr.h:148,
from /home/hhh/mesasdk/include/c++/5.3.1/ext/atomicity.h:35,
from /home/hhh/mesasdk/include/c++/5.3.1/memory:73,
from /usr/include/boost/unordered/unorderedsetfwd.hpp:14,
from /usr/include/boost/unordered/unorderedset.hpp:17,
from /usr/include/boost/unorderedset.hpp:17,
from /usr/include/boost/graph/adjacencylist.hpp:21,
from ../../nnt/graph.h:29,
from graphhelper.h:29,
from graphhelper.cpp:21:
/home/hhh/mesasdk/include/c++/5.3.1/ext/concurrence.h:122:34: error: cannot convert '<brace-enclosed initializer="" list="">' to 'short int' in initialization
gthreadmutext Mmutex = GTHREADMUTEXINIT;
^
/home/hhh/mesasdk/include/c++/5.3.1/ext/concurrence.h:177:44: error: cannot convert '<brace-enclosed initializer="" list="">' to 'short int' in initialization
gthreadrecursivemutext Mmutex = GTHREADRECURSIVEMUTEXINIT;
^
Makefile:59: recipe for target '../../obj/graphhelper.o' failed
make: [../../obj/graphhelper.o] Error 1

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- Bradley S. Meyer - 2018-05-07
  
  Thanks for your post. I'm not able to reproduce this error. It may be something with your compiler. Two things you might try:
  
  First, check if this is a parallel programming issue. Try
  
  cd nucnet-tools-code/examples/graph
  export NNT_NO_OPENMP=1
  make clean
  make all_graph
  
  Does that compile? Second, you might check on your version of Boost by using the test_versions code in examples/misc:
  
  cd nucnet-tools-code/examples/misc
  make clean
  make test_versions
  ./test_versions
  
  What version for boost does that give? Best wishes.
  
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Anonymous - 2018-05-10

Dear Professor,

Thanks for your reply.

When I make export NNT_NO_OPENMP=1 / make clean / make all_graph and make test_versions, it give the same error:

tar xz -C ../../vendor -f ../../vendor/wn_matrix.tar.gz
g++ -Werror -Wall -Wpointer-arith -Wwrite-strings -fshort-enums -fno-common -g -O0 -DNO_OPENMP -Wno-deprecated xml2-config --cflags gsl-config --cflags -I../../vendor/libnucnet/0.31/src -I../../vendor/wn_matrix/0.19/src -I../../vendor/libstatmech/0.10/src -I../../vendor/libnuceq/0.7/src -I../.. -c ../../vendor/wn_matrix/0.19/src/WnMatrix.c -o ../../obj/WnMatrix.o
tar xz -C ../../vendor -f ../../vendor/libnucnet.tar.gz
g++ -Werror -Wall -Wpointer-arith -Wwrite-strings -fshort-enums -fno-common -g -O0 -DNO_OPENMP -Wno-deprecated xml2-config --cflags gsl-config --cflags -I../../vendor/libnucnet/0.31/src -I../../vendor/wn_matrix/0.19/src -I../../vendor/libstatmech/0.10/src -I../../vendor/libnuceq/0.7/src -I../.. -c ../../vendor/libnucnet/0.31/src/LibnucnetNuc.c -o ../../obj/LibnucnetNuc.o
tar xz -C ../../vendor -f ../../vendor/libnucnet.tar.gz
g++ -Werror -Wall -Wpointer-arith -Wwrite-strings -fshort-enums -fno-common -g -O0 -DNO_OPENMP -Wno-deprecated xml2-config --cflags gsl-config --cflags -I../../vendor/libnucnet/0.31/src -I../../vendor/wn_matrix/0.19/src -I../../vendor/libstatmech/0.10/src -I../../vendor/libnuceq/0.7/src -I../.. -c ../../vendor/libnucnet/0.31/src/LibnucnetReac.c -o ../../obj/LibnucnetReac.o
tar xz -C ../../vendor -f ../../vendor/libnucnet.tar.gz
g++ -Werror -Wall -Wpointer-arith -Wwrite-strings -fshort-enums -fno-common -g -O0 -DNO_OPENMP -Wno-deprecated xml2-config --cflags gsl-config --cflags -I../../vendor/libnucnet/0.31/src -I../../vendor/wn_matrix/0.19/src -I../../vendor/libstatmech/0.10/src -I../../vendor/libnuceq/0.7/src -I../.. -c ../../vendor/libnucnet/0.31/src/Libnucnet.c -o ../../obj/Libnucnet.o
tar xz -C ../../vendor -f ../../vendor/libstatmech.tar.gz
g++ -Werror -Wall -Wpointer-arith -Wwrite-strings -fshort-enums -fno-common -g -O0 -DNO_OPENMP -Wno-deprecated xml2-config --cflags gsl-config --cflags -I../../vendor/libnucnet/0.31/src -I../../vendor/wn_matrix/0.19/src -I../../vendor/libstatmech/0.10/src -I../../vendor/libnuceq/0.7/src -I../.. -c ../../vendor/libstatmech/0.10/src/Libstatmech.c -o ../../obj/Libstatmech.o
In file included from ../../vendor/libstatmech/0.10/src/Libstatmech.h:39:0,
from ../../vendor/libstatmech/0.10/src/Libstatmech.c:35:
/usr/include/string.h:541:5: error: 'locale_t' has not been declared
locale_t loc)
^
In file included from /home/let/mesasdk/lib/gcc/x86_64-pc-linux-gnu/5.3.1/include-fixed/features.h:338:0,
from /usr/include/stdio.h:27,
from ../../vendor/libstatmech/0.10/src/Libstatmech.h:37,
from ../../vendor/libstatmech/0.10/src/Libstatmech.c:35:
/usr/include/string.h:542:33: error: nonnull argument references non-pointer operand (argument 3, operand 3)
THROW attribute_pure nonnull ((1, 2, 3));
^
In file included from ../../vendor/libstatmech/0.10/src/Libstatmech.h:39:0,
from ../../vendor/libstatmech/0.10/src/Libstatmech.c:35:
/usr/include/string.h:545:18: error: 'locale_t' has not been declared
size_t n, locale_t loc)
^
In file included from /home/let/mesasdk/lib/gcc/x86_64-pc-linux-gnu/5.3.1/include-fixed/features.h:338:0,
from /usr/include/stdio.h:27,
from ../../vendor/libstatmech/0.10/src/Libstatmech.h:37,
from ../../vendor/libstatmech/0.10/src/Libstatmech.c:35:
/usr/include/string.h:546:33: error: nonnull argument references non-pointer operand (argument 3, operand 4)
THROW attribute_pure __nonnull ((1, 2, 4));
^
../../build/Makefile:246: recipe for target '../../obj/Libstatmech.o' failed
make: *** [../../obj/Libstatmech.o] Error 1

Looking forward to your reply

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- Bradley S. Meyer - 2018-05-18
  
  Sorry for the delayed response. Could you let me know what happens if you do
  
  cd nucnet-tools-code/vendor/libstatmech/0.10/examples
  make clean
  make all
  
  Thanks.
  
  Last edit: Bradley S. Meyer 2018-05-18
  
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- Bradley S. Meyer - 2018-05-18
  
  On further sleuthing, I saw this from stackoverflow. You might see what happens if you edit the nucnet-tools-code/examples/graph/Makefile to change the lines
  
  #=============================================================================== # Add C++ 11. #=============================================================================== CC += -std=c++11
  
  to instead read
  
  #=============================================================================== # Add C++ 11. #=============================================================================== CC += -D__USE_XOPEN2K8 -std=c++11
  
  and recompile. Let me know if that works. Thanks.
  
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Anonymous - 2018-05-20

The following commands, it works well, there is no error:
cd nucnet-tools-code/vendor/libstatmech/0.10/examples
make clean
make all
gcc -ansi -pedantic -Werror -Wall -W -Wconversion -Wshadow -Wpointer-arith -Wcast-qual -Wcast-align -Wwrite-strings -fshort-enums -fno-common -g -Wmissing-prototypes -Wstrict-prototypes -Wnested-externs -O0 -I../src/ xml2-config --cflags gsl-config --cflags -c -o tmp/Libstatmech.o ../src/Libstatmech.c
gcc -ansi -pedantic -Werror -Wall -W -Wconversion -Wshadow -Wpointer-arith -Wcast-qual -Wcast-align -Wwrite-strings -fshort-enums -fno-common -g -Wmissing-prototypes -Wstrict-prototypes -Wnested-externs -O0 -I../src/ xml2-config --cflags gsl-config --cflags -c -o tmp/boson_ground_state_functions.o boson_ground_state_functions.c
gcc -ansi -pedantic -Werror -Wall -W -Wconversion -Wshadow -Wpointer-arith -Wcast-qual -Wcast-align -Wwrite-strings -fshort-enums -fno-common -g -Wmissing-prototypes -Wstrict-prototypes -Wnested-externs -O0 -I../src/ xml2-config --cflags gsl-config --cflags -c -o ./tmp/create_fermion.o create_fermion.c
gcc -ansi -pedantic -Werror -Wall -W -Wconversion -Wshadow -Wpointer-arith -Wcast-qual -Wcast-align -Wwrite-strings -fshort-enums -fno-common -g -Wmissing-prototypes -Wstrict-prototypes -Wnested-externs -O0 -I../src/ xml2-config --cflags gsl-config --cflags ./tmp/Libstatmech.o ./tmp/boson_ground_state_functions.o ./tmp/create_fermion.o xml2-config --libs gsl-config --libs -o create_fermion
gcc -ansi -pedantic -Werror -Wall -W -Wconversion -Wshadow -Wpointer-arith -Wcast-qual -Wcast-align -Wwrite-strings -fshort-enums -fno-common -g -Wmissing-prototypes -Wstrict-prototypes -Wnested-externs -O0 -I../src/ xml2-config --cflags gsl-config --cflags -c -o ./tmp/fermion_accuracy.o fermion_accuracy.c
gcc -ansi -pedantic -Werror -Wall -W -Wconversion -Wshadow -Wpointer-arith -Wcast-qual -Wcast-align -Wwrite-strings -fshort-enums -fno-common -g -Wmissing-prototypes -Wstrict-prototypes -Wnested-externs -O0 -I../src/ xml2-config --cflags gsl-config --cflags ./tmp/Libstatmech.o ./tmp/boson_ground_state_functions.o ./tmp/fermion_accuracy.o xml2-config --libs gsl-config --libs -o fermion_accuracy
gcc -ansi -pedantic -Werror -Wall -W -Wconversion -Wshadow -Wpointer-arith -Wcast-qual -Wcast-align -Wwrite-strings -fshort-enums -fno-common -g -Wmissing-prototypes -Wstrict-prototypes -Wnested-externs -O0 -I../src/ xml2-config --cflags gsl-config --cflags -c -o ./tmp/pressure_integrand.o pressure_integrand.c
gcc -ansi -pedantic -Werror -Wall -W -Wconversion -Wshadow -Wpointer-arith -Wcast-qual -Wcast-align -Wwrite-strings -fshort-enums -fno-common -g -Wmissing-prototypes -Wstrict-prototypes -Wnested-externs -O0 -I../src/ xml2-config --cflags gsl-config --cflags ./tmp/Libstatmech.o ./tmp/boson_ground_state_functions.o ./tmp/pressure_integrand.o xml2-config --libs gsl-config --libs -o pressure_integrand
gcc -ansi -pedantic -Werror -Wall -W -Wconversion -Wshadow -Wpointer-arith -Wcast-qual -Wcast-align -Wwrite-strings -fshort-enums -fno-common -g -Wmissing-prototypes -Wstrict-prototypes -Wnested-externs -O0 -I../src/ xml2-config --cflags gsl-config --cflags -c -o ./tmp/thermodynamic.o thermodynamic.c
gcc -ansi -pedantic -Werror -Wall -W -Wconversion -Wshadow -Wpointer-arith -Wcast-qual -Wcast-align -Wwrite-strings -fshort-enums -fno-common -g -Wmissing-prototypes -Wstrict-prototypes -Wnested-externs -O0 -I../src/ xml2-config --cflags gsl-config --cflags ./tmp/Libstatmech.o ./tmp/boson_ground_state_functions.o ./tmp/thermodynamic.o xml2-config --libs gsl-config --libs -o thermodynamic
gcc -ansi -pedantic -Werror -Wall -W -Wconversion -Wshadow -Wpointer-arith -Wcast-qual -Wcast-align -Wwrite-strings -fshort-enums -fno-common -g -Wmissing-prototypes -Wstrict-prototypes -Wnested-externs -O0 -I../src/ xml2-config --cflags gsl-config --cflags -c -o ./tmp/fermion_derivatives.o fermion_derivatives.c
gcc -ansi -pedantic -Werror -Wall -W -Wconversion -Wshadow -Wpointer-arith -Wcast-qual -Wcast-align -Wwrite-strings -fshort-enums -fno-common -g -Wmissing-prototypes -Wstrict-prototypes -Wnested-externs -O0 -I../src/ xml2-config --cflags gsl-config --cflags ./tmp/Libstatmech.o ./tmp/boson_ground_state_functions.o ./tmp/fermion_derivatives.o xml2-config --libs gsl-config --libs -o fermion_derivatives
gcc -ansi -pedantic -Werror -Wall -W -Wconversion -Wshadow -Wpointer-arith -Wcast-qual -Wcast-align -Wwrite-strings -fshort-enums -fno-common -g -Wmissing-prototypes -Wstrict-prototypes -Wnested-externs -O0 -I../src/ xml2-config --cflags gsl-config --cflags -c -o ./tmp/heat_capacity_vs_rho.o heat_capacity_vs_rho.c
gcc -ansi -pedantic -Werror -Wall -W -Wconversion -Wshadow -Wpointer-arith -Wcast-qual -Wcast-align -Wwrite-strings -fshort-enums -fno-common -g -Wmissing-prototypes -Wstrict-prototypes -Wnested-externs -O0 -I../src/ xml2-config --cflags gsl-config --cflags ./tmp/Libstatmech.o ./tmp/boson_ground_state_functions.o ./tmp/heat_capacity_vs_rho.o xml2-config --libs gsl-config --libs -o heat_capacity_vs_rho
gcc -ansi -pedantic -Werror -Wall -W -Wconversion -Wshadow -Wpointer-arith -Wcast-qual -Wcast-align -Wwrite-strings -fshort-enums -fno-common -g -Wmissing-prototypes -Wstrict-prototypes -Wnested-externs -O0 -I../src/ xml2-config --cflags gsl-config --cflags -c -o ./tmp/thomas_fermi.o thomas_fermi.c
gcc -ansi -pedantic -Werror -Wall -W -Wconversion -Wshadow -Wpointer-arith -Wcast-qual -Wcast-align -Wwrite-strings -fshort-enums -fno-common -g -Wmissing-prototypes -Wstrict-prototypes -Wnested-externs -O0 -I../src/ xml2-config --cflags gsl-config --cflags ./tmp/Libstatmech.o ./tmp/boson_ground_state_functions.o ./tmp/thomas_fermi.o xml2-config --libs gsl-config --libs -o thomas_fermi
gcc -ansi -pedantic -Werror -Wall -W -Wconversion -Wshadow -Wpointer-arith -Wcast-qual -Wcast-align -Wwrite-strings -fshort-enums -fno-common -g -Wmissing-prototypes -Wstrict-prototypes -Wnested-externs -O0 -I../src/ xml2-config --cflags gsl-config --cflags -c -o ./tmp/create_boson.o create_boson.c
gcc -ansi -pedantic -Werror -Wall -W -Wconversion -Wshadow -Wpointer-arith -Wcast-qual -Wcast-align -Wwrite-strings -fshort-enums -fno-common -g -Wmissing-prototypes -Wstrict-prototypes -Wnested-externs -O0 -I../src/ xml2-config --cflags gsl-config --cflags ./tmp/Libstatmech.o ./tmp/boson_ground_state_functions.o ./tmp/create_boson.o xml2-config --libs gsl-config --libs -o create_boson
gcc -ansi -pedantic -Werror -Wall -W -Wconversion -Wshadow -Wpointer-arith -Wcast-qual -Wcast-align -Wwrite-strings -fshort-enums -fno-common -g -Wmissing-prototypes -Wstrict-prototypes -Wnested-externs -O0 -I../src/ xml2-config --cflags gsl-config --cflags -c -o ./tmp/boson_function.o boson_function.c
gcc -ansi -pedantic -Werror -Wall -W -Wconversion -Wshadow -Wpointer-arith -Wcast-qual -Wcast-align -Wwrite-strings -fshort-enums -fno-common -g -Wmissing-prototypes -Wstrict-prototypes -Wnested-externs -O0 -I../src/ xml2-config --cflags gsl-config --cflags ./tmp/Libstatmech.o ./tmp/boson_ground_state_functions.o ./tmp/boson_function.o xml2-config --libs gsl-config --libs -o boson_function
gcc -ansi -pedantic -Werror -Wall -W -Wconversion -Wshadow -Wpointer-arith -Wcast-qual -Wcast-align -Wwrite-strings -fshort-enums -fno-common -g -Wmissing-prototypes -Wstrict-prototypes -Wnested-externs -O0 -I../src/ xml2-config --cflags gsl-config --cflags -c -o ./tmp/boson_derivatives.o boson_derivatives.c
gcc -ansi -pedantic -Werror -Wall -W -Wconversion -Wshadow -Wpointer-arith -Wcast-qual -Wcast-align -Wwrite-strings -fshort-enums -fno-common -g -Wmissing-prototypes -Wstrict-prototypes -Wnested-externs -O0 -I../src/ xml2-config --cflags gsl-config --cflags ./tmp/Libstatmech.o ./tmp/boson_ground_state_functions.o ./tmp/boson_derivatives.o xml2-config --libs gsl-config --libs -o boson_derivatives
gcc -ansi -pedantic -Werror -Wall -W -Wconversion -Wshadow -Wpointer-arith -Wcast-qual -Wcast-align -Wwrite-strings -fshort-enums -fno-common -g -Wmissing-prototypes -Wstrict-prototypes -Wnested-externs -O0 -I../src/ xml2-config --cflags gsl-config --cflags -c -o ./tmp/photons.o photons.c
gcc -ansi -pedantic -Werror -Wall -W -Wconversion -Wshadow -Wpointer-arith -Wcast-qual -Wcast-align -Wwrite-strings -fshort-enums -fno-common -g -Wmissing-prototypes -Wstrict-prototypes -Wnested-externs -O0 -I../src/ xml2-config --cflags gsl-config --cflags ./tmp/Libstatmech.o ./tmp/boson_ground_state_functions.o ./tmp/photons.o xml2-config --libs gsl-config --libs -o photons
gcc -ansi -pedantic -Werror -Wall -W -Wconversion -Wshadow -Wpointer-arith -Wcast-qual -Wcast-align -Wwrite-strings -fshort-enums -fno-common -g -Wmissing-prototypes -Wstrict-prototypes -Wnested-externs -O0 -I../src/ xml2-config --cflags gsl-config --cflags -c -o ./tmp/bec_n.o bec_n.c
gcc -ansi -pedantic -Werror -Wall -W -Wconversion -Wshadow -Wpointer-arith -Wcast-qual -Wcast-align -Wwrite-strings -fshort-enums -fno-common -g -Wmissing-prototypes -Wstrict-prototypes -Wnested-externs -O0 -I../src/ xml2-config --cflags gsl-config --cflags ./tmp/Libstatmech.o ./tmp/boson_ground_state_functions.o ./tmp/bec_n.o xml2-config --libs gsl-config --libs -o bec_n
gcc -ansi -pedantic -Werror -Wall -W -Wconversion -Wshadow -Wpointer-arith -Wcast-qual -Wcast-align -Wwrite-strings -fshort-enums -fno-common -g -Wmissing-prototypes -Wstrict-prototypes -Wnested-externs -O0 -I../src/ xml2-config --cflags gsl-config --cflags -c -o ./tmp/bec_T.o bec_T.c
gcc -ansi -pedantic -Werror -Wall -W -Wconversion -Wshadow -Wpointer-arith -Wcast-qual -Wcast-align -Wwrite-strings -fshort-enums -fno-common -g -Wmissing-prototypes -Wstrict-prototypes -Wnested-externs -O0 -I../src/ xml2-config --cflags gsl-config --cflags ./tmp/Libstatmech.o ./tmp/boson_ground_state_functions.o ./tmp/bec_T.o xml2-config --libs gsl-config --libs -o bec_T

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- Bradley S. Meyer - 2018-05-20
  
  Thanks. There is nothing wrong with the libstatmech library or the C compiler. Useful info.
  
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Anonymous - 2018-05-20

after I editted the nucnet-tools-code/examples/graph/Makefile and recompile, the errors are listed here. Thanks

./vendor/libstatmech/0.10/src/Libstatmech.c -o ../../obj/Libstatmech.o
tar xz -C ../../vendor -f ../../vendor/libnuceq.tar.gz
tar: libnuceq/0.7/doc/releases.xml: Cannot open: File exists
tar: libnuceq/0.7/doc/tex/libnuceq.tex: Cannot open: File exists
tar: libnuceq/0.7/doc/tex/low_temp.tex: Cannot open: File exists
tar: libnuceq/0.7/doc/tex/src/binding.c: Cannot open: File exists
tar: libnuceq/0.7/doc/tex/src/Makefile: Cannot open: File exists
tar: libnuceq/0.7/examples/compare_qse.c: Cannot open: File exists
tar: libnuceq/0.7/examples/compare_wse_screening.c: Cannot open: File exists
tar: libnuceq/0.7/examples/compute_function_integrand_wse.c: Cannot open: File exists
tar: libnuceq/0.7/examples/compute_many_qse.c: Cannot open: File exists
tar: libnuceq/0.7/examples/compute_ng.c: Cannot open: File exists
tar: libnuceq/0.7/examples/compute_nse.c: Cannot open: File exists
tar: libnuceq/0.7/examples/compute_pg.c: Cannot open: File exists
tar: libnuceq/0.7/examples/compute_qse.c: Cannot open: File exists
tar: libnuceq/0.7/examples/compute_rnse.c: Cannot open: File exists
tar: libnuceq/0.7/examples/compute_screened_degen_nse.c: Cannot open: File exists
tar: libnuceq/0.7/examples/compute_wqse.c: Cannot open: File exists
tar: libnuceq/0.7/examples/compute_wse.c: Cannot open: File exists
tar: libnuceq/0.7/examples/compute_wse_from_lepton_number.c: Cannot open: File exists
tar: libnuceq/0.7/examples/coul_corr.c: Cannot open: File exists
tar: libnuceq/0.7/examples/coul_corr.h: Cannot open: File exists
tar: libnuceq/0.7/examples/examples.xml: Cannot open: File exists
tar: libnuceq/0.7/examples/Makefile: Cannot open: File exists
tar: libnuceq/0.7/examples/README.txt: Cannot open: File exists
tar: libnuceq/0.7/examples/regression_test.sh: Cannot open: File exists
tar: libnuceq/0.7/src/Libnuceq.c: Cannot open: File exists
tar: libnuceq/0.7/src/Libnuceq.h: Cannot open: File exists
tar: libnuceq/0.7/src/README.txt: Cannot open: File exists
tar: libnuceq/0.7/data_pub/example_nuc.xml: Cannot open: File exists
tar: libnuceq/0.7/data_pub/z.txt: Cannot open: File exists
tar: libnuceq/0.7/doc/gnu_fdl_v1.2.txt: Cannot open: File exists
tar: libnuceq/0.7/doc/gnu_gpl_v2.txt: Cannot open: File exists
tar: libnuceq/0.7/doc/tex/figures/fig1.pdf: Cannot open: File exists
tar: libnuceq/0.7/doc/tex/figures/fig2.pdf: Cannot open: File exists
tar: libnuceq/0.7/doc/tex/figures/lower.pdf: Cannot open: File exists
tar: libnuceq/0.7/doc/tex/figures/upper.pdf: Cannot open: File exists
tar: Exiting with failure status due to previous errors
../../build/Makefile:257: recipe for target '../../obj/Libnuceq.o' failed
make: *** [../../obj/Libnuceq.o] Error 2

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- Bradley S. Meyer - 2018-05-20
  
  You seem to have some conflicting libnuceq versions. Please try (in nucnet-tools-code/examples/graph)
  
  make clean_all
  make all_graph
  
  The first command will clean the vendor directory and download anew. Let's see how that works. Best wishes.
  
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Anonymous - 2018-05-27

Dear Professor: these two command give the following errors:

tar xz -C ../../vendor -f ../../vendor/libnuceq.tar.gz
g++ -Werror -Wall -Wpointer-arith -Wwrite-strings -fno-common -g -O0 -fopenmp -Wno-deprecated xml2-config --cflags gsl-config --cflags -I../../vendor/libnucnet/0.32/src -I../../vendor/wn_matrix/0.19/src -I../../vendor/libstatmech/0.10/src -I../../vendor/libnuceq/0.7/src -I../.. -DUSE_XOPEN2K8 -std=c++11 -c ../../vendor/libnuceq/0.7/src/Libnuceq.c -o ../../obj/Libnuceq.o
g++ -Werror -Wall -Wpointer-arith -Wwrite-strings -fno-common -g -O0 -fopenmp -Wno-deprecated xml2-config --cflags gsl-config --cflags -I../../vendor/libnucnet/0.32/src -I../../vendor/wn_matrix/0.19/src -I../../vendor/libstatmech/0.10/src -I../../vendor/libnuceq/0.7/src -I../.. -DUSE_XOPEN2K8 -std=c++11 -c -o ../../obj/auxiliary.o ../../nnt/auxiliary.cpp
In file included from /home/let/mesasdk/include/c++/5.3.1/x86_64-pc-linux-gnu/bits/gthr-default.h:35:0,
from /home/let/mesasdk/include/c++/5.3.1/x86_64-pc-linux-gnu/bits/gthr.h:148,
from /home/let/mesasdk/include/c++/5.3.1/ext/atomicity.h:35,
from /home/let/mesasdk/include/c++/5.3.1/bits/ios_base.h:39,
from /home/let/mesasdk/include/c++/5.3.1/ios:42,
from /home/let/mesasdk/include/c++/5.3.1/istream:38,
from /home/let/mesasdk/include/c++/5.3.1/sstream:38,
from ../../nnt/auxiliary.h:32,
from ../../nnt/auxiliary.cpp:29:
/home/let/mesasdk/include/c++/5.3.1/ext/concurrence.h:122:34: error: cannot convert '<brace-enclosed list="" initializer="">' to 'short int' in initialization
gthread_mutex_t _M_mutex = GTHREAD_MUTEX_INIT;
^
/home/let/mesasdk/include/c++/5.3.1/ext/concurrence.h:177:44: error: cannot convert '<brace-enclosed list="" initializer="">' to 'short int' in initialization
gthread_recursive_mutex_t _M_mutex = GTHREAD_RECURSIVE_MUTEX_INIT;
^
../../build/Makefile:299: recipe for target '../../obj/auxiliary.o' failed
make: *** [../../obj/auxiliary.o] Error 1</brace-enclosed></brace-enclosed>

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- Bradley S. Meyer - 2018-10-24
  
  I apologize. I let this fall through the cracks. I hope you were able to solve this. If not, and if you are still working on this, let me know. Thanks, and best wishes.
  
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Compilation error building graph codes

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Compilation error building graph codes