Dear Brad,
Thanks very mcuh, I have done that as you wrote above and export WN_XML_CHAR=char works for me.
But another problem come as follows:
run_entropy.cpp:32:36: error: boost/numeric/odeint.hpp: No such file or directory
run_entropy.cpp: In function 'int main(int, char)':
run_entropy.cpp:653: error: 'boost::numeric' has not been declared
run_entropy.cpp:653: error: expected primary-expression before '>' token
run_entropy.cpp:653: error: 'stepper' was not declared in this scope
make: * [run_entropy] Error 1
Make failed. Contact project maintainer.
I tried to reinstall the boost and it still come out with the same error.
Thanks very much.
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Thanks for your post. The Odeint library was introduced into Boost in version 1.53.0. It may be that your Boost version is not recent enough. You can try the test_versions code in the examples/misc directory to check:
cd nucnet-tools-code/examples/misc
make test_versions
./test_versions
This blog post describes how to use the latest version of Boost via git. I hope that helps.
Last edit: Bradley S. Meyer 2016-11-13
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Dera Brad,
I have done that and it seemed work for misc directory .cpp file but for the network files it still have the same problem.
cd nucnet-tools-code/examples/misc
./exmaples_make
cd nucnet-tools-code/examples/network
make clean
./exmaples_make
but for the network files still go out this:
run_entropy.cpp:32:36: error: boost/numeric/odeint.hpp: No such file or directory
run_entropy.cpp: In function 'int main(int, char)':
run_entropy.cpp:653: error: 'boost::numeric' has not been declared
run_entropy.cpp:653: error: expected primary-expression before '>' token
run_entropy.cpp:653: error: 'stepper' was not declared in this scope
make: * [run_entropy] Error 1
Make failed. Contact project maintainer.
Thanks very much for your kind answers.
If you would like to refer to this comment somewhere else in this project, copy and paste the following link:
Your version of Boost is 1.41.0. This is very old and certainly before 1.53.0 when Odeint was introduced. Try updating Boost to a recent version.. Then the code should be able to compile. Best wishes.
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The error in making the analysis directory codes is still the xmlStrPrintf error. Fix that by setting the appropriate version of the WN_XML_CHAR environment variable.
The codes in the multi_zone directory need the hdf5 compiler suite. hdf5 can be installed from mac ports, apt-get, or cygwin. Best wishes.
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Topic moved from here:
Dear Brad,
Thanks very mcuh, I have done that as you wrote above and export WN_XML_CHAR=char works for me.
But another problem come as follows:
run_entropy.cpp:32:36: error: boost/numeric/odeint.hpp: No such file or directory
run_entropy.cpp: In function 'int main(int, char)':
run_entropy.cpp:653: error: 'boost::numeric' has not been declared
run_entropy.cpp:653: error: expected primary-expression before '>' token
run_entropy.cpp:653: error: 'stepper' was not declared in this scope
make: * [run_entropy] Error 1
Make failed. Contact project maintainer.
I tried to reinstall the boost and it still come out with the same error.
Thanks very much.
Thanks for your post. The Odeint library was introduced into Boost in version 1.53.0. It may be that your Boost version is not recent enough. You can try the test_versions code in the examples/misc directory to check:
cd nucnet-tools-code/examples/misc
make test_versions
./test_versions
This blog post describes how to use the latest version of Boost via git. I hope that helps.
Last edit: Bradley S. Meyer 2016-11-13
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Dera Brad,
I have done that and it seemed work for misc directory .cpp file but for the network files it still have the same problem.
cd nucnet-tools-code/examples/misc
./exmaples_make
ls
add_properties_to_zone_xml diff_current print_rates_by_xpath
add_properties_to_zone_xml.cpp diff_current.cpp print_rates_by_xpath.cpp
compare_reaction_files_at_t9 examples_make Qvalue_sign_change
compare_reaction_files_at_t9.cpp extend_partf Qvalue_sign_change.cpp
compute_separation_energies extend_partf.cpp reactions_latex
compute_separation_energies.cpp extract_zones_to_xml reactions_latex.cpp
create_equil_zones_from_network extract_zones_to_xml.cpp select_network
create_equil_zones_from_network.cpp Makefile select_network.cpp
create_multi_zone_xml_from_text merge_nuc test_versions
create_multi_zone_xml_from_text.cpp merge_nuc.cpp test_versions.cpp
create_zone_xml_from_text one_time_step update_mass_excesses_from_text
create_zone_xml_from_text.cpp one_time_step.cpp update_mass_excesses_from_text.cpp
cd nucnet-tools-code/examples/network
make clean
./exmaples_make
but for the network files still go out this:
run_entropy.cpp:32:36: error: boost/numeric/odeint.hpp: No such file or directory
run_entropy.cpp: In function 'int main(int, char)':
run_entropy.cpp:653: error: 'boost::numeric' has not been declared
run_entropy.cpp:653: error: expected primary-expression before '>' token
run_entropy.cpp:653: error: 'stepper' was not declared in this scope
make: * [run_entropy] Error 1
Make failed. Contact project maintainer.
Thanks very much for your kind answers.
When you run examples/misc/test_versions:
cd nucnet-tools-code/examples/misc
./test_versions
what version of boost does it report?
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Dear Brad,
The versions are below.
misc]$ ./test_versions
Codes are compiled against:
libxml version 2.7.6
gsl version 1.13
Boost version 1.41.0
Your version of Boost is 1.41.0. This is very old and certainly before 1.53.0 when Odeint was introduced. Try updating Boost to a recent version.. Then the code should be able to compile. Best wishes.
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Dear Brad,
I solved that problem above, but another come, sorry for the problems:
In analysis directory:
make: *** [../../obj/WnMatrix.o] Error 1
Make failed. Contact project maintainer.
In multi_zone directory:
/bin/sh: h5c++: command not found
make: *** [../../obj/WnMatrix.o] Error 127
analysis]# ./examples_make
At revision 513.
tar xz -C ../../vendor -f ../../vendor/wn_matrix.tar.gz
g++ -Werror -Wall -Wpointer-arith -Wwrite-strings -fshort-enums -fno-common -g -O0 -fopenmp -Wno-deprecated
xml2-config --cflagsgsl-config --cflags-I../../vendor/libnucnet/0.28/src -I../../vendor/wn_matrix/0.18/src -I../../vendor/libstatmech/0.10/src -I../../vendor/libnuceq/0.7/src -I../.. -c ../../vendor/wn_matrix/0.18/src/WnMatrix.c -o ../../obj/WnMatrix.o../../vendor/wn_matrix/0.18/src/WnMatrix.c: In function 'int WnMatrixassignElement(WnMatrix, size_t, size_t, double)':
../../vendor/wn_matrix/0.18/src/WnMatrix.c:130: error: invalid conversion from 'const WnChar' to 'const char'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:130: error: initializing argument 3 of 'int xmlStrPrintf(xmlChar, int, const char, ...)'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:131: error: invalid conversion from 'const WnChar' to 'const char'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:131: error: initializing argument 3 of 'int xmlStrPrintf(xmlChar, int, const char*, ...)'
../../vendor/wn_matrix/0.18/src/WnMatrix.c: In function 'int WnMatrixupdateElement(WnMatrix, size_t, size_t, double)':
../../vendor/wn_matrix/0.18/src/WnMatrix.c:244: error: invalid conversion from 'const WnChar' to 'const char'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:244: error: initializing argument 3 of 'int xmlStrPrintf(xmlChar, int, const char, ...)'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:245: error: invalid conversion from 'const WnChar' to 'const char'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:245: error: initializing argument 3 of 'int xmlStrPrintf(xmlChar, int, const char, ...)'
../../vendor/wn_matrix/0.18/src/WnMatrix.c: In function 'int WnMatrixremoveElement(WnMatrix, size_t, size_t)':
../../vendor/wn_matrix/0.18/src/WnMatrix.c:282: error: invalid conversion from 'const WnChar' to 'const char'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:282: error: initializing argument 3 of 'int xmlStrPrintf(xmlChar, int, const char, ...)'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:283: error: invalid conversion from 'const WnChar' to 'const char'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:283: error: initializing argument 3 of 'int xmlStrPrintf(xmlChar, int, const char*, ...)'
../../vendor/wn_matrix/0.18/src/WnMatrix.c: In function 'double WnMatrixgetElement(WnMatrix, size_t, size_t)':
../../vendor/wn_matrix/0.18/src/WnMatrix.c:322: error: invalid conversion from 'const WnChar' to 'const char'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:322: error: initializing argument 3 of 'int xmlStrPrintf(xmlChar, int, const char, ...)'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:323: error: invalid conversion from 'const WnChar' to 'const char'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:323: error: initializing argument 3 of 'int xmlStrPrintf(xmlChar, int, const char, ...)'
../../vendor/wn_matrix/0.18/src/WnMatrix.c: In function 'WnMatrixLine* WnMatrixgetRow(WnMatrix, size_t)':
../../vendor/wn_matrix/0.18/src/WnMatrix.c:1044: error: invalid conversion from 'const WnChar' to 'const char'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:1044: error: initializing argument 3 of 'int xmlStrPrintf(xmlChar, int, const char, ...)'
../../vendor/wn_matrix/0.18/src/WnMatrix.c: In function 'WnMatrixLine* WnMatrixgetColumn(WnMatrix, size_t)':
../../vendor/wn_matrix/0.18/src/WnMatrix.c:1108: error: invalid conversion from 'const WnChar' to 'const char'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:1108: error: initializing argument 3 of 'int xmlStrPrintf(xmlChar, int, const char, ...)'
../../vendor/wn_matrix/0.18/src/WnMatrix.c: In function 'xmlDoc WnMatrixCoomakeXmlDocument(WnMatrixCoo, const WnChar)':
../../vendor/wn_matrix/0.18/src/WnMatrix.c:1903: error: invalid conversion from 'const WnChar' to 'const char'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:1903: error: initializing argument 3 of 'int xmlStrPrintf(xmlChar, int, const char, ...)'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:1920: error: invalid conversion from 'const WnChar' to 'const char'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:1920: error: initializing argument 3 of 'int xmlStrPrintf(xmlChar, int, const char, ...)'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:1937: error: invalid conversion from 'const WnChar' to 'const char'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:1937: error: initializing argument 3 of 'int xmlStrPrintf(xmlChar, int, const char, ...)'
../../vendor/wn_matrix/0.18/src/WnMatrix.c: In function 'xmlDoc* WnMatrixCsrmakeXmlDocument(WnMatrixCsr, const WnChar)':
../../vendor/wn_matrix/0.18/src/WnMatrix.c:2095: error: invalid conversion from 'const WnChar' to 'const char'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:2095: error: initializing argument 3 of 'int xmlStrPrintf(xmlChar, int, const char, ...)'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:2140: error: invalid conversion from 'const WnChar' to 'const char'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:2140: error: initializing argument 3 of 'int xmlStrPrintf(xmlChar, int, const char, ...)'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:2157: error: invalid conversion from 'const WnChar' to 'const char'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:2157: error: initializing argument 3 of 'int xmlStrPrintf(xmlChar, int, const char, ...)'
../../vendor/wn_matrix/0.18/src/WnMatrix.c: In function 'xmlDoc WnMatrixYalemakeXmlDocument(WnMatrixYale, const WnChar)':
../../vendor/wn_matrix/0.18/src/WnMatrix.c:2320: error: invalid conversion from 'const WnChar' to 'const char'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:2320: error: initializing argument 3 of 'int xmlStrPrintf(xmlChar, int, const char, ...)'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:2337: error: invalid conversion from 'const WnChar' to 'const char'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:2337: error: initializing argument 3 of 'int xmlStrPrintf(xmlChar, int, const char, ...)'
../../vendor/wn_matrix/0.18/src/WnMatrix.c: In function 'xmlDoc* WnMatrixmake_gsl_vector_xml_document(gsl_vector, const WnChar)':
../../vendor/wn_matrix/0.18/src/WnMatrix.c:2899: error: invalid conversion from 'const WnChar' to 'const char'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:2899: error: initializing argument 3 of 'int xmlStrPrintf(xmlChar, int, const char, ...)'
make: [../../obj/WnMatrix.o] Error 1
rm -fr ../../obj
rm ../../nnt/string_defs.h
tar xz -C ../../vendor -f ../../vendor/wn_matrix.tar.gz
g++ -Werror -Wall -Wpointer-arith -Wwrite-strings -fshort-enums -fno-common -g -O0 -fopenmp -Wno-deprecated
xml2-config --cflagsgsl-config --cflags-I../../vendor/libnucnet/0.28/src -I../../vendor/wn_matrix/0.18/src -I../../vendor/libstatmech/0.10/src -I../../vendor/libnuceq/0.7/src -I../.. -c ../../vendor/wn_matrix/0.18/src/WnMatrix.c -o ../../obj/WnMatrix.o../../vendor/wn_matrix/0.18/src/WnMatrix.c: In function 'int WnMatrixassignElement(WnMatrix, size_t, size_t, double)':
../../vendor/wn_matrix/0.18/src/WnMatrix.c:130: error: invalid conversion from 'const WnChar' to 'const char'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:130: error: initializing argument 3 of 'int xmlStrPrintf(xmlChar, int, const char, ...)'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:131: error: invalid conversion from 'const WnChar' to 'const char'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:131: error: initializing argument 3 of 'int xmlStrPrintf(xmlChar, int, const char*, ...)'
../../vendor/wn_matrix/0.18/src/WnMatrix.c: In function 'int WnMatrixupdateElement(WnMatrix, size_t, size_t, double)':
../../vendor/wn_matrix/0.18/src/WnMatrix.c:244: error: invalid conversion from 'const WnChar' to 'const char'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:244: error: initializing argument 3 of 'int xmlStrPrintf(xmlChar, int, const char, ...)'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:245: error: invalid conversion from 'const WnChar' to 'const char'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:245: error: initializing argument 3 of 'int xmlStrPrintf(xmlChar, int, const char, ...)'
../../vendor/wn_matrix/0.18/src/WnMatrix.c: In function 'int WnMatrixremoveElement(WnMatrix, size_t, size_t)':
../../vendor/wn_matrix/0.18/src/WnMatrix.c:282: error: invalid conversion from 'const WnChar' to 'const char'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:282: error: initializing argument 3 of 'int xmlStrPrintf(xmlChar, int, const char, ...)'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:283: error: invalid conversion from 'const WnChar' to 'const char'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:283: error: initializing argument 3 of 'int xmlStrPrintf(xmlChar, int, const char*, ...)'
../../vendor/wn_matrix/0.18/src/WnMatrix.c: In function 'double WnMatrixgetElement(WnMatrix, size_t, size_t)':
../../vendor/wn_matrix/0.18/src/WnMatrix.c:322: error: invalid conversion from 'const WnChar' to 'const char'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:322: error: initializing argument 3 of 'int xmlStrPrintf(xmlChar, int, const char, ...)'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:323: error: invalid conversion from 'const WnChar' to 'const char'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:323: error: initializing argument 3 of 'int xmlStrPrintf(xmlChar, int, const char, ...)'
../../vendor/wn_matrix/0.18/src/WnMatrix.c: In function 'WnMatrixLine* WnMatrixgetRow(WnMatrix, size_t)':
../../vendor/wn_matrix/0.18/src/WnMatrix.c:1044: error: invalid conversion from 'const WnChar' to 'const char'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:1044: error: initializing argument 3 of 'int xmlStrPrintf(xmlChar, int, const char, ...)'
../../vendor/wn_matrix/0.18/src/WnMatrix.c: In function 'WnMatrixLine* WnMatrixgetColumn(WnMatrix, size_t)':
../../vendor/wn_matrix/0.18/src/WnMatrix.c:1108: error: invalid conversion from 'const WnChar' to 'const char'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:1108: error: initializing argument 3 of 'int xmlStrPrintf(xmlChar, int, const char, ...)'
../../vendor/wn_matrix/0.18/src/WnMatrix.c: In function 'xmlDoc WnMatrixCoomakeXmlDocument(WnMatrixCoo, const WnChar)':
../../vendor/wn_matrix/0.18/src/WnMatrix.c:1903: error: invalid conversion from 'const WnChar' to 'const char'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:1903: error: initializing argument 3 of 'int xmlStrPrintf(xmlChar, int, const char, ...)'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:1920: error: invalid conversion from 'const WnChar' to 'const char'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:1920: error: initializing argument 3 of 'int xmlStrPrintf(xmlChar, int, const char, ...)'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:1937: error: invalid conversion from 'const WnChar' to 'const char'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:1937: error: initializing argument 3 of 'int xmlStrPrintf(xmlChar, int, const char, ...)'
../../vendor/wn_matrix/0.18/src/WnMatrix.c: In function 'xmlDoc* WnMatrixCsrmakeXmlDocument(WnMatrixCsr, const WnChar)':
../../vendor/wn_matrix/0.18/src/WnMatrix.c:2095: error: invalid conversion from 'const WnChar' to 'const char'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:2095: error: initializing argument 3 of 'int xmlStrPrintf(xmlChar, int, const char, ...)'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:2140: error: invalid conversion from 'const WnChar' to 'const char'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:2140: error: initializing argument 3 of 'int xmlStrPrintf(xmlChar, int, const char, ...)'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:2157: error: invalid conversion from 'const WnChar' to 'const char'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:2157: error: initializing argument 3 of 'int xmlStrPrintf(xmlChar, int, const char, ...)'
../../vendor/wn_matrix/0.18/src/WnMatrix.c: In function 'xmlDoc WnMatrixYalemakeXmlDocument(WnMatrixYale, const WnChar)':
../../vendor/wn_matrix/0.18/src/WnMatrix.c:2320: error: invalid conversion from 'const WnChar' to 'const char'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:2320: error: initializing argument 3 of 'int xmlStrPrintf(xmlChar, int, const char, ...)'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:2337: error: invalid conversion from 'const WnChar' to 'const char'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:2337: error: initializing argument 3 of 'int xmlStrPrintf(xmlChar, int, const char, ...)'
../../vendor/wn_matrix/0.18/src/WnMatrix.c: In function 'xmlDoc* WnMatrixmake_gsl_vector_xml_document(gsl_vector, const WnChar)':
../../vendor/wn_matrix/0.18/src/WnMatrix.c:2899: error: invalid conversion from 'const WnChar' to 'const char'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:2899: error: initializing argument 3 of 'int xmlStrPrintf(xmlChar, int, const char, ...)'
make: [../../obj/WnMatrix.o] Error 1
rm -fr ../../obj
rm ../../nnt/string_defs.h
rm -fr ../../vendor
wget http://sourceforge.net/projects//wnmatrix/files/wn_matrix/wn_matrix_0.18.tar.gz -O ../../vendor/wn_matrix.tar.gz
--2016-11-19 22:03:05-- http://sourceforge.net/projects//wnmatrix/files/wn_matrix/wn_matrix_0.18.tar.gz
Resolving sourceforge.net... 216.34.181.60
Connecting to sourceforge.net|216.34.181.60|:80... connected.
HTTP request sent, awaiting response... 301 Moved Permanently
Location: https://sourceforge.net/projects//wnmatrix/files/wn_matrix/wn_matrix_0.18.tar.gz [following]
--2016-11-19 22:03:05-- https://sourceforge.net/projects//wnmatrix/files/wn_matrix/wn_matrix_0.18.tar.gz
Connecting to sourceforge.net|216.34.181.60|:443... connected.
HTTP request sent, awaiting response... 302 Found
Location: https://sourceforge.net/projects/wnmatrix/files/wn_matrix/wn_matrix_0.18.tar.gz/download [following]
--2016-11-19 22:03:06-- https://sourceforge.net/projects/wnmatrix/files/wn_matrix/wn_matrix_0.18.tar.gz/download
Connecting to sourceforge.net|216.34.181.60|:443... connected.
HTTP request sent, awaiting response... 302 Found
Location: http://downloads.sourceforge.net/project/wnmatrix/wn_matrix/wn_matrix_0.18.tar.gz?r=&ts=1479560587&use_mirror=jaist [following]
--2016-11-19 22:03:07-- http://downloads.sourceforge.net/project/wnmatrix/wn_matrix/wn_matrix_0.18.tar.gz?r=&ts=1479560587&use_mirror=jaist
Resolving downloads.sourceforge.net... 216.34.181.59
Connecting to downloads.sourceforge.net|216.34.181.59|:80... connected.
HTTP request sent, awaiting response... 302 Found
Location: http://jaist.dl.sourceforge.net/project/wnmatrix/wn_matrix/wn_matrix_0.18.tar.gz [following]
--2016-11-19 22:03:07-- http://jaist.dl.sourceforge.net/project/wnmatrix/wn_matrix/wn_matrix_0.18.tar.gz
Resolving jaist.dl.sourceforge.net... 150.65.7.130, 2001:df0:2ed:feed::feed
Connecting to jaist.dl.sourceforge.net|150.65.7.130|:80... connected.
HTTP request sent, awaiting response... 200 OK
Length: 192418 (188K) [application/x-gzip]
Saving to: "../../vendor/wn_matrix.tar.gz"
100%[=================================================================>] 192,418 --.-K/s in 0.04s
2016-11-19 22:03:07 (4.29 MB/s) - "../../vendor/wn_matrix.tar.gz" saved [192418/192418]
tar xz -C ../../vendor -f ../../vendor/wn_matrix.tar.gz
g++ -Werror -Wall -Wpointer-arith -Wwrite-strings -fshort-enums -fno-common -g -O0 -fopenmp -Wno-deprecated
xml2-config --cflagsgsl-config --cflags-I../../vendor/libnucnet/0.28/src -I../../vendor/wn_matrix/0.18/src -I../../vendor/libstatmech/0.10/src -I../../vendor/libnuceq/0.7/src -I../.. -c ../../vendor/wn_matrix/0.18/src/WnMatrix.c -o ../../obj/WnMatrix.o../../vendor/wn_matrix/0.18/src/WnMatrix.c: In function 'int WnMatrixassignElement(WnMatrix, size_t, size_t, double)':
../../vendor/wn_matrix/0.18/src/WnMatrix.c:130: error: invalid conversion from 'const WnChar' to 'const char'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:130: error: initializing argument 3 of 'int xmlStrPrintf(xmlChar, int, const char, ...)'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:131: error: invalid conversion from 'const WnChar' to 'const char'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:131: error: initializing argument 3 of 'int xmlStrPrintf(xmlChar, int, const char*, ...)'
../../vendor/wn_matrix/0.18/src/WnMatrix.c: In function 'int WnMatrixupdateElement(WnMatrix, size_t, size_t, double)':
../../vendor/wn_matrix/0.18/src/WnMatrix.c:244: error: invalid conversion from 'const WnChar' to 'const char'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:244: error: initializing argument 3 of 'int xmlStrPrintf(xmlChar, int, const char, ...)'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:245: error: invalid conversion from 'const WnChar' to 'const char'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:245: error: initializing argument 3 of 'int xmlStrPrintf(xmlChar, int, const char, ...)'
../../vendor/wn_matrix/0.18/src/WnMatrix.c: In function 'int WnMatrixremoveElement(WnMatrix, size_t, size_t)':
../../vendor/wn_matrix/0.18/src/WnMatrix.c:282: error: invalid conversion from 'const WnChar' to 'const char'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:282: error: initializing argument 3 of 'int xmlStrPrintf(xmlChar, int, const char, ...)'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:283: error: invalid conversion from 'const WnChar' to 'const char'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:283: error: initializing argument 3 of 'int xmlStrPrintf(xmlChar, int, const char*, ...)'
../../vendor/wn_matrix/0.18/src/WnMatrix.c: In function 'double WnMatrixgetElement(WnMatrix, size_t, size_t)':
../../vendor/wn_matrix/0.18/src/WnMatrix.c:322: error: invalid conversion from 'const WnChar' to 'const char'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:322: error: initializing argument 3 of 'int xmlStrPrintf(xmlChar, int, const char, ...)'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:323: error: invalid conversion from 'const WnChar' to 'const char'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:323: error: initializing argument 3 of 'int xmlStrPrintf(xmlChar, int, const char, ...)'
../../vendor/wn_matrix/0.18/src/WnMatrix.c: In function 'WnMatrixLine* WnMatrixgetRow(WnMatrix, size_t)':
../../vendor/wn_matrix/0.18/src/WnMatrix.c:1044: error: invalid conversion from 'const WnChar' to 'const char'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:1044: error: initializing argument 3 of 'int xmlStrPrintf(xmlChar, int, const char, ...)'
../../vendor/wn_matrix/0.18/src/WnMatrix.c: In function 'WnMatrixLine* WnMatrixgetColumn(WnMatrix, size_t)':
../../vendor/wn_matrix/0.18/src/WnMatrix.c:1108: error: invalid conversion from 'const WnChar' to 'const char'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:1108: error: initializing argument 3 of 'int xmlStrPrintf(xmlChar, int, const char, ...)'
../../vendor/wn_matrix/0.18/src/WnMatrix.c: In function 'xmlDoc WnMatrixCoomakeXmlDocument(WnMatrixCoo, const WnChar)':
../../vendor/wn_matrix/0.18/src/WnMatrix.c:1903: error: invalid conversion from 'const WnChar' to 'const char'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:1903: error: initializing argument 3 of 'int xmlStrPrintf(xmlChar, int, const char, ...)'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:1920: error: invalid conversion from 'const WnChar' to 'const char'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:1920: error: initializing argument 3 of 'int xmlStrPrintf(xmlChar, int, const char, ...)'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:1937: error: invalid conversion from 'const WnChar' to 'const char'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:1937: error: initializing argument 3 of 'int xmlStrPrintf(xmlChar, int, const char, ...)'
../../vendor/wn_matrix/0.18/src/WnMatrix.c: In function 'xmlDoc* WnMatrixCsrmakeXmlDocument(WnMatrixCsr, const WnChar)':
../../vendor/wn_matrix/0.18/src/WnMatrix.c:2095: error: invalid conversion from 'const WnChar' to 'const char'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:2095: error: initializing argument 3 of 'int xmlStrPrintf(xmlChar, int, const char, ...)'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:2140: error: invalid conversion from 'const WnChar' to 'const char'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:2140: error: initializing argument 3 of 'int xmlStrPrintf(xmlChar, int, const char, ...)'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:2157: error: invalid conversion from 'const WnChar' to 'const char'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:2157: error: initializing argument 3 of 'int xmlStrPrintf(xmlChar, int, const char, ...)'
../../vendor/wn_matrix/0.18/src/WnMatrix.c: In function 'xmlDoc WnMatrixYalemakeXmlDocument(WnMatrixYale, const WnChar)':
../../vendor/wn_matrix/0.18/src/WnMatrix.c:2320: error: invalid conversion from 'const WnChar' to 'const char'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:2320: error: initializing argument 3 of 'int xmlStrPrintf(xmlChar, int, const char, ...)'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:2337: error: invalid conversion from 'const WnChar' to 'const char'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:2337: error: initializing argument 3 of 'int xmlStrPrintf(xmlChar, int, const char, ...)'
../../vendor/wn_matrix/0.18/src/WnMatrix.c: In function 'xmlDoc* WnMatrixmake_gsl_vector_xml_document(gsl_vector, const WnChar)':
../../vendor/wn_matrix/0.18/src/WnMatrix.c:2899: error: invalid conversion from 'const WnChar' to 'const char'
../../vendor/wn_matrix/0.18/src/WnMatrix.c:2899: error: initializing argument 3 of 'int xmlStrPrintf(xmlChar, int, const char, ...)'
make: *** [../../obj/WnMatrix.o] Error 1
Make failed. Contact project maintainer.
The error in making the analysis directory codes is still the xmlStrPrintf error. Fix that by setting the appropriate version of the WN_XML_CHAR environment variable.
The codes in the multi_zone directory need the hdf5 compiler suite. hdf5 can be installed from mac ports, apt-get, or cygwin. Best wishes.