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Problem running jina_to_webnucleo

2018-09-09
2018-09-14
  • Bradley S. Meyer

    Moved from here

    Dera Prof. Meyer
    As there are something wrong to download xml type data from JINA database, I try to use your jina_to_webnucleo tools. But when I try
    ./nuclideconverter ../nucnet-tools-code/datapub/jinatowebnucleo/nuclidedata/winvnev2.0.dat nuclides.xml
    It gives me
    Segmentation fault (core dumped)
    Do you know why?
    Thank you very much!

     
    • Bradley S. Meyer

      Thanks for your post. I presume you did the following steps:

      mkdir projects
      cd projects
      svn checkout svn://svn.code.sf.net/p/nucnet-projects/code/trunk/projects/jina_to_webnucleo

      ./project_make
      make jina_to_webnucleo_data
      ./nuclide_converter ../nucnet-tools-code/data_pub/jina_to_webnucleo/nuclide_data/winvne_v2.0.dat nuclides.xml

      and that this last command is where you had the error (note that it is all on one line). If so, can you let me know what operating system you are using (linux, mac, windows ...) and what compiler (gcc?) and what version, which you can find by

      gcc -v

      Let me know. Best wishes.

       

      Last edit: Bradley S. Meyer 2018-09-09
  • Anonymous

    Anonymous - 2018-09-10

    Dear Prof. Meyer,

    Yes, I have followed all the steps. My operating system is linux, and the gcc version is
    gcc version 4.8.4

    It is interesting that
    ./reactionconverter ../nucnet-tools-code/datapub/jinatowebnucleo/reactiondata/20140918default2 reactiondata.xml
    works well. But the ./nuclideconverter doesn't work as mentioned.

    Luckily, the nuclide data can be download from JINA database, and the ./reactionconverter works well (reaction data can't be download from JINA db). So I actually has the data I need to follow your other blogs for the present.

    Anyhow, Segmentation fault (core dumped) in ./nuclideconverter is still a problem.

    Thank you for reading and reply.

     
    • Bradley S. Meyer

      Thanks for your post, and sorry for the delayed response. Unfortunately, I cannot reproduce your error. Could you try the following:

      gdb -v

      Hopefully, you have the debugger. If so:

      gdb ./nuclide_converter
      (gdb) run ../nucnet-tools-code/data_pub/jina_to_webnucleo/nuclide_data/winvne_v2.0.dat nuclides.xml

      That will show where the problem is. Send me the output. Thanks, and best wishes.

       

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