System WIndows 7x64, INTEL HD 3000 - HP Drivers, Notepad++ in version 5.9.4
Same issue using a Dell Vostro, Win 7 x64 with Intel 4500 MHD graphics and 1.6Mb file.
Appears to be related to the "Navigation Bar".
Disabling the Navigation Bar (from "Plugins", "Compare") resulted in it no longer happening.
You seem to have CSS turned off.
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I have the same problem using Notepad++ v.5.9.4 using Compare Plugin 1.5.6 on a Windows 7 64-bit machine with a Intel(R) HD Graphics 3000 chip (Dell Inspiron E6400 series). Usually compare works just fine, sometimes it flickers once and in rare cases it goes completely haywhire and I need to pull the battery from my laptop to recover.
Enjoying notepad++ for some time at work. But noticed that the compare plugin has broken down since the last time I used it.
When I use it and scroll with mouse screens go off for a while and view restarts.
Also using Intel HD graphics on HP Elitebook Folio 1040 with Windows 7 64bit.
When I close the other view and navbar Notepad++ works again as usually.
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