svn+ssh://bugman@.../svn/relax/1.3
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r9411 | bugman | 2009-08-28 12:24:03 +0200 (Fri, 28 Aug 2009) | 3 lines
Added a check for the unimplemented constraints in the frame order code.
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r9412 | bugman | 2009-08-28 18:01:25 +0200 (Fri, 28 Aug 2009) | 3 lines
Created the 'rigid' frame order model.
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r9413 | bugman | 2009-08-31 17:49:38 +0200 (Mon, 31 Aug 2009) | 5 lines
Constraints are now automatically turned off, if the minimisation option is set to True.
These are not yet implemented!
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r9414 | bugman | 2009-08-31 17:52:41 +0200 (Mon, 31 Aug 2009) | 5 lines
Bug fix for the ref_domain() method.
This method now works if no domain names have been associated with the tensors.
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r9415 | bugman | 2009-08-31 18:08:22 +0200 (Mon, 31 Aug 2009) | 5 lines
Fix for the turning off of minimisation constraints.
The algorithm needs to also change.
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r9416 | bugman | 2009-08-31 18:08:39 +0200 (Mon, 31 Aug 2009) | 3 lines
Changed a flag to a bool type.
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r9417 | bugman | 2009-08-31 19:07:18 +0200 (Mon, 31 Aug 2009) | 6 lines
Added __description__ strings to the user function class relax help strings.
The __strip_lead() method has been added to User_fn_class to remove leading whitespace from the
__description__ strings.
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r9418 | bugman | 2009-09-01 10:15:08 +0200 (Tue, 01 Sep 2009) | 6 lines
Rearrangement of the handling of frame order models.
The tensor rotation Euler angles are now model independent, the 'rigid' model is better supported,
and a clear isolation of the isotropic cone model has been made.
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r9419 | bugman | 2009-09-01 11:15:17 +0200 (Tue, 01 Sep 2009) | 3 lines
Added a missing alias for the current data pipe.
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r9420 | bugman | 2009-09-01 11:52:51 +0200 (Tue, 01 Sep 2009) | 3 lines
Added a system test for the frame order 'rigid' model with no tensor rotations and no motion.
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r9421 | bugman | 2009-09-01 13:48:39 +0200 (Tue, 01 Sep 2009) | 5 lines
Large code refactorisation - the current data pipe is now in __builtin__.cdp.
The result is the removal of 484 calls to generic_fns.pipes.get_pipe() to get the current data pipe.
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r9422 | bugman | 2009-09-01 16:02:48 +0200 (Tue, 01 Sep 2009) | 3 lines
Created the new maths_fns.rotation_matrix.R_to_euler_zyz() function and associated unit test.
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r9423 | bugman | 2009-09-01 16:38:26 +0200 (Tue, 01 Sep 2009) | 3 lines
The frame order minimisation now first checks if the tensor reductions have been specified.
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r9424 | bugman | 2009-09-01 16:40:49 +0200 (Tue, 01 Sep 2009) | 5 lines
Fix for the script() user function.
The function intro flag at the end of executing an external script was not being restored.
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r9425 | bugman | 2009-09-01 16:44:00 +0200 (Tue, 01 Sep 2009) | 3 lines
Added a function intro text for the script() user function.
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r9426 | bugman | 2009-09-02 14:09:02 +0200 (Wed, 02 Sep 2009) | 8 lines
Improvements to the optimisation tests and fixes for bug #14173, bug #14174, bug #14175, bug #14176, bug #14177, bug #14182.
The bugs were reported by Jack Howarth (https://gna.org/users/jhowarth) and Seb
(https://gna.org/users/semor).
The architecture info and optimisation stats for a number of systems have been added to the file for reference.
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r9427 | bugman | 2009-09-02 14:10:30 +0200 (Wed, 02 Sep 2009) | 6 lines
Created a script to test optimisation on various systems.
This just runs the optimisation system tests, collecting and printing the architecture info and
optimisation stats.
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r9428 | bugman | 2009-09-02 15:15:13 +0200 (Wed, 02 Sep 2009) | 3 lines
Added a unit test checking the generic_fns.structure.__all__ list.
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r9429 | bugman | 2009-09-02 15:21:46 +0200 (Wed, 02 Sep 2009) | 3 lines
Tidying up of the docstrings and printouts of the Test___init__ test class.
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r9430 | bugman | 2009-09-02 15:37:30 +0200 (Wed, 02 Sep 2009) | 3 lines
Shifted the test___all__() method into the PackageTestCase base class.
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r9431 | bugman | 2009-09-02 15:43:16 +0200 (Wed, 02 Sep 2009) | 3 lines
Added many more checks for the package __all__ lists.
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r9432 | bugman | 2009-09-02 15:48:17 +0200 (Wed, 02 Sep 2009) | 3 lines
Added a check for the __all__ list of the data package.
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r9433 | bugman | 2009-09-02 19:53:15 +0200 (Wed, 02 Sep 2009) | 3 lines
Comment fixes.
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r9434 | bugman | 2009-09-02 20:15:21 +0200 (Wed, 02 Sep 2009) | 3 lines
Updated the package __all__ lists.
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r9435 | bugman | 2009-09-02 20:24:47 +0200 (Wed, 02 Sep 2009) | 3 lines
Added a check for non-existent modules, and updated the __all__ lists.
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r9436 | bugman | 2009-09-02 22:11:08 +0200 (Wed, 02 Sep 2009) | 7 lines
Made the profile module optional, removing the dependency on the Python development packages.
This was in response to Tiago Pais's <tpais att itqb dot unl dot pt> message at
https://mail.gna.org/public/relax-users/2009-08/msg00040.html (Message-id:
<A3A9E765436240CDA75B3045C405BED6@...>).
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r9437 | bugman | 2009-09-03 13:42:16 +0200 (Thu, 03 Sep 2009) | 11 lines
The whitespace after commas has been enforced (for Python 3.x).
This was done with the python 2.x to 3.x script with the command:
2to3 -w -f ws_comma relax .
The change is in preparation for Python 3.0, and relax still works with Python versions 2.4, 2.5,
and 2.6. All commas now have whitespace after them.
The docs/2to3_checklist file has also been updated with all the 2to3 changes.
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r9438 | bugman | 2009-09-03 13:52:25 +0200 (Thu, 03 Sep 2009) | 3 lines
Removed some debugging code.
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r9439 | bugman | 2009-09-03 14:06:49 +0200 (Thu, 03 Sep 2009) | 9 lines
Some more print statement updates for Python 3.x.
This was down with the python 2.x to 3.x script with the commands:
2to3 -w -f print relax .
The change is in preparation for Python 3.0, and relax still works with Python versions 2.4, 2.5,
and 2.6.
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