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SVN archive Commit Log


Commit Date  
[r8489] by bugman

The "'" character is stripped so __det_pdb_element() better handles RNA.

2009-01-15 17:47:49 Tree
[r8488] by bugman

Added 'SG' to the translation table.

2009-01-15 17:46:43 Tree
[r8487] by bugman

Shifted __det_pdb_element() to the correct location.

2009-01-15 17:42:02 Tree
[r8486] by bugman

Added an amino acid translation table for determining elements from PDB atom names.

2009-01-15 17:41:28 Tree
[r8485] by bugman

The internal PDB reader now has rudimentary support for element determination if that column is missing.

2009-01-15 17:30:08 Tree
[r8484] by bugman

Bug fixes for the non-protein and non-RNA Scientific python molecules.

A new MolContainer list-type class has been added to store the molecules.

2009-01-15 17:03:36 Tree
[r8483] by bugman

Bug fix for the load_pdb() method.

Molecules other than proteins and RNA are now correctly stored and their type set in mol_type.

2009-01-15 16:37:00 Tree
[r8482] by bugman

Bug fix for the test_load_spins_from_small_molecule() system test.

The molecule name is now 'gromacs_phthalic_acid_mol1'.

2009-01-15 16:19:30 Tree
[r8481] by bugman

The write_pdb() method now validates the structural data with validate() before doing anything.

2009-01-15 16:17:55 Tree
[r8480] by bugman

Bug fix for the new validate() method.

2009-01-15 16:15:59 Tree
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