relax SVN archive

Fixes for all the test_calc_unit_vectorsx() system tests.

Merged revisions 8356,8436,8470-8471 via svnmerge from
svn+ssh://bugman@.../svn/relax/1.3

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r8356 | semor | 2009-01-10 02:28:29 +0100 (Sat, 10 Jan 2009) | 3 lines

Corrected a typo found while coding in the 'relax_disp' branch.
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r8436 | semor | 2009-01-13 20:23:13 +0100 (Tue, 13 Jan 2009) | 7 lines

Corrected a typo.

This was discussed in a thread starting at:
https://mail.gna.org/public/relax-devel/2009-01/msg00087.html
(Message-id: <496CD419.9020908@...>)
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r8470 | bugman | 2009-01-15 13:52:12 +0100 (Thu, 15 Jan 2009) | 6 lines

Modified parse_token() to allow for '-' characters in molecule names (derived from file names, etc.)

Instead of throwing a RelaxError if an invalid range is found, it is assumed that the '-' character
does not signify a range and is treated as a string character which is part of the token.
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r8471 | bugman | 2009-01-15 14:01:40 +0100 (Thu, 15 Jan 2009) | 6 lines

Deletion of the test_parse_token_range_failx() unit test.

parse_token() no longer raises RelaxErrors with invalid range tokens (as they are assumed to be
standard string characters instead).
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Started to put equations and references in the user function docstrings.

Also corrected a small typo.

This was proposed by Ed in a post at:
https://mail.gna.org/public/relax-devel/2009-01/msg00028.html
(Message-id: <7f080ed10901080137i35d21213of5884edb7da59d00@...>)

Started to implement a function for reading 'R2eff' values directly.

This is as proposed in a post at:
https://mail.gna.org/public/relax-devel/2009-01/msg00020.html
(Message-id: <7f080ed10901070529s397f7f23p914c820ced4d07f@...>)

The function does not contain code yet.

Deletion of the test_parse_token_range_failx() unit test.

parse_token() no longer raises RelaxErrors with invalid range tokens (as they are assumed to be
standard string characters instead).

Modified parse_token() to allow for '-' characters in molecule names (derived from file names, etc.)

Instead of throwing a RelaxError if an invalid range is found, it is assumed that the '-' character
does not signify a range and is treated as a string character which is part of the token.

Fix for the test___residue_loop_selection() unit test.

The molecule name is now different!

Redesign of the set up of the molecule container data structures.

The file info is now set by the pack_structs() base API method rather than the MolContainer internal
object or the ScientificPython code.

Fix for the 2 test_load_pdb() unit tests. The mol name is in the mol_name variable.

Reverted r8458. The molecule name is only used as a check, it is stored by other parts of the code!

The command used was:
svn merge -r8458:8457 .