relax SVN archive

Fix for bug #12607 (https://gna.org/bugs/?12607).

This bug was reported by Chris Brosey (chris dot a dot brosey att vanderbilt dot edu).

The problem was that the fixed flag was being checked for all spins. However deselected spins
should be ignored.

Added a catch for bug #12607 (https://gna.org/bugs/?12607) to the bugs_12582_12591.py script.

This bug was reported by Chris Brosey (chris dot a dot brosey att vanderbilt dot edu).

Another fix for the test_read_sparky() system test.

This fixes the checking of the new spin specific 'intensities' data structure.

Modified the script to create the basic_heights_T2_ncyc1.bz2 saved state and regenerated this file.

The spectrum.read_intensities() user function is now used, and the new format of the spin specific
'intensities' data structure is in the saved state.

Fix for the test_read_sparky() system test.

The relax_fit.read() call was replaced with spectrum.read_intensities().

Changed the warning message once more.

Cleaned up a warning string.

Changed the default integration method from None to 'height'.

Height integration, when done properly is better than volumes for peak intensities ;)

Merged revisions 7969-7983 via svnmerge from
svn+ssh://bugman@.../svn/relax/1.3

........
r7971 | bugman | 2008-11-10 23:17:17 +0100 (Mon, 10 Nov 2008) | 6 lines

Added a missing RelaxError import.

This was discovered when trying to replicate bug #12582 (https://gna.org/bugs/index.php?12582)
reported by Chris Brosey (chris dot a dot brosey att vanderbilt dot edu).
........
r7972 | bugman | 2008-11-10 23:31:18 +0100 (Mon, 10 Nov 2008) | 3 lines

Added a system test for replicating bug #12582.
........
r7973 | bugman | 2008-11-10 23:36:36 +0100 (Mon, 10 Nov 2008) | 9 lines

Fix for bug #12582 (https://gna.org/bugs/index.php?12582).

This was reported by Chris Brosey (chris dot a dot brosey att vanderbilt dot edu).

The problem was that the frq_labels data structure in the SpinContainer was sometimes set to []
rather than the data structure being missing. Now the structure is being tested if it is either
None or [] before being accessed in the model-free return_units() method.
........
r7975 | bugman | 2008-11-12 15:57:25 +0100 (Wed, 12 Nov 2008) | 3 lines

Converted some ints to bools.
........
r7976 | bugman | 2008-11-12 20:57:14 +0100 (Wed, 12 Nov 2008) | 3 lines

Modified the system test to additionally catch bug #12591 (https://gna.org/bugs/index.php?12591).
........
r7977 | bugman | 2008-11-12 20:59:05 +0100 (Wed, 12 Nov 2008) | 3 lines

Renamed the system test script.
........
r7978 | bugman | 2008-11-12 20:59:27 +0100 (Wed, 12 Nov 2008) | 3 lines

Deleted the old system test script.
........
r7979 | bugman | 2008-11-12 21:00:37 +0100 (Wed, 12 Nov 2008) | 3 lines

Fixes for the system test script rename of the previous commits.
........
r7980 | bugman | 2008-11-12 21:18:03 +0100 (Wed, 12 Nov 2008) | 9 lines

Partial fix for bug #12591 (https://gna.org/bugs/index.php?12591).

This was reported by Chris Brosey (chris dot a dot brosey att vanderbilt dot edu).

If no model is ever selected in the model_selection.select() function, then relax no longer fails.
The failure is however caused by another problem elsewhere within relax, so this fix is not
complete.
........
r7981 | bugman | 2008-11-12 21:21:39 +0100 (Wed, 12 Nov 2008) | 9 lines

Final fix for bug #12591 (https://gna.org/bugs/index.php?12591).

This bug was reported by Chris Brosey (chris dot a dot brosey att vanderbilt dot edu).

The problem was that the global_index counter in the model-free model_loop() method was supposed to
be incremented at the start of the loop. The deselected spin skipping code was located before this
though, causing the counter to not be incremented!
........
r7982 | bugman | 2008-11-12 21:35:26 +0100 (Wed, 12 Nov 2008) | 5 lines

Created a very simple system test to catch bug #12588 (https://gna.org/bugs/index.php?12588).

This bug was reported by Tyler Reddy (treddy at dal dot ca).
........
r7983 | bugman | 2008-11-12 21:49:03 +0100 (Wed, 12 Nov 2008) | 8 lines

Fix for bug #12588 (https://gna.org/bugs/index.php?12588).

This bug was reported by Tyler Reddy (treddy at dal dot ca).

The problem was that the results.read() user function was not handling the directory name being part
of the file name argument. This can now be handled.
........

Fix for bug #12588 (https://gna.org/bugs/index.php?12588).

This bug was reported by Tyler Reddy (treddy at dal dot ca).

The problem was that the results.read() user function was not handling the directory name being part
of the file name argument. This can now be handled.