relax SVN archive

Fixed the args and docstring for the generic_fns.spectrum.read() function.

Updated the relax_fit.py sample script to match the changes of r7954 to the system test script.

The script now uses the new spectrum user function class.

Expanded the relax_fit.py system test script to include the creation of a number of files.

These include files of Rx values, the results file, grace files, and the saved state file.

Updated the relax_fit.py system test script for the new spectrum user function class.

Fix for the initial spectrum.read_intensities() print out, the int_method arg was not being shown.

Fix for bug #12487 (https://gna.org/bugs/index.php?12487).

This bug was reported by Tyler Reddy (TREDDY at dal dot ca).

The problem was that missing XH bond vector data was being manifested as the spin.xh_vect object
being set to None. The overfit_deselect() function which is responsible for deselecting unsuitable
spins prior to optimisation was only checking if the object existed, not if it was None!

Created a new noe user function class, unrelated to the previously deleted one.

This contains the single user function, noe.spectrum_type().

Added module docstrings and __docformat__ variables to the 'spectrum' prompt module.

Merged revisions 7937-7940,7942-7948 via svnmerge from
svn+ssh://bugman@.../svn/relax/1.3

........
r7937 | bugman | 2008-10-22 22:25:33 +0200 (Wed, 22 Oct 2008) | 3 lines

Epydoc doctring indentation fixes.
........
r7938 | bugman | 2008-10-22 22:47:56 +0200 (Wed, 22 Oct 2008) | 5 lines

Added module docstrings and __docformat__ variables to all of the prompt modules.

The __docformat__ string is set to 'plaintext' to make epydoc happy.
........
r7939 | bugman | 2008-10-22 22:55:51 +0200 (Wed, 22 Oct 2008) | 5 lines

Lots of epydoc fixes.

This is mainly title underline fixes.
........
r7940 | bugman | 2008-10-22 23:20:40 +0200 (Wed, 22 Oct 2008) | 3 lines

Massive epydoc fixes too all of the maths_fns modules!!!
........
r7942 | bugman | 2008-10-23 16:44:53 +0200 (Thu, 23 Oct 2008) | 6 lines

Fix for the relax IO logging with the -l command line argument.

This is a partial fix for bug #12489 (https://gna.org/bugs/?12489). The teeing problem still has
to be fixed.
........
r7943 | bugman | 2008-10-23 16:54:43 +0200 (Thu, 23 Oct 2008) | 3 lines

Converted the tee class method into a module function.
........
r7944 | bugman | 2008-10-23 16:56:12 +0200 (Thu, 23 Oct 2008) | 3 lines

Epydoc'd the tee function docstring.
........
r7945 | bugman | 2008-10-23 16:57:45 +0200 (Thu, 23 Oct 2008) | 3 lines

Docstring improvements for the log() function.
........
r7946 | bugman | 2008-10-23 16:58:04 +0200 (Thu, 23 Oct 2008) | 3 lines

Removed a line of redundant code.
........
r7947 | bugman | 2008-10-23 16:58:56 +0200 (Thu, 23 Oct 2008) | 3 lines

Added the missing import of relax_io.tee.
........
r7948 | bugman | 2008-10-23 17:01:18 +0200 (Thu, 23 Oct 2008) | 5 lines

Final fixes for bug #12489 (https://gna.org/bugs/?12489).

The log() and tee() functions are now operational.
........

Final fixes for bug #12489 (https://gna.org/bugs/?12489).

The log() and tee() functions are now operational.