relax SVN archive

Merged revisions 7739-7790 via svnmerge from
svn+ssh://bugman@.../svn/relax/1.3

........
r7741 | semor | 2008-10-16 04:28:28 +0200 (Thu, 16 Oct 2008) | 9 lines

Corrected a name clash.

This originates from a post by Edward at:
https://mail.gna.org/public/relax-devel/2008-10/msg00060.html (message ID:
7f080ed10810151446p58ab78f1u93cb1bc4afbeb202@...).

I hope this fixes the problem...
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r7742 | semor | 2008-10-16 04:32:10 +0200 (Thu, 16 Oct 2008) | 6 lines

Passed more arguments to the det_dimensions() function and removed 'self.' instances.

The test for the support of a XEasy peak list now passes, although there still may be some bugs
present...
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r7743 | semor | 2008-10-16 05:02:11 +0200 (Thu, 16 Oct 2008) | 10 lines

Added more to the XEasy support test.

Now, the test fails when reaching the first residue with a non HN/N assignment. In fact, the reading
of this residue is fine, but no intensity is extracted... hence the failure of the test.

Now, what do we want to do ? Do we want to support side chain assignments mixed with backbone
assignments ? In other words, do we want to support multiuple assignment types in a single
analysis ?
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r7744 | semor | 2008-10-16 05:47:31 +0200 (Thu, 16 Oct 2008) | 3 lines

Updated some copyrights.
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r7784 | bugman | 2008-10-16 21:22:02 +0200 (Thu, 16 Oct 2008) | 7 lines

Fix for bug #12456 (https://gna.org/bugs/?12456).

When calculating the errors from replicate spectra, the standard deviations of all spins were being
averaged rather than the variance. The same error occurred when averaging across spectra - when not
all are duplicated, triplicated, etc.
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r7787 | semor | 2008-10-16 22:07:30 +0200 (Thu, 16 Oct 2008) | 7 lines

Set the peak intensity as the default for the reading of NMRView peak list.

The volume was being used. Now, the volume can be used with the use of the 'int_col' variable.

Moreover, the docstrings are now more complete for the of NMRView peak lists.
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r7789 | semor | 2008-10-16 22:47:52 +0200 (Thu, 16 Oct 2008) | 3 lines

Corrected the passing of the 'int_col' variable to the intensity extraction functions.
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r7790 | semor | 2008-10-16 23:12:10 +0200 (Thu, 16 Oct 2008) | 7 lines

Corrected an argument.

This was pointed out by Edward in a post at :
https://mail.gna.org/public/relax-devel/2008-10/msg00067.html
(message ID: 7f080ed10810161357h418d386bi4d2dd5851d7a4575@...)
........

Corrected an argument.

This was pointed out by Edward in a post at :
https://mail.gna.org/public/relax-devel/2008-10/msg00067.html
(message ID: 7f080ed10810161357h418d386bi4d2dd5851d7a4575@...)

Corrected the passing of the 'int_col' variable to the intensity extraction functions.

Updated the dependency list for relax 1.3 to include numpy.

This was pointed out by Christophe Farès.

Set the peak intensity as the default for the reading of NMRView peak list.

The volume was being used. Now, the volume can be used with the use of the 'int_col' variable.

Moreover, the docstrings are now more complete for the of NMRView peak lists.

Ported r7784 from the 1.3 line. This is the fix for bug #12456 (https://gna.org/bugs/?12456).

The command used was:
svn merge -r7783:7784 svn+ssh://bugman@.../svn/relax/1.3

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r7784 | bugman | 2008-10-16 21:22:02 +0200 (Thu, 16 Oct 2008) | 7 lines
Changed paths:
M /1.3/prompt/relax_fit.py
M /1.3/specific_fns/relax_fit.py

Fix for bug #12456 (https://gna.org/bugs/?12456).

When calculating the errors from replicate spectra, the standard deviations of all spins were being
averaged rather than the variance. The same error occurred when averaging across spectra - when not
all are duplicated, triplicated, etc.
.....

Removed merge tracking for "svnmerge" for
svn+ssh://bugman@.../svn/relax/1.3

Fix for bug #12456 (https://gna.org/bugs/?12456).

When calculating the errors from replicate spectra, the standard deviations of all spins were being
averaged rather than the variance. The same error occurred when averaging across spectra - when not
all are duplicated, triplicated, etc.

Docstring fix.

Comment fixes.