relax SVN archive

Passed the 'file_data' variable to the det_dimensions() function and removed some 'self.' instances.

The system test for XEasy peak list support now goes further... However, more work is still needed.

Manually ported r3254 from the multi_processor branch.

The command used was:
svn merge -r3253:3254 svn+ssh://bugman@.../svn/relax/branches/multi_processor .

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r3254 | varioustoxins | 2007-03-30 11:26:11 +0200 (Fri, 30 Mar 2007) | 2 lines
Changed paths:
M /branches/multi_processor/multi/commands.py
M /branches/multi_processor/multi/uni_processor.py

corrections to keyword passing to dict.update()
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Manually ported r3253 from the multi_processor branch.

The command used was:
svn merge -r3252:3253 svn+ssh://bugman@.../svn/relax/branches/multi_processor .

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r3253 | varioustoxins | 2007-03-30 10:58:03 +0200 (Fri, 30 Mar 2007) | 2 lines
Changed paths:
M /branches/multi_processor/multi/mpi4py_processor.py
M /branches/multi_processor/multi/processor.py
M /branches/multi_processor/multi/uni_processor.py
M /branches/multi_processor/relax

'classification' of Processor classes
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Manually ported r3252 from the multi_processor branch.

The command used was:
svn merge -r3251:3252 svn+ssh://bugman@.../svn/relax/branches/multi_processor .

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r3252 | varioustoxins | 2007-03-30 09:57:54 +0200 (Fri, 30 Mar 2007) | 2 lines
Changed paths:
M /branches/multi_processor/multi/commands.py
M /branches/multi_processor/multi/mpi4py_processor.py
M /branches/multi_processor/multi/processor.py
M /branches/multi_processor/multi/uni_processor.py

applied GPL v2 licenses
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Manually ported r3251 from the multi_processor branch.

The 2 commands used were:
svn merge -r3250:3251 svn+ssh://bugman@.../svn/relax/branches/multi_processor .
svn merge -r3250:3251 svn+ssh://bugman@.../svn/relax/branches/multi_processor/specific_fns/model_free.py specific_fns/model_free/mf_minimise.py

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r3251 | varioustoxins | 2007-03-30 09:53:32 +0200 (Fri, 30 Mar 2007) | 2 lines
Changed paths:
M /branches/multi_processor/multi/commands.py
M /branches/multi_processor/multi/mpi4py_processor.py
M /branches/multi_processor/specific_fns/model_free.py

MF class name fixes also now works on python 2.3.3
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Manually ported r3250 from the multi_processor branch.

The command used was:
svn merge -r3249:3250 svn+ssh://bugman@.../svn/relax/branches/multi_processor .

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r3250 | varioustoxins | 2007-03-30 09:32:44 +0200 (Fri, 30 Mar 2007) | 3 lines
Changed paths:
M /branches/multi_processor/multi/commands.py
M /branches/multi_processor/multi/mpi4py_processor.py
M /branches/multi_processor/multi/processor.py

Minor name changes on MF memo slave and result commands
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Manually ported r3249 from the multi_processor branch.

The 2 commands used were:
svn merge -r3248:3249 svn+ssh://bugman@.../svn/relax/branches/multi_processor .
svn merge -r3248:3249 svn+ssh://bugman@.../svn/relax/branches/multi_processor/specific_fns/model_free.py specific_fns/model_free/mf_minimise.py

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r3249 | varioustoxins | 2007-03-30 09:00:39 +0200 (Fri, 30 Mar 2007) | 4 lines
Changed paths:
M /branches/multi_processor/multi/commands.py
M /branches/multi_processor/multi/mpi4py_processor.py
M /branches/multi_processor/multi/uni_processor.py
M /branches/multi_processor/specific_fns/model_free.py

more work to remove specious calls to module mpi4py when starting
uniprocessor version feedback prints correctly
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Manually ported r3248 from the multi_processor branch.

The 2 commands used were:
svn merge -r3247:3248 svn+ssh://bugman@.../svn/relax/branches/multi_processor .
svn merge -r3247:3248 svn+ssh://bugman@.../svn/relax/branches/multi_processor/specific_fns/model_free.py specific_fns/model_free/mf_minimise.py

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r3248 | varioustoxins | 2007-03-29 21:47:17 +0200 (Thu, 29 Mar 2007) | 4 lines
Changed paths:
A /branches/multi_processor/multi/commands.py
M /branches/multi_processor/multi/mpi4py_processor.py
M /branches/multi_processor/multi/processor.py
M /branches/multi_processor/specific_fns/model_free.py

more modifications to remove accidental dependances on mpi4py in uni_processor
creation of command module
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Manually ported r3246 from the multi_processor branch.

The command used was:
svn merge -r3245:3246 svn+ssh://bugman@.../svn/relax/branches/multi_processor .

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r3246 | varioustoxins | 2007-03-29 19:43:49 +0200 (Thu, 29 Mar 2007) | 3 lines
Changed paths:
M /branches/multi_processor/multi/mpi4py_processor.py
A /branches/multi_processor/multi/processor.py
M /branches/multi_processor/multi/uni_processor.py

corrections to remove unexpected calls of from mpi4py import MPI in
mpi4py_processor from uniprocessor leading to an unexpected requirement of mpi4py
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Manually ported r3243 from the multi_processor branch.

The 2 commands used were:
svn merge -r3242:3243 svn+ssh://bugman@.../svn/relax/branches/multi_processor .
svn merge -r3242:3243 svn+ssh://bugman@.../svn/relax/branches/multi_processor/specific_fns/model_free.py specific_fns/model_free/mf_minimise.py

This code is becoming horribly broken. This can't be fixed yet as it will make porting impossible!

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r3243 | varioustoxins | 2007-03-29 11:45:22 +0200 (Thu, 29 Mar 2007) | 4 lines
Changed paths:
M /branches/multi_processor/multi/mpi4py_processor.py
M /branches/multi_processor/multi/uni_processor.py
M /branches/multi_processor/prompt/interpreter.py
M /branches/multi_processor/relax
M /branches/multi_processor/specific_fns/model_free.py

First fully working multi branch with both uniprocessor and mpi4py support
communication overhead for 18 residues (test_short.py from chris) with
in memory io ~25%
.....