relax SVN archive

Manually ported r3251 from the multi_processor branch.

The 2 commands used were:
svn merge -r3250:3251 svn+ssh://bugman@.../svn/relax/branches/multi_processor .
svn merge -r3250:3251 svn+ssh://bugman@.../svn/relax/branches/multi_processor/specific_fns/model_free.py specific_fns/model_free/mf_minimise.py

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r3251 | varioustoxins | 2007-03-30 09:53:32 +0200 (Fri, 30 Mar 2007) | 2 lines
Changed paths:
M /branches/multi_processor/multi/commands.py
M /branches/multi_processor/multi/mpi4py_processor.py
M /branches/multi_processor/specific_fns/model_free.py

MF class name fixes also now works on python 2.3.3
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Manually ported r3250 from the multi_processor branch.

The command used was:
svn merge -r3249:3250 svn+ssh://bugman@.../svn/relax/branches/multi_processor .

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r3250 | varioustoxins | 2007-03-30 09:32:44 +0200 (Fri, 30 Mar 2007) | 3 lines
Changed paths:
M /branches/multi_processor/multi/commands.py
M /branches/multi_processor/multi/mpi4py_processor.py
M /branches/multi_processor/multi/processor.py

Minor name changes on MF memo slave and result commands
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Manually ported r3249 from the multi_processor branch.

The 2 commands used were:
svn merge -r3248:3249 svn+ssh://bugman@.../svn/relax/branches/multi_processor .
svn merge -r3248:3249 svn+ssh://bugman@.../svn/relax/branches/multi_processor/specific_fns/model_free.py specific_fns/model_free/mf_minimise.py

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r3249 | varioustoxins | 2007-03-30 09:00:39 +0200 (Fri, 30 Mar 2007) | 4 lines
Changed paths:
M /branches/multi_processor/multi/commands.py
M /branches/multi_processor/multi/mpi4py_processor.py
M /branches/multi_processor/multi/uni_processor.py
M /branches/multi_processor/specific_fns/model_free.py

more work to remove specious calls to module mpi4py when starting
uniprocessor version feedback prints correctly
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Manually ported r3248 from the multi_processor branch.

The 2 commands used were:
svn merge -r3247:3248 svn+ssh://bugman@.../svn/relax/branches/multi_processor .
svn merge -r3247:3248 svn+ssh://bugman@.../svn/relax/branches/multi_processor/specific_fns/model_free.py specific_fns/model_free/mf_minimise.py

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r3248 | varioustoxins | 2007-03-29 21:47:17 +0200 (Thu, 29 Mar 2007) | 4 lines
Changed paths:
A /branches/multi_processor/multi/commands.py
M /branches/multi_processor/multi/mpi4py_processor.py
M /branches/multi_processor/multi/processor.py
M /branches/multi_processor/specific_fns/model_free.py

more modifications to remove accidental dependances on mpi4py in uni_processor
creation of command module
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Manually ported r3246 from the multi_processor branch.

The command used was:
svn merge -r3245:3246 svn+ssh://bugman@.../svn/relax/branches/multi_processor .

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r3246 | varioustoxins | 2007-03-29 19:43:49 +0200 (Thu, 29 Mar 2007) | 3 lines
Changed paths:
M /branches/multi_processor/multi/mpi4py_processor.py
A /branches/multi_processor/multi/processor.py
M /branches/multi_processor/multi/uni_processor.py

corrections to remove unexpected calls of from mpi4py import MPI in
mpi4py_processor from uniprocessor leading to an unexpected requirement of mpi4py
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Manually ported r3243 from the multi_processor branch.

The 2 commands used were:
svn merge -r3242:3243 svn+ssh://bugman@.../svn/relax/branches/multi_processor .
svn merge -r3242:3243 svn+ssh://bugman@.../svn/relax/branches/multi_processor/specific_fns/model_free.py specific_fns/model_free/mf_minimise.py

This code is becoming horribly broken. This can't be fixed yet as it will make porting impossible!

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r3243 | varioustoxins | 2007-03-29 11:45:22 +0200 (Thu, 29 Mar 2007) | 4 lines
Changed paths:
M /branches/multi_processor/multi/mpi4py_processor.py
M /branches/multi_processor/multi/uni_processor.py
M /branches/multi_processor/prompt/interpreter.py
M /branches/multi_processor/relax
M /branches/multi_processor/specific_fns/model_free.py

First fully working multi branch with both uniprocessor and mpi4py support
communication overhead for 18 residues (test_short.py from chris) with
in memory io ~25%
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Manually ported r3242 from the multi_processor branch.

The command used was:
svn merge -r3241:3242 svn+ssh://bugman@.../svn/relax/branches/multi_processor/specific_fns/model_free.py specific_fns/model_free/mf_minimise.py

This was a bugger!

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r3242 | varioustoxins | 2007-03-27 17:04:02 +0200 (Tue, 27 Mar 2007) | 3 lines
Changed paths:
M /branches/multi_processor/specific_fns/model_free.py

changes to add minimise command processing for multiprocessing
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Partially ported r3241 from the multi_processor branch.

The command used was:
svn merge -r3240:3241 svn+ssh://bugman@.../svn/relax/branches/multi_processor .

The changes to maths_fns/mf.py didn't need to be ported across.

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r3241 | varioustoxins | 2007-03-27 15:35:16 +0200 (Tue, 27 Mar 2007) | 2 lines
Changed paths:
M /branches/multi_processor/maths_fns/mf.py
M /branches/multi_processor/multi/mpi4py_processor.py

installation of simplistic remote minimisation command
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Manually ported r3239 from the multi_processor branch.

The command used was:
svn merge -r3238:3239 svn+ssh://bugman@.../svn/relax/branches/multi_processor .

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r3239 | varioustoxins | 2007-03-22 09:20:55 +0100 (Thu, 22 Mar 2007) | 3 lines
Changed paths:
M /branches/multi_processor/multi/mpi4py_processor.py
M /branches/multi_processor/relax

multi processor fixes for proper command queing with optional
load balancing iexception support and segmented results
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Manually ported r3238 from the multi_processor branch.

The command used was:
svn merge -r3237:3238 svn+ssh://bugman@.../svn/relax/branches/multi_processor .

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r3238 | varioustoxins | 2007-03-19 23:23:33 +0100 (Mon, 19 Mar 2007) | 3 lines
Changed paths:
M /branches/multi_processor/multi/mpi4py_processor.py
M /branches/multi_processor/relax

updates to create a better inter process command passing mechanism
and initiate relax in what might possibly be a sane state!
.....