relax SVN archive

Shifted the prompt documentation from docstrings into global variables.

Epydoc fixes for the module docstring.

Epydoc fixes for the docstrings appended to molmol.write() and pymol.write().

The text appended to the user functions have been shifted to the global variables
__molmol_colours_prompt_doc__ and __x11_colours_prompt_doc__. Proper docstrings have been added to
the functions of the colour module.

Converted the linear_gradient() docstring to epytxt format and added a module docstring.

Removed the sconstruct file from the API manual.

Fix for the 'select_sim' list setting methods.

The copy.deepcopy() function is now used to set 'select_sim' so that the lists from different spins
are no longer actually exactly the same list.

Docstring fix for setup().

Modified the test_omp_analysis() system test to add more MC sim failures.

This adds a second failure to the second residue.

Fix for the loading of a version 1.2 model-free results file.

The 'select_sim' array was not being set as a list of booleans but rather an numpy array of bools.

Converted the 'select_sim' variable to a list of bools.