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[r7513] by bugman

Added a fix for the aliasing of a PDB file for when no structural data exists in the data pipe.

This is related to bug #12409 (https://gna.org/bugs/index.php?12409), so that rather than an
unrelated RelaxError, the structure is not aliased is the structural data could not be loaded in
another data pipe.

2008-10-05 12:37:31 Tree
[r7512] by bugman

Fix for the checks in the test_load_scientific_results() system test.

2008-10-05 11:45:13 Tree
[r7511] by bugman

Partial fix for bug #12409 (https://gna.org/bugs/index.php?12409).

Updated the add_struct() method to match that of the internal structural object.

2008-10-05 11:30:09 Tree
[r7510] by bugman

Created the new test_load_scientific_results() system test.

This test checks the loading of a PDB file using the Scientific python PDB internal object when
reading a results file. The test_load_results() system test has been renamed to
test_load_internal_results().

2008-10-05 11:04:19 Tree
[r7509] by bugman

Made the structure reading from a results file system test specific to the internal structure object.

2008-10-05 10:55:16 Tree
[r7508] by bugman

Partial fix for bug #12407 (https://gna.org/bugs/index.php?12407).

This catches the "TypeError: unsupported operand type(s) for *: 'float' and 'NoneType'" error. If
the local or global tm is missing for some reason, the eliminate function returns False indicating
that the model has not been eliminated.

2008-10-05 10:40:53 Tree
[r7507] by bugman

Fix for the test_tm_51ns() system test.

The model 'tm4' is set rather than 'm4'.

2008-10-05 10:19:51 Tree
[r7506] by bugman

Conversion to bools in determine_model_type() and a fix for bug #12408 (https://gna.org/bugs/?12408).

All internal flags in the method have been converted to Booleans. This commit also contains a bit
of a fix for bug #12408. The bug was a false alarm and now determine_model_type() raises a more
relevant RelaxError.

2008-10-05 10:17:27 Tree
[r7505] by bugman

Created a system test for model-free model elimination when local tm > 50 ns.

2008-10-05 10:03:59 Tree
[r7504] by bugman

Completed the fix for bug #12407 (https://gna.org/bugs/index.php?12407).

This latest problem was caused by the use of the wrong Boolean operator in the model-free
eliminate() method. The method has also been converted to return the Booleans True or False.

2008-10-05 09:42:12 Tree
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