svn+ssh://bugman@.../svn/relax/branches/pipe_refs
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r7443 | bugman | 2008-09-29 23:16:31 +0200 (Mon, 29 Sep 2008) | 3 lines
Renamed the current() function to cdp_name() and created cdp() for returning the current data pipe.
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r7444 | bugman | 2008-09-29 23:20:20 +0200 (Mon, 29 Sep 2008) | 3 lines
Renamed cdp() to get_pipe() and allowed it to return any desired data pipe.
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r7445 | bugman | 2008-09-29 23:27:47 +0200 (Mon, 29 Sep 2008) | 3 lines
Removed all references to 'ds.current_pipe' by using the generic_fns.pipes API.
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r7446 | bugman | 2008-09-29 23:56:26 +0200 (Mon, 29 Sep 2008) | 3 lines
Replaced all refs to 'cdp = ds[ds.current_pipe]' with 'cdp = pipes.get_pipe()'.
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r7447 | bugman | 2008-09-30 00:08:01 +0200 (Tue, 30 Sep 2008) | 3 lines
Bug fix for the renamed current() to get_pipe() function.
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r7448 | bugman | 2008-09-30 00:08:40 +0200 (Tue, 30 Sep 2008) | 3 lines
Bug fix for the renaming of current() to cdp_name().
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r7449 | bugman | 2008-09-30 00:09:23 +0200 (Tue, 30 Sep 2008) | 3 lines
Created the new function get_type() for returning the type of the data pipe.
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r7450 | bugman | 2008-09-30 00:44:27 +0200 (Tue, 30 Sep 2008) | 3 lines
Eliminated all mentions of 'ds[ds.current_pipe]' by using the generic_fns.pipes API.
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r7451 | bugman | 2008-09-30 01:14:36 +0200 (Tue, 30 Sep 2008) | 3 lines
Eliminated all access to 'ds.current_pipe' by using the API of generic_fns.pipes.
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r7452 | bugman | 2008-09-30 16:32:09 +0200 (Tue, 30 Sep 2008) | 3 lines
Removed all references to ds[key] by using the API of generic_fns.pipes.
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r7453 | bugman | 2008-09-30 16:35:07 +0200 (Tue, 30 Sep 2008) | 3 lines
Removed some unused imports of RelaxNoPipeError.
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r7454 | bugman | 2008-09-30 16:37:24 +0200 (Tue, 30 Sep 2008) | 3 lines
Removed a pile of unused and significantly out of date functions.
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r7455 | bugman | 2008-09-30 16:44:59 +0200 (Tue, 30 Sep 2008) | 3 lines
Removed unused RelaxNoPipeError imports and some old code.
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r7456 | bugman | 2008-09-30 17:02:13 +0200 (Tue, 30 Sep 2008) | 3 lines
Removed all unused imports of the relax data store.
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r7457 | bugman | 2008-09-30 17:06:21 +0200 (Tue, 30 Sep 2008) | 6 lines
Removed the columnar formatted results writing code.
This is no longer necessary because of the universal XML results file. Found by searching for
usage of the relax data store.
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r7458 | bugman | 2008-09-30 17:16:15 +0200 (Tue, 30 Sep 2008) | 5 lines
Converted the relax_curve_diff.py sample script to the new design.
This was identified by the unnecessary import of the relax data storage object.
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r7459 | bugman | 2008-09-30 17:17:52 +0200 (Tue, 30 Sep 2008) | 3 lines
Documentation fix in the sample script.
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r7460 | bugman | 2008-09-30 17:36:29 +0200 (Tue, 30 Sep 2008) | 5 lines
Updated the latex_mf_table.py sample script to the new design.
The problems were identified with the import of the relax data storage object.
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r7461 | bugman | 2008-09-30 17:40:37 +0200 (Tue, 30 Sep 2008) | 3 lines
Created the has_pipe() function for the pipes API.
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r7462 | bugman | 2008-09-30 17:41:41 +0200 (Tue, 30 Sep 2008) | 3 lines
Removed the dependence on the relax data store by using the pipes API.
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r7463 | bugman | 2008-09-30 17:53:55 +0200 (Tue, 30 Sep 2008) | 3 lines
Shifted the reset() functional code to generic_fns.
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r7464 | bugman | 2008-09-30 18:01:09 +0200 (Tue, 30 Sep 2008) | 3 lines
Converted the back_calc() function to the new relax design.
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r7465 | bugman | 2008-09-30 18:05:11 +0200 (Tue, 30 Sep 2008) | 3 lines
Created the pipes API function pipe_names() to get the list of all data pipes.
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r7466 | bugman | 2008-09-30 18:09:42 +0200 (Tue, 30 Sep 2008) | 3 lines
Removed the dependence on the relax data store.
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r7467 | bugman | 2008-09-30 18:16:24 +0200 (Tue, 30 Sep 2008) | 7 lines
Bug fix for the __set_diff_tensor() method for reading the tensor from a relax 1.2 results file.
This was uncovered by searching for the relax data store. This store rather than the current data
pipe was being accessed. The additional large bug found is that the diffusion tensor was referred
to as 'diff' rather than 'diff_tensor'.
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r7468 | bugman | 2008-09-30 18:17:30 +0200 (Tue, 30 Sep 2008) | 3 lines
Removed the results writing methods. This is now done by the universal XML results file code.
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r7469 | bugman | 2008-09-30 18:18:00 +0200 (Tue, 30 Sep 2008) | 3 lines
Removed the unused relax data store.
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r7470 | bugman | 2008-09-30 18:21:25 +0200 (Tue, 30 Sep 2008) | 3 lines
Alphabetical ordering of the methods.
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r7471 | bugman | 2008-10-01 13:39:36 +0200 (Wed, 01 Oct 2008) | 5 lines
Converted the create_vector_dist() function to the new design.
Again the problem was identified by looking at incorrect usage of the relax data store.
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r7472 | bugman | 2008-10-01 13:40:17 +0200 (Wed, 01 Oct 2008) | 3 lines
Removed a reference to 'run' in a comment.
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r7473 | bugman | 2008-10-01 13:40:36 +0200 (Wed, 01 Oct 2008) | 3 lines
Removed the unused import of the relax data store.
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r7474 | bugman | 2008-10-01 13:44:12 +0200 (Wed, 01 Oct 2008) | 3 lines
Created a new pipes API function, the pipe_loop().
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r7475 | bugman | 2008-10-01 13:46:39 +0200 (Wed, 01 Oct 2008) | 3 lines
The structure objects now use the pipe_loop() in their load_pdb() methods.
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r7476 | bugman | 2008-10-01 13:49:13 +0200 (Wed, 01 Oct 2008) | 3 lines
Updated the delete() method to the new design.
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r7477 | bugman | 2008-10-01 13:53:28 +0200 (Wed, 01 Oct 2008) | 3 lines
Added the switch flag to pipes.create() so that the new pipe doesn't have to be switched to.
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r7478 | bugman | 2008-10-01 14:05:12 +0200 (Wed, 01 Oct 2008) | 3 lines
Clean up of duplicate_data().
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r7479 | bugman | 2008-10-01 14:06:45 +0200 (Wed, 01 Oct 2008) | 5 lines
Converted the eliminate() method to the new design.
Again identified by bad usage of the relax data store.
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r7480 | bugman | 2008-10-01 14:07:54 +0200 (Wed, 01 Oct 2008) | 3 lines
Fix for model_setup(), again bad usage of the relax data store.
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r7481 | bugman | 2008-10-01 14:17:50 +0200 (Wed, 01 Oct 2008) | 3 lines
Converted the deselect() method to the new design.
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r7482 | bugman | 2008-10-01 14:18:08 +0200 (Wed, 01 Oct 2008) | 3 lines
Removed the unused relax data store import.
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r7483 | bugman | 2008-10-01 14:18:37 +0200 (Wed, 01 Oct 2008) | 3 lines
Switched the eliminate function to use the new model_loop().
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r7484 | bugman | 2008-10-01 14:20:48 +0200 (Wed, 01 Oct 2008) | 3 lines
Missing colon starting a loop.
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r7485 | bugman | 2008-10-01 14:26:20 +0200 (Wed, 01 Oct 2008) | 3 lines
Modified the pipe_loop() generator to return the name of the pipe, if asked for.
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r7486 | bugman | 2008-10-01 15:52:50 +0200 (Wed, 01 Oct 2008) | 3 lines
Fixed a circular import issue.
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r7487 | bugman | 2008-10-01 16:00:43 +0200 (Wed, 01 Oct 2008) | 3 lines
Fixes for the calls to the pipes functions.
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r7488 | bugman | 2008-10-01 18:36:54 +0200 (Wed, 01 Oct 2008) | 3 lines
Bug fix for the add_struct() method. The input structure container was being overwritten.
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r7489 | bugman | 2008-10-02 13:30:04 +0200 (Thu, 02 Oct 2008) | 3 lines
Variable name clash bug fix in load_pdb().
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r7490 | bugman | 2008-10-02 13:37:14 +0200 (Thu, 02 Oct 2008) | 3 lines
Put back the condition to skip the current data pipe in searching for pre-loaded data in load_pdb().
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r7491 | bugman | 2008-10-02 13:42:27 +0200 (Thu, 02 Oct 2008) | 3 lines
Bug fix introduced in r7490, '==' should have been used rather than '='.
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r7492 | bugman | 2008-10-02 13:45:17 +0200 (Thu, 02 Oct 2008) | 5 lines
Bug fix for the eliminate() function.
'i' is now called 'model_info' because of the switch to model_loop().
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