Removed some debugging print statements.
Fixed the generation of the diffusion in a cone geometric object.
Fixed the cone_edge() function.
Fixed the call to and the execution of the stitch_cap_to_cone() function.
Fixed calls to the atom_connect() structural API method.
Atom number fixes for the cone_edge() function.
First try at fixing the generate_vector_dist() function.
Removed some useless code in generate_vector_residues().
Removed some debugging code.
Fixes for the cone_edge() function for the structural API changes.