relax SVN archive

Added 2 new methods to the internal relax structural object.

These are __find_bonded_atom() and bond_vectors().

Changed calls to write_pdb_file() to its actual name: write_pdb().

Corrections for the atom_connect() function calls to match the needed variables.

Correction for the structure.atom_add() function calls to match the variables needed.

Switched from os.devnull to devnull within relax_io.open_write_file().

This is as proposed by Edward d'Auvergne in a post at:
https://mail.gna.org/public/relax-devel/2008-07/msg00021.html (Message ID:
7f080ed10807061152i2a101224p5c5d710d6a92ee@...)

Swapped the generic_fns.relax_re.search() arg order, and fixed all calls to it.

Added a unit test for the generic_fns.relax_re.search() function.

Removed some code checking for deselected molecules and residues.

Only spins can be selected and deselected (one molecule at a time maybe, but still just the spins)!

Some fixes for the test_angles() system test.

'attached_proton' is now called 'attached_atom'.

Another fix for the __find_bonded_atom() Scientific PDB object method.