relax SVN archive

Initialized merge tracking via "svnmerge" with revisions "1-6651" from
svn+ssh://bugman@.../svn/relax/branches/rdc_analysis

Added the struct_index keyword arg to the structural object API write_pdb() method.

Merged revisions 6655-6733 via svnmerge from
svn+ssh://bugman@.../svn/relax/1.3

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r6665 | semor | 2008-07-04 15:41:05 +0200 (Fri, 04 Jul 2008) | 6 lines

Corrected an error in the definition of eta.

This change had been made on the 1.2 line, but was also needed on the 1.3 line.
See r6611 (http://svn.gna.org/viewcvs/relax?rev=6611&view=rev) for details.
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r6673 | semor | 2008-07-04 16:37:40 +0200 (Fri, 04 Jul 2008) | 5 lines

Some changes towards the new design.

The script doesn't work yet and will be introduced into the test suite for further debugging.
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r6675 | semor | 2008-07-04 16:41:12 +0200 (Fri, 04 Jul 2008) | 7 lines

Changed the test suite reference value for eta so the test passes after the equation modification.

This change follows the one for r6665 (http://svn.gna.org/viewcvs/relax?rev=6665&view=rev) and had
already been made on the 1.2 line, but was also needed on the 1.3 line. See r6611
(http://svn.gna.org/viewcvs/relax?rev=6611&view=rev) for details.
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r6676 | semor | 2008-07-04 17:17:00 +0200 (Fri, 04 Jul 2008) | 3 lines

Added the use of a script for consistency_tests system testing.
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r6677 | semor | 2008-07-04 17:18:39 +0200 (Fri, 04 Jul 2008) | 6 lines

Added a script for consistency_tests system testing.

This one is, basically, a copy of the sample script. Changes are thus needed for it to work as a
system test script.
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r6679 | semor | 2008-07-04 18:38:34 +0200 (Fri, 04 Jul 2008) | 3 lines

Added a copyright to the consistency_tests script.
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r6681 | semor | 2008-07-04 18:45:50 +0200 (Fri, 04 Jul 2008) | 3 lines

Improved the consistency_tests system testing script.
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r6685 | semor | 2008-07-04 19:11:30 +0200 (Fri, 04 Jul 2008) | 3 lines

Converted the output file to 'devnull'.
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r6686 | semor | 2008-07-04 19:21:03 +0200 (Fri, 04 Jul 2008) | 3 lines

Converted the force flags to bools.
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r6687 | semor | 2008-07-04 19:22:02 +0200 (Fri, 04 Jul 2008) | 3 lines

Correcte the copyright.
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r6688 | semor | 2008-07-04 19:27:43 +0200 (Fri, 04 Jul 2008) | 3 lines

Converted more force flags to bools.
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r6689 | semor | 2008-07-04 19:29:20 +0200 (Fri, 04 Jul 2008) | 3 lines

Still more conversions of the force flags to bools.
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r6690 | semor | 2008-07-04 19:32:51 +0200 (Fri, 04 Jul 2008) | 3 lines

Conversion of force flags to bools.
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r6691 | semor | 2008-07-04 19:36:15 +0200 (Fri, 04 Jul 2008) | 3 lines

Corrected a typo.
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r6692 | semor | 2008-07-04 20:00:09 +0200 (Fri, 04 Jul 2008) | 3 lines

Conversion of force flags to bools.
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r6693 | semor | 2008-07-04 20:01:41 +0200 (Fri, 04 Jul 2008) | 3 lines

Conversion of force flags to bools.
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Changed the model arg to struct_index in the structural object API method atom_connect().

Changed the model arg to struct_index in the structural object API method atom_add().

Deleted all the PDB terminate() function calls and methods.

These are not necessary as the TER record is now automatically generated.

Removed TER from the add_atom() docstring.

The TER record is now automatically created after any ATOM or HETATM stretch.

Fix for the number of hetrogens in the MASTER record.

Improvements to the print outs during PDB creation.