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SVN archive Commit Log


Commit Date  
[r5431] by bugman

Completion of generic_fns.structure.main.load_spins() and allowed atom selections in atom_loop().

The generic_fns.structure.main.load_spins() function now uses the structural data object API method
atom_loop() to generate the molecule, residue, and spin sequence in the relax data store. The
sequence generation code is mainly from the old load_PDB_sequence() function.

The Scientific Python data object atom_loop() generator method has been updated to allow for only
selected atoms to be yielded.

2008-04-08 13:10:12 Tree
[r5430] by bugman

Merged generic_fns.sequence.load_PDB_sequence() into generic_fns.structure.main.load_spins().

2008-04-08 12:39:03 Tree
[r5429] by bugman

Removed the call to load_PDB_sequence().

The main part of load_PDB_sequence() will shifted to this load_spins() function. Those parts
specific to the Scientific Python PDB representation will be shifted to the atom_loop() method of
the new scientific python data object.

2008-04-08 12:36:46 Tree
[r5428] by bugman

Replaced the call to sequence_exists() by generic_fns.selection.exists_mol_res_spin_data().

2008-04-08 12:34:13 Tree
[r5427] by bugman

Deletion of the sequence_exists() dummy function.

2008-04-08 12:32:38 Tree
[r5426] by bugman

Deleted the load_seq arg unit test of the structure.read_pdb() user function.

The argument no longer exists.

2008-04-08 12:29:25 Tree
[r5425] by bugman

Bug fix for the structure.read_pdb() user function.

Bad set up of the intro string.

2008-04-08 12:28:23 Tree
[r5424] by bugman

Bug fix for the spin_id arg test of the structure.read_pdb() user function.

This now belongs to the structure.load_spins() user function.

2008-04-08 12:26:31 Tree
[r5423] by bugman

Spun out the code for loading spins from read_pdb() to load_spins().

2008-04-08 12:24:13 Tree
[r5422] by bugman

Updated the structure.read_pdb() user function.

The arguments load_seq and spin_id have been removed as this functionality has been shifted into the
new user function structure.load_spins().

2008-04-08 12:19:27 Tree
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