relax SVN archive

Fix for the cone_pdb() function.

The new code should be generating the average pivot-CoM vectors, not the cone outer edge object!

Merged revisions 5047 via svnmerge from
svn+ssh://bugman@.../svn/relax/1.3

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r5047 | bugman | 2008-02-20 14:39:00 +0100 (Wed, 20 Feb 2008) | 5 lines

Bug fix for the generate_vector_residues() function.

The variable 'pdb_vect' no longer exists.
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Added code to the cone_pdb() function to generate the outer part of the cone PDB object.

Bug fix for the generate_vector_residues() function.

The variable 'pdb_vect' no longer exists.

Merged revisions 5040-5045 via svnmerge from
svn+ssh://bugman@.../svn/relax/1.3

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r5040 | bugman | 2008-02-20 11:03:41 +0100 (Wed, 20 Feb 2008) | 7 lines

Created the new function generic_fns.structure.generate_vector_residues().

This new function should allow greater flexibility for creating PDB representations of any type of
vector (and its MC sims). It will also replace the generate_spheroid_axes() and
generate_ellipsoid_axes() functions.
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r5041 | bugman | 2008-02-20 11:56:31 +0100 (Wed, 20 Feb 2008) | 3 lines

All calls to generic_fns.structure.atom_add() now have the atomic_data object passed into it.
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r5042 | bugman | 2008-02-20 11:57:33 +0100 (Wed, 20 Feb 2008) | 3 lines

All calls to generic_fns.structure.atom_connect() now have the atomic_data object passed into it.
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r5043 | bugman | 2008-02-20 12:11:34 +0100 (Wed, 20 Feb 2008) | 3 lines

Converted the generic_fns.structure.create_diff_tensor_pdb() to the new relax design.
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r5044 | bugman | 2008-02-20 14:19:39 +0100 (Wed, 20 Feb 2008) | 5 lines

Removed the calls to generate_spheroid_axes() and generate_ellipsoid_axes() fns.

These have been replaced with calls to generate_vector_residues().
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r5045 | bugman | 2008-02-20 14:20:43 +0100 (Wed, 20 Feb 2008) | 3 lines

Deleted the generate_spheroid_axes() and generate_ellipsoid_axes() fns.
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Deleted the generate_spheroid_axes() and generate_ellipsoid_axes() fns.

Removed the calls to generate_spheroid_axes() and generate_ellipsoid_axes() fns.

These have been replaced with calls to generate_vector_residues().

Converted the generic_fns.structure.create_diff_tensor_pdb() to the new relax design.

All calls to generic_fns.structure.atom_connect() now have the atomic_data object passed into it.

All calls to generic_fns.structure.atom_add() now have the atomic_data object passed into it.