relax SVN archive

Merged revisions 5040-5045 via svnmerge from
svn+ssh://bugman@.../svn/relax/1.3

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r5040 | bugman | 2008-02-20 11:03:41 +0100 (Wed, 20 Feb 2008) | 7 lines

Created the new function generic_fns.structure.generate_vector_residues().

This new function should allow greater flexibility for creating PDB representations of any type of
vector (and its MC sims). It will also replace the generate_spheroid_axes() and
generate_ellipsoid_axes() functions.
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r5041 | bugman | 2008-02-20 11:56:31 +0100 (Wed, 20 Feb 2008) | 3 lines

All calls to generic_fns.structure.atom_add() now have the atomic_data object passed into it.
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r5042 | bugman | 2008-02-20 11:57:33 +0100 (Wed, 20 Feb 2008) | 3 lines

All calls to generic_fns.structure.atom_connect() now have the atomic_data object passed into it.
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r5043 | bugman | 2008-02-20 12:11:34 +0100 (Wed, 20 Feb 2008) | 3 lines

Converted the generic_fns.structure.create_diff_tensor_pdb() to the new relax design.
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r5044 | bugman | 2008-02-20 14:19:39 +0100 (Wed, 20 Feb 2008) | 5 lines

Removed the calls to generate_spheroid_axes() and generate_ellipsoid_axes() fns.

These have been replaced with calls to generate_vector_residues().
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r5045 | bugman | 2008-02-20 14:20:43 +0100 (Wed, 20 Feb 2008) | 3 lines

Deleted the generate_spheroid_axes() and generate_ellipsoid_axes() fns.
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Deleted the generate_spheroid_axes() and generate_ellipsoid_axes() fns.

Removed the calls to generate_spheroid_axes() and generate_ellipsoid_axes() fns.

These have been replaced with calls to generate_vector_residues().

Converted the generic_fns.structure.create_diff_tensor_pdb() to the new relax design.

All calls to generic_fns.structure.atom_connect() now have the atomic_data object passed into it.

All calls to generic_fns.structure.atom_add() now have the atomic_data object passed into it.

Created the new function generic_fns.structure.generate_vector_residues().

This new function should allow greater flexibility for creating PDB representations of any type of
vector (and its MC sims). It will also replace the generate_spheroid_axes() and
generate_ellipsoid_axes() functions.

Merged revisions 5033-5037 via svnmerge from
svn+ssh://bugman@.../svn/relax/1.3

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r5033 | bugman | 2008-02-20 09:23:23 +0100 (Wed, 20 Feb 2008) | 5 lines

Fixes for the generic_fns.structure.atom_add() function.

The atomic_data dictionary is now expected to be passed into the function.
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r5034 | bugman | 2008-02-20 09:24:01 +0100 (Wed, 20 Feb 2008) | 5 lines

Fixes for the generic_fns.structure.atom_connect() function.

The atomic_data dictionary is now expected to be passed into the function.
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r5035 | bugman | 2008-02-20 09:31:00 +0100 (Wed, 20 Feb 2008) | 3 lines

Shifted all the relative atomic mass values into the physical_constants module.
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r5036 | bugman | 2008-02-20 09:32:44 +0100 (Wed, 20 Feb 2008) | 3 lines

Updated the docstring of the generic_fns.structure.atomic_mass() function to epydoc format.
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r5037 | bugman | 2008-02-20 09:36:10 +0100 (Wed, 20 Feb 2008) | 6 lines

Updated the generic_fns.structure.autoscale_tensor() function.

The docstring was changed to epydoc format, the default method changed from None to 'mass', and a
few comments were added.
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Started writing the N-state model cone_pdb() method.

Updated the generic_fns.structure.autoscale_tensor() function.

The docstring was changed to epydoc format, the default method changed from None to 'mass', and a
few comments were added.