relax SVN archive

Reverted r4850 as generic_fns.value.partition_params() has returned to its previous behaviour.

The command used was:
svn merge -r4850:4849 .

Changed the way the model parameters are set in the set() function.

Big refactorisation of the partition_params() and set() functions.

Bug fix for the assemble_param_vector() method.

The value of None is replaced by 0.0 to avoid NaNs.

Merged revisions 4839-4850 via svnmerge from
svn+ssh://bugman@.../svn/relax/1.3

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r4839 | bugman | 2008-01-17 18:20:36 +0100 (Thu, 17 Jan 2008) | 6 lines

Modified the partition_params() function to better handle when no parameter name is supplied.

This situation is used for setting the parameter values of the model. The function now returns the
model_values list to be used later on.
........
r4841 | semor | 2008-01-17 21:50:18 +0100 (Thu, 17 Jan 2008) | 5 lines

Converted another maths_fns module from Numeric to numpy.

The Numeric.matrixmultiply module is deprecated and was thus replaced by the numpy.dot module.
........
r4842 | semor | 2008-01-17 21:53:51 +0100 (Thu, 17 Jan 2008) | 3 lines

Finished the conversion of maths_fns modules from Numeric to numpy.
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r4843 | semor | 2008-01-17 21:58:50 +0100 (Thu, 17 Jan 2008) | 3 lines

Converted dx modules from Numeric to numpy.
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r4844 | semor | 2008-01-17 22:04:34 +0100 (Thu, 17 Jan 2008) | 3 lines

Converted some sample scripts from Numeric to numpy.
........
r4845 | semor | 2008-01-17 22:09:17 +0100 (Thu, 17 Jan 2008) | 3 lines

Converted test_suite modules from Numeric to numpy.
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r4846 | semor | 2008-01-17 22:13:26 +0100 (Thu, 17 Jan 2008) | 5 lines

Converted a specific_fns module from Numeric to numpy.

The Numeric.matrixmultiply module is deprecated and was thus replaced by the numpy.dot module.
........
r4847 | semor | 2008-01-17 22:15:32 +0100 (Thu, 17 Jan 2008) | 5 lines

Fully converted a specific_fns module from Numeric to numpy.

The Numeric.matrixmultiply to numpy.dot change had only been made in the import and not the code.
........
r4848 | semor | 2008-01-17 23:00:51 +0100 (Thu, 17 Jan 2008) | 8 lines

Converted generic_fns modules from Numeric to numpy.

As point in a post by Edward d'Auvergne (minfx-devel mailing list, see below), the select_sim array
(which calls 'ones()') was specified as a integer array.
https://mail.gna.org/public/minfx-commits/2008-01/msg00004.html (Message-id:
<E1JF9Gs-000081-9c@...>)
........
r4849 | bugman | 2008-01-17 23:32:10 +0100 (Thu, 17 Jan 2008) | 5 lines

Initialise the model_values array in the partition_params() function.

This fixes a bug due to model_values not being defined.
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r4850 | bugman | 2008-01-17 23:33:55 +0100 (Thu, 17 Jan 2008) | 3 lines

Fixes for the unit tests of the partition_params() function.
........

Merged revisions 4841-4850 via svnmerge from
svn+ssh://semor@.../svn/relax/1.3

........
r4841 | semor | 2008-01-17 15:50:18 -0500 (Thu, 17 Jan 2008) | 5 lines

Converted another maths_fns module from Numeric to numpy.

The Numeric.matrixmultiply module is deprecated and was thus replaced by the numpy.dot module.
........
r4842 | semor | 2008-01-17 15:53:51 -0500 (Thu, 17 Jan 2008) | 3 lines

Finished the conversion of maths_fns modules from Numeric to numpy.
........
r4843 | semor | 2008-01-17 15:58:50 -0500 (Thu, 17 Jan 2008) | 3 lines

Converted dx modules from Numeric to numpy.
........
r4844 | semor | 2008-01-17 16:04:34 -0500 (Thu, 17 Jan 2008) | 3 lines

Converted some sample scripts from Numeric to numpy.
........
r4845 | semor | 2008-01-17 16:09:17 -0500 (Thu, 17 Jan 2008) | 3 lines

Converted test_suite modules from Numeric to numpy.
........
r4846 | semor | 2008-01-17 16:13:26 -0500 (Thu, 17 Jan 2008) | 5 lines

Converted a specific_fns module from Numeric to numpy.

The Numeric.matrixmultiply module is deprecated and was thus replaced by the numpy.dot module.
........
r4847 | semor | 2008-01-17 16:15:32 -0500 (Thu, 17 Jan 2008) | 5 lines

Fully converted a specific_fns module from Numeric to numpy.

The Numeric.matrixmultiply to numpy.dot change had only been made in the import and not the code.
........
r4848 | semor | 2008-01-17 17:00:51 -0500 (Thu, 17 Jan 2008) | 8 lines

Converted generic_fns modules from Numeric to numpy.

As point in a post by Edward d'Auvergne (minfx-devel mailing list, see below), the select_sim array
(which calls 'ones()') was specified as a integer array.
https://mail.gna.org/public/minfx-commits/2008-01/msg00004.html (Message-id:
<E1JF9Gs-000081-9c@...>)
........
r4849 | bugman | 2008-01-17 17:32:10 -0500 (Thu, 17 Jan 2008) | 5 lines

Initialise the model_values array in the partition_params() function.

This fixes a bug due to model_values not being defined.
........
r4850 | bugman | 2008-01-17 17:33:55 -0500 (Thu, 17 Jan 2008) | 3 lines

Fixes for the unit tests of the partition_params() function.
........

Fixes for the unit tests of the partition_params() function.

Initialise the model_values array in the partition_params() function.

This fixes a bug due to model_values not being defined.

Converted generic_fns modules from Numeric to numpy.

As point in a post by Edward d'Auvergne (minfx-devel mailing list, see below), the select_sim array
(which calls 'ones()') was specified as a integer array.
https://mail.gna.org/public/minfx-commits/2008-01/msg00004.html (Message-id:
<E1JF9Gs-000081-9c@...>)

Fully converted a specific_fns module from Numeric to numpy.

The Numeric.matrixmultiply to numpy.dot change had only been made in the import and not the code.