relax SVN archive

Merged revisions 4778-4780,4785,4787,4792 via svnmerge from
svn+ssh://semor@.../svn/relax/1.3

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r4778 | bugman | 2008-01-16 05:30:55 -0500 (Wed, 16 Jan 2008) | 3 lines

Converted the maths_fns.chi2 module from Numeric to numpy.
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r4779 | bugman | 2008-01-16 06:00:28 -0500 (Wed, 16 Jan 2008) | 5 lines

Updated the docstrings of the chi-squared value, gradient, and Hessian functions.

They are now in epydoc format.
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r4780 | bugman | 2008-01-16 06:04:34 -0500 (Wed, 16 Jan 2008) | 3 lines

Added a module docstring to the chi2 module.
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r4785 | semor | 2008-01-16 10:08:42 -0500 (Wed, 16 Jan 2008) | 5 lines

Corrected a function spacing so it has 2 preceding empty lines.

This was pointed by the 'code_validator' script.
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r4787 | bugman | 2008-01-16 10:37:07 -0500 (Wed, 16 Jan 2008) | 3 lines

Shifted all the dummy return_conversion_factor() methods which return 1 into the base class.
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r4792 | bugman | 2008-01-16 11:01:15 -0500 (Wed, 16 Jan 2008) | 3 lines

Temporarily shifted the model-free code from using the 'minimise' directory to using minfx.
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Wrote the end of the N-state model specific minimise() method.

This includes the use of the isInf() and isNaN() functions, the call to the function for
disassembling the parameter vector, and the storing of the minimisation stats.

Converted the maths_fns.consistency_tests module from Numeric to numpy.

Temporarily shifted the model-free code from using the 'minimise' directory to using minfx.

Removed the dummy return_conversion_factor() method as it is now located in the base class.

Bug fixes for the alignment tensor setting unit tests.

The diagonalised tensor returned by calc_objects() was not the true diagonalised tensor but just the
Sxx, Syy, and Szz along the diagonal of a matrix. The non-diagonalised tensor is now returned.

Introduced the exists_mol_res_spin_data() function into the consitency tests code.

This change is part of the shifting to the new design.

I was explained in a post by Edward d'Auvergne at:
https://mail.gna.org/public/relax-devel/2008-01/msg00041.html (Message-id:
<7f080ed10801111043g7954a49fic72f433110d4cfbc@...>)

Merged revisions 4785-4787 via svnmerge from
svn+ssh://bugman@.../svn/relax/1.3

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r4785 | semor | 2008-01-16 16:08:42 +0100 (Wed, 16 Jan 2008) | 5 lines

Corrected a function spacing so it has 2 preceding empty lines.

This was pointed by the 'code_validator' script.
........
r4787 | bugman | 2008-01-16 16:37:07 +0100 (Wed, 16 Jan 2008) | 3 lines

Shifted all the dummy return_conversion_factor() methods which return 1 into the base class.
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Shifted all the dummy return_conversion_factor() methods which return 1 into the base class.

Shifted from using the code in the 'minimise' directory to using minfx.