relax SVN archive

Bug fix for the copy() function, the structure is appended if the index is None.

Modified the generic_fns.align_tensor.copy() function to use the new data structure.

Updated the get_tensor_index() and get_tensor_object() functions to allow for a different data pipe.

Fix for the unit test of the copying of an alignment tensor (pulling the data from another pipe).

Fix for the unit test of the copying of an alignment tensor (pushing the data from another pipe).

Removed all references to SpecificData and replaced it with AlignTensorList.

Updated the generic_fns.align_tensor.delete() function for the new data structure.

Created the new function get_tensor_object() for obtaining the desired AlignTensorData instance.

Updated the generic_fns.align_tensor.display() function for the new data structure.

Merged revisions 4585-4586 via svnmerge from
svn+ssh://semor@.../svn/relax/1.3

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r4585 | bugman | 2008-01-10 08:35:02 -0500 (Thu, 10 Jan 2008) | 22 lines

Manually ported r4584 from the 1.2 line - the fix to bug #8997 (https://gna.org/bugs/?8997).

The command used was:
svn merge -r4583:4584 svn+ssh://bugman@.../svn/relax/1.2

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r4584 | bugman | 2008-01-10 14:30:10 +0100 (Thu, 10 Jan 2008) | 11 lines
Changed paths:
M /1.2/generic_fns/palmer.py

Fix for bug #8997 (https://gna.org/bugs/index.php?8997).

This bug was reported by Carl Diehl (carl dot diehl at bpc dot lu dot se).

The problem was because of a change between relax versions 1.0 and 1.2. Previously the residue
number was being searched for, but the changes used the absolute position to significantly speed up
the code. But the absolute positions are different in a Modelfree 'mfout' file if simulations are
run. The absolute position in this situation is now properly calculated and the test data attached
to the bug report by Seb now works.
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r4586 | bugman | 2008-01-10 09:54:12 -0500 (Thu, 10 Jan 2008) | 3 lines

Removed a few empty __init__() class methods and shifted their docstrings to the class docstring.
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