relax SVN archive

Wrote a function to calculate a z-y-z rotation matrix given the Euler angles.

This is required as part of the target function for the N-state model.

Renamed the class containing the target function from N_state_model to N_state_opt.

The name N_state_model was clashing with the class N_state_model of the specific_fns.n_state_model
module.

Added the missing import of minimise.generic.generic_minimise().

Switched from the call to match() to search().

Fixed up the minimise() method to use the target function framework properly.

Added the basic framework for the N-state model target function.

Added the basic code for implementing optimisation of the N-state model.

The target function, the maths_fns code, doesn't yet exist though.

Merged revisions 4476,4481-4493 via svnmerge from
svn+ssh://semor@.../svn/relax/1.3

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r4476 | bugman | 2008-01-08 03:50:10 -0500 (Tue, 08 Jan 2008) | 3 lines

Ordered the committers list alphabetically.
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r4481 | bugman | 2008-01-08 08:29:05 -0500 (Tue, 08 Jan 2008) | 3 lines

Shifted the contents of the test_opendx_s2_te_rex() system test into its own script.
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r4482 | bugman | 2008-01-08 08:31:18 -0500 (Tue, 08 Jan 2008) | 5 lines

Bug fix: Removed the 'quit' keyword arg from the call of the prompt() function.

The relax prompt is back again!
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r4483 | bugman | 2008-01-08 08:47:15 -0500 (Tue, 08 Jan 2008) | 3 lines

Converted all of the opt_setup_S2_0_970_te_2048_Rex_0_149() set up function into its own script.
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r4484 | bugman | 2008-01-08 08:51:52 -0500 (Tue, 08 Jan 2008) | 3 lines

All the model-free optimisation tests now run the opt_setup_S2_0_970_te_2048_Rex_0_149.py script.
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r4485 | bugman | 2008-01-08 09:18:10 -0500 (Tue, 08 Jan 2008) | 5 lines

Tidied up the interact_script() function (with comments). The function also returns its status.

The status is obviously only returned if relax doesn't not quit.
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r4486 | bugman | 2008-01-08 09:26:28 -0500 (Tue, 08 Jan 2008) | 5 lines

The status of script execution is now returned by the run() interpreter method.

Nothing currently uses this.
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r4487 | bugman | 2008-01-08 09:36:16 -0500 (Tue, 08 Jan 2008) | 8 lines

prompt.interpreter.interact_script() has been modified to allow RelaxErrors to be raised.

Previously running a script would catch the error, send a nice message to STDERR, and quit. Now
the function can raise the error if asked. This is required for the system tests (because of the
unittest framework). Alternatively the status of the script could have been used by the test, but
this is easier for the test writer and makes the code more flexible.
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r4488 | bugman | 2008-01-08 09:42:44 -0500 (Tue, 08 Jan 2008) | 3 lines

Converted the interact_prompt() args to keyword args and epydoc'd the docstring.
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r4489 | bugman | 2008-01-08 10:19:57 -0500 (Tue, 08 Jan 2008) | 3 lines

Updated the interact_script() docstring for the epydoc format.
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r4490 | bugman | 2008-01-08 10:21:23 -0500 (Tue, 08 Jan 2008) | 3 lines

Updated the prompt() docstring for the epydoc format.
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r4491 | bugman | 2008-01-08 10:22:33 -0500 (Tue, 08 Jan 2008) | 3 lines

Updated the run_script() docstring for the epydoc format.
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r4492 | bugman | 2008-01-08 10:22:58 -0500 (Tue, 08 Jan 2008) | 3 lines

Converted the default quit arg of run_script() to a bool.
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r4493 | bugman | 2008-01-08 10:24:17 -0500 (Tue, 08 Jan 2008) | 3 lines

Updated the runcode() docstring for the epydoc format.
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Added the __docformat__ variable to the return_data_name() method.

Merged revisions 4461-4493 via svnmerge from
svn+ssh://bugman@.../svn/relax/1.3

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r4461 | semor | 2008-01-07 18:58:13 +0100 (Mon, 07 Jan 2008) | 3 lines

Fixed a typo in an import statement.
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r4473 | semor | 2008-01-08 00:42:26 +0100 (Tue, 08 Jan 2008) | 3 lines

Updated the COMMITTERS file.
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r4476 | bugman | 2008-01-08 09:50:10 +0100 (Tue, 08 Jan 2008) | 3 lines

Ordered the committers list alphabetically.
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r4481 | bugman | 2008-01-08 14:29:05 +0100 (Tue, 08 Jan 2008) | 3 lines

Shifted the contents of the test_opendx_s2_te_rex() system test into its own script.
........
r4482 | bugman | 2008-01-08 14:31:18 +0100 (Tue, 08 Jan 2008) | 5 lines

Bug fix: Removed the 'quit' keyword arg from the call of the prompt() function.

The relax prompt is back again!
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r4483 | bugman | 2008-01-08 14:47:15 +0100 (Tue, 08 Jan 2008) | 3 lines

Converted all of the opt_setup_S2_0_970_te_2048_Rex_0_149() set up function into its own script.
........
r4484 | bugman | 2008-01-08 14:51:52 +0100 (Tue, 08 Jan 2008) | 3 lines

All the model-free optimisation tests now run the opt_setup_S2_0_970_te_2048_Rex_0_149.py script.
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r4485 | bugman | 2008-01-08 15:18:10 +0100 (Tue, 08 Jan 2008) | 5 lines

Tidied up the interact_script() function (with comments). The function also returns its status.

The status is obviously only returned if relax doesn't not quit.
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r4486 | bugman | 2008-01-08 15:26:28 +0100 (Tue, 08 Jan 2008) | 5 lines

The status of script execution is now returned by the run() interpreter method.

Nothing currently uses this.
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r4487 | bugman | 2008-01-08 15:36:16 +0100 (Tue, 08 Jan 2008) | 8 lines

prompt.interpreter.interact_script() has been modified to allow RelaxErrors to be raised.

Previously running a script would catch the error, send a nice message to STDERR, and quit. Now
the function can raise the error if asked. This is required for the system tests (because of the
unittest framework). Alternatively the status of the script could have been used by the test, but
this is easier for the test writer and makes the code more flexible.
........
r4488 | bugman | 2008-01-08 15:42:44 +0100 (Tue, 08 Jan 2008) | 3 lines

Converted the interact_prompt() args to keyword args and epydoc'd the docstring.
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r4489 | bugman | 2008-01-08 16:19:57 +0100 (Tue, 08 Jan 2008) | 3 lines

Updated the interact_script() docstring for the epydoc format.
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r4490 | bugman | 2008-01-08 16:21:23 +0100 (Tue, 08 Jan 2008) | 3 lines

Updated the prompt() docstring for the epydoc format.
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r4491 | bugman | 2008-01-08 16:22:33 +0100 (Tue, 08 Jan 2008) | 3 lines

Updated the run_script() docstring for the epydoc format.
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r4492 | bugman | 2008-01-08 16:22:58 +0100 (Tue, 08 Jan 2008) | 3 lines

Converted the default quit arg of run_script() to a bool.
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r4493 | bugman | 2008-01-08 16:24:17 +0100 (Tue, 08 Jan 2008) | 3 lines

Updated the runcode() docstring for the epydoc format.
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